View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7761_high_9 (Length: 366)
Name: NF7761_high_9
Description: NF7761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7761_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 20 - 355
Target Start/End: Complemental strand, 41007983 - 41007648
Alignment:
| Q |
20 |
cctaaacatagaatttcaaacaactttctttttgacaagcaaacacaactcttatgactaaacaaaaccaccactctccaatttgggttggtgattcaat |
119 |
Q |
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| T |
41007983 |
cctaaacatagaatttcaaacaactttctttttgacaagcaaacacaactcttatgactaaacaaaaccaccactctccaatttgggttggtgattcaat |
41007884 |
T |
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| Q |
120 |
aataatcaaaggtatttaatattaataacaagaaggcatcttaccataaacaatatcaattaggcaagacttattcaccnnnnnnnnttaggcaaggttt |
219 |
Q |
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| T |
41007883 |
aataatcaaaggtattcaatattaataacaagaaggcatcttaccataaacaatatcaattaggcaagacttattcaccaaaaaaaattaggcaaggttt |
41007784 |
T |
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| Q |
220 |
agatctaaaatgttgagaaaaataagaagcatgttatatgtagtaagctgtaacaaaaccaaactatgggagacaaagattagatcaatagatcttacat |
319 |
Q |
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| T |
41007783 |
agatctaaaatgttgagaaaaataagaagcatgttatatgtagtaagctgttacaaaaccaaactatgggagacaaagattagatcaatagatcttacat |
41007684 |
T |
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| Q |
320 |
gtaaattaaaatttgtactgtgtttttgccattcat |
355 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
41007683 |
gtaaattaaaatttgtactgtgtttttgccattcat |
41007648 |
T |
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