View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7761_low_11 (Length: 455)

Name: NF7761_low_11
Description: NF7761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7761_low_11
NF7761_low_11
[»] chr8 (6 HSPs)
chr8 (74-440)||(9290176-9290541)
chr8 (74-440)||(8211931-8212280)
chr8 (222-309)||(41374153-41374240)
chr8 (9-77)||(4142026-4142094)
chr8 (9-77)||(4129674-4129742)
chr8 (46-77)||(4119679-4119710)
[»] chr3 (2 HSPs)
chr3 (74-403)||(51424404-51424733)
chr3 (74-402)||(11686373-11686702)
[»] chr4 (2 HSPs)
chr4 (74-387)||(7054633-7054945)
chr4 (110-387)||(14462492-14462769)
[»] chr2 (1 HSPs)
chr2 (74-383)||(38980539-38980847)
[»] scaffold0320 (1 HSPs)
scaffold0320 (123-269)||(13310-13455)
[»] scaffold0442 (2 HSPs)
scaffold0442 (258-440)||(12622-12801)
scaffold0442 (74-222)||(12476-12624)


Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-121; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 74 - 440
Target Start/End: Complemental strand, 9290541 - 9290176
Alignment:
Q  74 taccctggcggttgaaagtcaagtgaggccagctatattacactcatccgtggcgacatgcatgtggaattcctcttccatctttgtcgtctcttgtttt 173  Q
    |||||||||||| ||  |||||||| |||  ||  ||||||| || || |||||| ||||||||||| |||||||||||||||| |||||||||||||||    
T  9290541 taccctggcggtggagtgtcaagtgtggcatgccttattacattcttcggtggcggcatgcatgtggtattcctcttccatcttcgtcgtctcttgtttt 9290442  T
Q  174 ttcagagnnnnnnnnctttgaaaaatataatacaaatagaatgacaacaattcagataaatatcatctaacaaacatatattggacatcccccatccatt 273  Q
    |||||||        |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  9290441 ttcagagttttttttctttgaaaaatataatacaaatagaatgacaacaattcaggtaaatatcatctaacaaacatatattggacatcccccatccatt 9290342  T
Q  274 aaatgttgatgaaggaaatgaaagactaataaagaaaatannnnnnngtaaatatataccagaagatataatcaagacaatgaccctcactttgattcat 373  Q
    |||||||||||||| ||||||||||||| |||||||||||       |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  9290341 aaatgttgatgaagaaaatgaaagactactaaagaaaata-ttttttgtaaatatgtaccagaagatataatcaagacaatgaccctcactttgattcat 9290243  T
Q  374 gtatatacctcaattatattttctctgataannnnnnnncatttccaatttgatatggattttttct 440  Q
    |||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||    
T  9290242 gtatatacctcaattatattttctctgataattttgtttcatttccaatttgatatggattttttct 9290176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 74 - 440
Target Start/End: Complemental strand, 8212280 - 8211931
Alignment:
Q  74 taccctggcggttgaaagtcaagtgaggccagctatattacactcatccgtggcgacatgcatgtggaattcctcttccatctttgtcgtctcttgtttt 173  Q
    |||||||||||| ||  |||||||| |||  ||| ||||||| || || |||||| |||||||||||||||||||||||||||| |||||||||||||||    
T  8212280 taccctggcggtggagtgtcaagtgtggcatgctttattacattcttcggtggcggcatgcatgtggaattcctcttccatcttcgtcgtctcttgtttt 8212181  T
Q  174 ttcagagnnnnnnnnctttgaaaaatataatacaaatagaatgacaacaattcagataaatatcatctaacaaacatatattggacatcccccatccatt 273  Q
    |||| |         || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                  |||||    
T  8212180 ttcataattttttttctctgaaaaatataatacaaatagaatgacaacaattcagataaatatcatctaacaaacat------------------ccatt 8212099  T
Q  274 aaatgttgatgaaggaaatgaaagactaataaagaaaatannnnnnngtaaatatataccagaagatataatcaagacaatgaccctcactttgattcat 373  Q
    ||||||||||||||||||||||||||||||||      |        |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8212098 aaatgttgatgaaggaaatgaaagactaataatttttttttttttttgtaaatatataccagaagatataatcaagacaatgaccctcactttgattcat 8211999  T
Q  374 gtatatacctcaattatattttctctgataa-nnnnnnnncatttccaatttgatatggattttttct 440  Q
    ||||||||||||||| |||||||||||||||         |||||||||||||||||| |||||||||    
T  8211998 gtatatacctcaattttattttctctgataatttttttttcatttccaatttgatatgtattttttct 8211931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 222 - 309
Target Start/End: Complemental strand, 41374240 - 41374153
Alignment:
Q  222 aattcagataaatatcatctaacaaacatatattggacatcccccatccattaaatgttgatgaaggaaatgaaagactaataaagaa 309  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  41374240 aattcagataaatatcatctaacaaacatatattggacatcccccatctattaaatgttgatgaaggaaatgaaagactaataaagaa 41374153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 9 - 77
Target Start/End: Original strand, 4142026 - 4142094
Alignment:
Q  9 agatcgatgactttgttgagaagattctgtacttcgagaattttgcttgtgaacaaatgcaactttacc 77  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4142026 agatcgatgactttgttgagaagattctgtacttcgagaattttgcttgtgaacaaatgcaactttacc 4142094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 9 - 77
Target Start/End: Original strand, 4129674 - 4129742
Alignment:
Q  9 agatcgatgactttgttgagaagattctgtacttcgagaattttgcttgtgaacaaatgcaactttacc 77  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  4129674 agatcgatgactttgttgagaagattctgtacttcgagaattttggttgtgaacaaatgcaactttacc 4129742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 77
Target Start/End: Original strand, 4119679 - 4119710
Alignment:
Q  46 gaattttgcttgtgaacaaatgcaactttacc 77  Q
    ||||||||||||||||||||||||||||||||    
T  4119679 gaattttgcttgtgaacaaatgcaactttacc 4119710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 74 - 403
Target Start/End: Complemental strand, 51424733 - 51424404
Alignment:
Q  74 taccctggcggttgaaagtcaagtgaggccagctatattacactcatccgtggcgacatgcatgtggaattcctcttccatctttgtcgtctcttgtttt 173  Q
    |||||||||||| ||  |||||||| | |  ||| ||||||| || || || ||| |||||||||||||||||||||||||||| |||||||||||||||    
T  51424733 taccctggcggtggagtgtcaagtgtgacatgctttattacattcttcggttgcggcatgcatgtggaattcctcttccatcttcgtcgtctcttgtttt 51424634  T
Q  174 ttcagagnnnnnnnn-ctttgaaaaatataatacaaatagaatgacaacaattcagataaatatcatctaacaaacatatattggacatcccccatccat 272  Q
    |||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||    
T  51424633 ttcagagtttttttttctttgaaaaatataatacaaatagaatgacaacaattcagataaatatcatctaacaaacatatattggacatccctcttccat 51424534  T
Q  273 taaatgttgatgaaggaaatgaaagactaataaagaaaatannnnnnngtaaatatataccagaagatataatcaagacaatgaccctcactttgattca 372  Q
    |||||||||||||||||||||||||||||||||||||||||       |||||||| |||||||| ||||||||||||||||||||||| ||||||||||    
T  51424533 taaatgttgatgaaggaaatgaaagactaataaagaaaata-atttttgtaaatatgtaccagaaaatataatcaagacaatgaccctcgctttgattca 51424435  T
Q  373 tgtatatacctcaattatattttctctgata 403  Q
    |||||||||||||||||||||||||||||||    
T  51424434 tgtatatacctcaattatattttctctgata 51424404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 74 - 402
Target Start/End: Complemental strand, 11686702 - 11686373
Alignment:
Q  74 taccctggcggttgaaagtcaagtgaggccagctatattacactcatccgtggcgacatgcatgtggaattcctcttccatctttgtcgtctcttgtttt 173  Q
    |||||||||||| ||  |||||||| |||  ||| ||||||| || |  |||||| |||||||||||| ||||||||||||||| |||||||||||||||    
T  11686702 taccctggcggtggagtgtcaagtgtggcatgctttattacattctttggtggcggcatgcatgtggagttcctcttccatcttcgtcgtctcttgtttt 11686603  T
Q  174 ttcagagnnnnnnnn-ctttgaaaaatataatacaaatagaatgacaacaattcagataaatatcatctaacaaacatatattggacatcccccatccat 272  Q
    |||||||         ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  11686602 ttcagagtttttttttctttgaaaaatataatacaaatagaatgacaacaactcagataaatatcatctaacaaacatatattggacatcccccatccat 11686503  T
Q  273 taaatgttgatgaaggaaatgaaagactaataaagaaaatannnnnnngtaaatatataccagaagatataatcaagacaatgaccctcactttgattca 372  Q
    ||||||||||| ||||||||||||||||||||  |||||||       |||||||| |||||| ||||||||| | ||||||||||||||||||||||||    
T  11686502 taaatgttgataaaggaaatgaaagactaatagtgaaaatatttttttgtaaatatgtaccagtagatataattaggacaatgaccctcactttgattca 11686403  T
Q  373 tgtatatacctcaattatattttctctgat 402  Q
    ||||||||||||||||||||||||||||||    
T  11686402 tgtatatacctcaattatattttctctgat 11686373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 74 - 387
Target Start/End: Original strand, 7054633 - 7054945
Alignment:
Q  74 taccctggcggttgaaagtcaagtgaggccagctatattacactcatccgtggcgacatgcatgtggaattcctcttccatctttgtcgtctcttgtttt 173  Q
    |||||||||||  ||  |||||||| |||  ||| ||||||| || || |||||| ||||||||| |||||||||||||||||| |||||||||||||||    
T  7054633 taccctggcggcggagtgtcaagtgtggcatgctttattacattcttcggtggcggcatgcatgttgaattcctcttccatcttcgtcgtctcttgtttt 7054732  T
Q  174 ttcagagnnnnnnnnctttgaaaaatataatacaaatagaatgacaacaattcagataaatatcatctaacaaacatatattggacatcccccatccatt 273  Q
    |||||||        |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  7054733 ttcagagttttttttctttgaaaaatataatactaatagaatgacaacaattcagataaatatcatctaacaaacatatattggacatccctcatccatt 7054832  T
Q  274 aaatgttgatgaaggaaatgaaagactaataaagaaaatannnnnnngtaaatatataccagaagatataatcaagacaatgaccctcactttgattcat 373  Q
    ||||||||||||||||||||||||||||||||||||||||       |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  7054833 aaatgttgatgaaggaaatgaaagactaataaagaaaata-ttttttgtaaatatgtaccagaagatataatcaagacaatgaccctcactttgattcat 7054931  T
Q  374 gtatatacctcaat 387  Q
    ||||||||||||||    
T  7054932 gtatatacctcaat 7054945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 110 - 387
Target Start/End: Original strand, 14462492 - 14462769
Alignment:
Q  110 attacactcatccgtggcgacatgcatgtggaattcctcttccatctttgtcgtctcttgttttttcagagnnnnnnnn-ctttgaaaaatataatacaa 208  Q
    |||||| || || |||||| |||||||||||||||||||||||||||| |||||||||| |||||||||||         ||||||||||||||||||||    
T  14462492 attacattcttcggtggcggcatgcatgtggaattcctcttccatcttcgtcgtctctttttttttcagagtttttttttctttgaaaaatataatacaa 14462591  T
Q  209 atagaatgacaacaattcagataaatatcatctaacaaacatatattggacatcccccatccattaaatgttgatgaaggaaatgaaagactaataaaga 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14462592 atagaatgacaacaattcagataaatatcatctaacaaacatatattggacatcccccatccattaaatgttgatgaaggaaatgaaagactaataaaga 14462691  T
Q  309 aaatannnnnnngtaaatatataccagaagatataatcaagacaatgaccctcactttgattcatgtatatacctcaat 387  Q
    |||||       |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  14462692 aaata-ttttttgtaaatatgtaccagaagatataatcaagacaatgaccatcactttgattcatgtatatacctcaat 14462769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 184; Significance: 2e-99; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 74 - 383
Target Start/End: Complemental strand, 38980847 - 38980539
Alignment:
Q  74 taccctggcggttgaaagtcaagtgaggccagctatattacactcatccgtggcgacatgcatgtggaattcctcttccatctttgtcgtctcttgtttt 173  Q
    |||||||||||  ||  |||||||| |||  ||| ||||||| || || |||||| |||||||||||||||||||||||||||| | |||||||||||||    
T  38980847 taccctggcggcggagtgtcaagtgtggcatgctttattacattcttcggtggcggcatgcatgtggaattcctcttccatcttcgccgtctcttgtttt 38980748  T
Q  174 ttcagagnnnnnnnnctttgaaaaatataatacaaatagaatgacaacaattcagataaatatcatctaacaaacatatattggacatcccccatccatt 273  Q
    |||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  38980747 ttcagagttttttttctttgaaaaatataatacaaatagaatgacaacaattcagataaatatcatctaacaaacatatattggacatcccccatccatg 38980648  T
Q  274 aaatgttgatgaaggaaatgaaagactaataaagaaaatannnnnnngtaaatatataccagaagatataatcaagacaatgaccctcactttgattcat 373  Q
    ||||||||||||| |||||||| |||||||||||||||||       |||||||| || |||||||||||||||||||||||||||||||||||||||||    
T  38980647 aaatgttgatgaatgaaatgaatgactaataaagaaaata-ttttttgtaaatatgtatcagaagatataatcaagacaatgaccctcactttgattcat 38980549  T
Q  374 gtatatacct 383  Q
    ||||||||||    
T  38980548 gtatatacct 38980539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0320 (Bit Score: 106; Significance: 7e-53; HSPs: 1)
Name: scaffold0320
Description:

Target: scaffold0320; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 123 - 269
Target Start/End: Complemental strand, 13455 - 13310
Alignment:
Q  123 gtggcgacatgcatgtggaattcctcttccatctttgtcgtctcttgttttttcagagnnnnnnnnctttgaaaaatataatacaaatagaatgacaaca 222  Q
    |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||    
T  13455 gtggcggcatgcatgtggaattcctcttccatcttcgtcgtctcttgttttttcagagttttttt-ctttgaaaaatataatacaaatagaatgacaaca 13357  T
Q  223 attcagataaatatcatctaacaaacatatattggacatcccccatc 269  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||    
T  13356 attcagataaatatcatataacaaacatatattggacatcccccatc 13310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0442 (Bit Score: 102; Significance: 2e-50; HSPs: 2)
Name: scaffold0442
Description:

Target: scaffold0442; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 258 - 440
Target Start/End: Original strand, 12622 - 12801
Alignment:
Q  258 acatcccccatccattaaatgttgatgaaggaaatgaaagactaataaagaaaatannnnnnngtaaatatataccagaagatataatcaagacaatgac 357  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||       |||||||| || ||||||||||| |||||||||||||    
T  12622 acatcccccacccattaaatgttgatgaaggaaatgaaagactaataaagaaaatatttttt-gtaaatatgtatcagaagatatattcaagacaatgac 12720  T
Q  358 cctcactttgattcatgtatatacctcaattatattttctctgataannnnnnnncatttccaatttgatatggattttttct 440  Q
    ||||||||||||||||||||||||||||||||||  |||||| ||||        ||||||||||||||||||||||||||||    
T  12721 cctcactttgattcatgtatatacctcaattata--ttctctcataattttttttcatttccaatttgatatggattttttct 12801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0442; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 74 - 222
Target Start/End: Original strand, 12476 - 12624
Alignment:
Q  74 taccctggcggttgaaagtcaagtgaggccagctatattacactcatccgtggcgacatgcatgtggaattcctcttccatctttgtcgtctcttgtttt 173  Q
    ||||||||||| |||  |||||||| |||  ||| ||||||| || || |||||| |||||||||||||||||||||||||||| |||||||||||||||    
T  12476 taccctggcggctgagtgtcaagtgtggcatgctttattacattcttcggtggcggcatgcatgtggaattcctcttccatcttcgtcgtctcttgtttt 12575  T
Q  174 ttcagagnnnnnnnnctttgaaaaatataatacaaatagaatgacaaca 222  Q
    |||||||        ||||||||||||||||||||||||||||||||||    
T  12576 ttcagagttttttttctttgaaaaatataatacaaatagaatgacaaca 12624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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