View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7761_low_10 (Length: 459)

Name: NF7761_low_10
Description: NF7761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7761_low_10
NF7761_low_10
[»] chr8 (8 HSPs)
chr8 (109-404)||(31877211-31877503)
chr8 (182-437)||(31561156-31561413)
chr8 (107-249)||(31547742-31547884)
chr8 (105-404)||(31559304-31559594)
chr8 (105-181)||(31544656-31544732)
chr8 (107-222)||(31556471-31556586)
chr8 (317-395)||(31556306-31556384)
chr8 (36-100)||(31877117-31877181)
[»] chr5 (3 HSPs)
chr5 (108-187)||(40640266-40640345)
chr5 (105-182)||(32361824-32361901)
chr5 (105-182)||(32379055-32379132)
[»] chr7 (2 HSPs)
chr7 (105-183)||(30034433-30034511)
chr7 (108-181)||(45868101-45868174)
[»] chr4 (3 HSPs)
chr4 (109-187)||(30161971-30162049)
chr4 (106-182)||(38507765-38507841)
chr4 (105-181)||(55290062-55290138)
[»] chr1 (2 HSPs)
chr1 (108-190)||(38624993-38625075)
chr1 (107-182)||(46613935-46614010)
[»] chr2 (6 HSPs)
chr2 (97-181)||(6493518-6493602)
chr2 (105-181)||(8328450-8328526)
chr2 (109-188)||(18229425-18229504)
chr2 (109-181)||(9596926-9596998)
chr2 (109-181)||(33994623-33994695)
chr2 (109-181)||(21281552-21281623)
[»] chr3 (2 HSPs)
chr3 (109-187)||(50683112-50683190)
chr3 (109-181)||(32053543-32053615)


Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-125; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 109 - 404
Target Start/End: Original strand, 31877211 - 31877503
Alignment:
Q  109 tgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgcttgatgatagttttgtgctgcttatta 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| ||    
T  31877211 tgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgcttgatgatagtttggtgctgtttagta 31877310  T
Q  209 attgctttcgtgaattttagaatacttttacaattttctagattgaaatgatggggaagcatatgaaaaatatggt-agagtttttcatacagaagctct 307  Q
    || ||||| ||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  31877311 atggcttttgtgagacttagaatacttttacaattttctagattgaaatgatggggaagcatatgaaaaatatggtgagagtttttcatacagaagctct 31877410  T
Q  308 taactgttggaataacaacatatatcagtgagtgaattgatcaaattcaccttgagaccgattacatcctccaagccaaggtggatgaatccgcaaa 404  Q
    ||||||||||||||||||||||||||     ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  31877411 taactgttggaataacaacatatatc----cgtgaattgatcaaattcaccttgagactgattacatcctccaagccaaggtggatgaatccacaaa 31877503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 182 - 437
Target Start/End: Complemental strand, 31561413 - 31561156
Alignment:
Q  182 ttgatgatagttttgtgctgcttattaattgctttcgtgaattttagaatacttttacaattttctagattgaaatgatggggaagcatatgaaaaatat 281  Q
    ||||||||||||| |||||| ||| |||| ||||| ||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31561413 ttgatgatagtttggtgctgtttagtaatggcttttgtgagaattagaatacttttacaattttctagattgaaatgatggggaagcatatgaaaaatat 31561314  T
Q  282 ggt-agagtttttcatacagaagctcttaactgttggaataacaacatatatcagtgagtgaattgatcaaattcaccttgagaccgattacatcctcca 380  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31561313 ggtgagagtttttcatacagaagctcttaactgttggaataacaacatatatcagtgagtgaattgatcaaattcaccttgagaccgattacatcctcca 31561214  T
Q  381 agccaaggtggatgaatccgcaaagtctagag-atatgtgattgttcaagttgtacat 437  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  31561213 agccaaggtggatgaatccgcaaagtctagagaatatgtgattgttcaagttgtacat 31561156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 107 - 249
Target Start/End: Complemental strand, 31547884 - 31547742
Alignment:
Q  107 aatgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgcttgatgatagttttgtgctgcttat 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||     
T  31547884 aatgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgcttggtgatagtttcgtgctgcttac 31547785  T
Q  207 taattgctttcgtgaattttagaatacttttacaattttctag 249  Q
    |||||||||| ||||||||||||||||||||||||||||||||    
T  31547784 taattgcttttgtgaattttagaatacttttacaattttctag 31547742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 105 - 404
Target Start/End: Complemental strand, 31559594 - 31559304
Alignment:
Q  105 aaaatgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgcttgatgatagttttgtgctgctt 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||  ||  |||||||||    
T  31559594 aaaatgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgcataacgattattcagtgctgctt 31559495  T
Q  205 attaattgctttcgtgaattttagaatacttttacaattttctagattgaaatgatggggaagcatatgaaaaatatggt-agagtttttcatacagaag 303  Q
      ||||||||||| ||||   ||||||| ||      ||| |||| | |||||||||||| | ||||||| ||||  ||| |||||||  | |  |||||    
T  31559494 cgtaattgctttcctgaaaactagaataatt------tttcctagttggaaatgatgggggaccatatgagaaatcaggtcagagtttcgcttgtagaag 31559401  T
Q  304 ctcttaactgttggaataacaacatatatcagtgagtgaattgatcaaattcaccttgagaccgattacatcctccaagccaaggtggatgaatccgcaa 403  Q
    ||||||||||||||||||||||||||||||    |||||| |||||||||| ||||||||||| ||||||||||| |||||||||||||||||||| |||    
T  31559400 ctcttaactgttggaataacaacatatatc----agtgaactgatcaaattaaccttgagaccaattacatcctctaagccaaggtggatgaatccacaa 31559305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 105 - 181
Target Start/End: Complemental strand, 31544732 - 31544656
Alignment:
Q  105 aaaatgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgc 181  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31544732 aaaatgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgc 31544656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 107 - 222
Target Start/End: Complemental strand, 31556586 - 31556471
Alignment:
Q  107 aatgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgcttgatgatagttttgtgctgcttat 206  Q
    ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||   ||||||||| ||      
T  31556586 aatgcggtgagcgtggatcaaacacgcgaccttcagatcttcaatctgacgctctcccaactgagctatccccgcatgatgattactttgtgctgatttg 31556487  T
Q  207 taattgctttcgtgaa 222  Q
    ||||||| ||||||||    
T  31556486 taattgcattcgtgaa 31556471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 317 - 395
Target Start/End: Complemental strand, 31556384 - 31556306
Alignment:
Q  317 gaataacaacatatatcagtgagtgaattgatcaaattcaccttgagaccgattacatcctccaagccaaggtggatga 395  Q
    |||| ||| ||||||||||| || || ||||||||||| || |||||||| ||||||||||||||||||| ||||||||    
T  31556384 gaattacatcatatatcagtcagcgacttgatcaaattaacattgagaccaattacatcctccaagccaaagtggatga 31556306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 36 - 100
Target Start/End: Original strand, 31877117 - 31877181
Alignment:
Q  36 aaccaaatttattggcaatgcataagcaattattattccatatatacaggttttttaattaaaaa 100  Q
    |||||||||||  | ||||||||| | ||||||||| |||||||||||| |||| ||||||||||    
T  31877117 aaccaaatttaaagtcaatgcatatgtaattattataccatatatacagcttttataattaaaaa 31877181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 80; Significance: 2e-37; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 108 - 187
Target Start/End: Original strand, 40640266 - 40640345
Alignment:
Q  108 atgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgcttgatg 187  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40640266 atgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgcttgatg 40640345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 105 - 182
Target Start/End: Original strand, 32361824 - 32361901
Alignment:
Q  105 aaaatgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgct 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32361824 aaaatgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgct 32361901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 105 - 182
Target Start/End: Original strand, 32379055 - 32379132
Alignment:
Q  105 aaaatgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgct 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32379055 aaaatgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgct 32379132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 9e-37; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 105 - 183
Target Start/End: Original strand, 30034433 - 30034511
Alignment:
Q  105 aaaatgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgctt 183  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30034433 aaaatgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgctt 30034511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 108 - 181
Target Start/End: Original strand, 45868101 - 45868174
Alignment:
Q  108 atgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgc 181  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45868101 atgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgc 45868174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 9e-37; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 109 - 187
Target Start/End: Complemental strand, 30162049 - 30161971
Alignment:
Q  109 tgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgcttgatg 187  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30162049 tgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgcttgatg 30161971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 106 - 182
Target Start/End: Original strand, 38507765 - 38507841
Alignment:
Q  106 aaatgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgct 182  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38507765 aaatgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgct 38507841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 105 - 181
Target Start/End: Original strand, 55290062 - 55290138
Alignment:
Q  105 aaaatgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgc 181  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55290062 aaaatgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgc 55290138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 9e-37; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 108 - 190
Target Start/End: Original strand, 38624993 - 38625075
Alignment:
Q  108 atgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgcttgatgata 190  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  38624993 atgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgcttgttgata 38625075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 107 - 182
Target Start/End: Complemental strand, 46614010 - 46613935
Alignment:
Q  107 aatgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgct 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46614010 aatgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgct 46613935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 77; Significance: 1e-35; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 97 - 181
Target Start/End: Complemental strand, 6493602 - 6493518
Alignment:
Q  97 aaaatagtaaaatgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgc 181  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6493602 aaaattgttaaatgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgc 6493518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 105 - 181
Target Start/End: Original strand, 8328450 - 8328526
Alignment:
Q  105 aaaatgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgc 181  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8328450 aaaatgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgc 8328526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 109 - 188
Target Start/End: Complemental strand, 18229504 - 18229425
Alignment:
Q  109 tgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgcttgatga 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  18229504 tgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgcttaatga 18229425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 109 - 181
Target Start/End: Complemental strand, 9596998 - 9596926
Alignment:
Q  109 tgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgc 181  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9596998 tgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgc 9596926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 109 - 181
Target Start/End: Original strand, 33994623 - 33994695
Alignment:
Q  109 tgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgc 181  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33994623 tgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgc 33994695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 109 - 181
Target Start/End: Original strand, 21281552 - 21281623
Alignment:
Q  109 tgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgc 181  Q
    |||||||||| |||||| |||||||||||||| |||||||| ||||| |||||||||||||||||||||||||    
T  21281552 tgcggtgagcatggatcaaacacgcgaccttcggatcttca-tctgaggctctcccaactgagctatccccgc 21281623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 109 - 187
Target Start/End: Original strand, 50683112 - 50683190
Alignment:
Q  109 tgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgcttgatg 187  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  50683112 tgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatcccagcttgatg 50683190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 109 - 181
Target Start/End: Original strand, 32053543 - 32053615
Alignment:
Q  109 tgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgc 181  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32053543 tgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgc 32053615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University