View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7761_low_1 (Length: 971)
Name: NF7761_low_1
Description: NF7761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7761_low_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 848; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 848; E-Value: 0
Query Start/End: Original strand, 26 - 936
Target Start/End: Original strand, 52385667 - 52386570
Alignment:
| Q |
26 |
catccaattagttgcagatccagttaccatgcaaaatagtactatgaaggatgatgtaacaaatcttactaataaagtagccacggtgagcacatcaaca |
125 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
52385667 |
catccaattagttgcagatccaattaccatgcaaaatagtactatgaaggatgatgtaacaaatcttactaataaagtagccaaggtgagcacatcaaca |
52385766 |
T |
|
| Q |
126 |
gcaacacagcttccgacagatgacaaaacagtcagtgtggtaactctggcgggcgacaacagaggagcaacaatgcatgtggcaggttcccattcccaat |
225 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52385767 |
gcaacacagcttccgacagatgacaaaacagtcagtgtggtaactctggcgggcgacaacagaggagcaacaatgcatgtggcaggttcccattcccaat |
52385866 |
T |
|
| Q |
226 |
caacaaggaagaaggggtcaatccacaacatacaccgaaccaaagaggaagaagagaaagatgaagcgggaaaggcatatgtgaacagcaacatacagag |
325 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52385867 |
caacaaggaagaaggggtcaatccacaacatacaccgaaccaaagaggaagaagagaaagatgaagcgggaaaggcatatgtgaacagcaacatacagag |
52385966 |
T |
|
| Q |
326 |
tatgaataattcattgatggtgcaaggttcaataaatggaagagaccccggcgttcatgtcattcttcccgaaaagcctgagcctcaagttaaacaaggt |
425 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52385967 |
tatgaataattcattgatggtgcaaggttcaataaatggaagagaccccggcgttcatgtcattcttcccgaaaagcctgagcctcaagttaaacaaggt |
52386066 |
T |
|
| Q |
426 |
ttggaaaaccgcaaagctgaagttaaaacagttagccgggtagagaggttaacttaccaaccaatggttcgaagacgatgcctgagaggacttctggtgg |
525 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
52386067 |
ttggaaaaccgcgaagctgaagttaaaacagttagccgggtagagaggttaacttaccaaccaatggttcgaagacgatgcctgagaggacttctgttgg |
52386166 |
T |
|
| Q |
526 |
aaccaagtgattctgatcctgacaatcctgataaacctcgtcgtcatggctgcaaagtcagctgcggagatgttagaaaggataacgggattctgtaaca |
625 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52386167 |
aaccaagtgattctgatcctgacaatcctgataaacctcgtcgtcatggctgcaaagtcagctgcggagatgttagaaaggataacgggattctgtaaca |
52386266 |
T |
|
| Q |
626 |
aaattataaacatgaaatactgtatattcttataattcacttgagacatcataccaggattttgatttttcatgttgacaacatccatactctgtattgt |
725 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52386267 |
aaattataaacatgaaatactgtatattcttataattcacttgagacatcataccaggattttgatttttcatgttgacaacatccatactctgtattgt |
52386366 |
T |
|
| Q |
726 |
tgattttatttaccatttattcatttacagtaagttaacaacattcatacttttataatcatatatatgacaggaacttcgctaccaatctgaaagatca |
825 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |
|
|
| T |
52386367 |
tgattttatttaccatttattcatttacagtaagttaacaacattcatacttttataatc----atatgaaaggaacttcgctaccaatctgaaagatca |
52386462 |
T |
|
| Q |
826 |
aaagttattggacgcatatgcaatggttgctataagaatttcttatcttctactaccatttaatatacttatatccaaaatcatctttaattaggtccct |
925 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52386463 |
caagttattggacgcatatgcaatggttgctataagaatttcttatctt---ctaacatttaatatacttatatccaaaatcatctttaattaggtccct |
52386559 |
T |
|
| Q |
926 |
tacacattgtc |
936 |
Q |
| |
|
|||| |||||| |
|
|
| T |
52386560 |
tacaaattgtc |
52386570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 300 - 382
Target Start/End: Original strand, 7087813 - 7087895
Alignment:
| Q |
300 |
gcatatgtgaacagcaacatacagagtatgaataattcattgatggtgcaaggttcaataaatggaagagaccccggcgttca |
382 |
Q |
| |
|
|||||||| |||||||||||||| ||||| ||||||||| | ||| | || |||||||| |||| ||||||||| || ||||| |
|
|
| T |
7087813 |
gcatatgttaacagcaacatacaaagtatcaataattcactcatgtttcatggttcaatcaatgaaagagaccctggagttca |
7087895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University