View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7761_high_2 (Length: 553)
Name: NF7761_high_2
Description: NF7761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7761_high_2 |
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| [»] scaffold0376 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 444; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 1 - 545
Target Start/End: Original strand, 29729387 - 29729932
Alignment:
| Q |
1 |
ttgctccaagtcttgggtccgcgaccctcccccttcaagagtgctgaactatgaccaatttaagctaggggttcaagatgaggagacagatgtcgaaaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29729387 |
ttgctccaagtcttgggtccgcgaccctcccccttcaagagtgctgaactatgaccaatttaagctaggggttcaagatgaggagacagatgtcgaaaaa |
29729486 |
T |
|
| Q |
101 |
attgttcatggaacccaaggttgttcccacatagttgaataagtttatttcttttactatgaaactattttgaagttgttatcaagttcaaatgaaaaag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
29729487 |
attgttcatggaacccaaggttgttcccacatagttgaataagtttatttcttttactatgaaactattttgaagtt---atcaagttcaaatgaaaaag |
29729583 |
T |
|
| Q |
201 |
ggatttgagggtatgatcttagtcgatacannnnnnnnnn----agtttaattactgattcattaataattctatctacaaatatgaatgctatatttgg |
296 |
Q |
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||||||||||||||||||||||||||| || |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
29729584 |
ggatttgagggtatgatcttagtcgatgcatttttattttttttagtttaattactgattcagtaataattctatctacaaatatgaatgctatatttgg |
29729683 |
T |
|
| Q |
297 |
acttatttatattatattccatttttatactggtcctgttaatgttggtaaccaagaaatactggtcctatatttggacagttttattcgatgttgttga |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |
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| T |
29729684 |
acttatttatattatattccatttttatactggtcctgttaatgttggtaaccaagaagtactgatcctatatttggacagttttattcgatgttgttga |
29729783 |
T |
|
| Q |
397 |
taattaattgggtaagaaggtttcattgcaatgccacataggccttcctttgcatctatgtctcgcttaatccttatatagcccttctctccccatcttt |
496 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
29729784 |
taattaattgggtaagaaggtttcattgcaatgccacataggccttcctttgcatctatgtctcgcttaatccttatataacccttctctccccatcttt |
29729883 |
T |
|
| Q |
497 |
tgctccaggagttttcgactaaccaatagtgaataccatcttttgatgt |
545 |
Q |
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| T |
29729884 |
tactccatgagtttttcactaaccaatatttaataccatcttttgatgt |
29729932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 373 - 545
Target Start/End: Original strand, 29733100 - 29733268
Alignment:
| Q |
373 |
gacagttttattcgatgttgttgataattaattgggtaagaaggtttcattgcaatgccacataggccttcctttgcatctatgtctcgcttaatcctta |
472 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
29733100 |
gacagttttattcgatgttgttgataat----tgggtaagaaggtttcattgcaatgccacataggccttcctttgcatctatatctcgcttaatcctta |
29733195 |
T |
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| Q |
473 |
tatagcccttctctccccatcttttgctccaggagttttcgactaaccaatagtgaataccatcttttgatgt |
545 |
Q |
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|||| |||||||||||||||||||| ||||| ||||||| ||||||||||| | ||||||||||||||||| |
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| T |
29733196 |
tataacccttctctccccatcttttactccatgagtttttcactaaccaatatttgataccatcttttgatgt |
29733268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 403 - 492
Target Start/End: Original strand, 29934765 - 29934854
Alignment:
| Q |
403 |
attgggtaagaaggtttcattgcaatgccacataggccttcctttgcatctatgtctcgcttaatccttatatagcccttctctccccat |
492 |
Q |
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||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||| |
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| T |
29934765 |
attgggtaaaaagcattcattgcaatgccacataggccttcctttgcatctatgtctcgcttcatccttatatatcctttctctccccat |
29934854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 404 - 494
Target Start/End: Original strand, 30056191 - 30056281
Alignment:
| Q |
404 |
ttgggtaagaaggtttcattgcaatgccacataggccttcctttgcatctatgtctcgcttaatccttatatagcccttctctccccatct |
494 |
Q |
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|||||||||||| | ||| | |||||| |||| ||||| |||||||||||||||||||| || |||||||| | ||||||||||||||| |
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| T |
30056191 |
ttgggtaagaagcatccatcggaatgccgcataaaccttcttttgcatctatgtctcgcttcattcttatatatctcttctctccccatct |
30056281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 403 - 494
Target Start/End: Original strand, 30072710 - 30072801
Alignment:
| Q |
403 |
attgggtaagaaggtttcattgcaatgccacataggccttcctttgcatctatgtctcgcttaatccttatatagcccttctctccccatct |
494 |
Q |
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|||||| |||||| | ||| |||||||| |||| ||||||||||||||||||||| |||| ||||||||||| | ||||| |||||||| |
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| T |
30072710 |
attgggcaagaagcctccatcgcaatgccgcataagccttcctttgcatctatgtcgtgcttcatccttatatatcatttctcaccccatct |
30072801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 84; Significance: 1e-39; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 185 - 353
Target Start/End: Original strand, 16850095 - 16850261
Alignment:
| Q |
185 |
agttcaaatgaaaaagggatttgagggtatgatcttagtcgatacannnnnnnnnnagtttaattactgattcattaataattctatctacaaatatgaa |
284 |
Q |
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||||||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||| ||||| |
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| T |
16850095 |
agttcaaatgaaaaagggatt-gagggtatgatcttagttgatacatttttttt--agtttaattactgattcagtaataattctatctacaaacatgaa |
16850191 |
T |
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| Q |
285 |
t-gcta-tatttggacttatttatattatattccatttttatactggtcctgttaatgttggtaaccaaga |
353 |
Q |
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| | || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
16850192 |
tagttactattt-gacttatttatattatattccatttttatactggtcctgttaatgttggtaactaaga |
16850261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 16850015 - 16850096
Alignment:
| Q |
1 |
ttgctccaagtcttgggtccgcgaccctcccccttcaagagtgctgaactatgaccaatttaagctaggggttcaagatgag |
82 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |
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| T |
16850015 |
ttgctccaagtcttgggtccgcgaccctcccccttcaagaatgctgaactatgatcaatttaagctaggggttcaagatgag |
16850096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0376 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0376
Description:
Target: scaffold0376; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 118 - 174
Target Start/End: Original strand, 4139 - 4195
Alignment:
| Q |
118 |
aggttgttcccacatagttgaataagtttatttcttttactatgaaactattttgaa |
174 |
Q |
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||||||||||||||||||||| ||||||||||| | |||||||||||| | |||||| |
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| T |
4139 |
aggttgttcccacatagttgagtaagtttatttttgttactatgaaaccaatttgaa |
4195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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