View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7761_low_12 (Length: 429)
Name: NF7761_low_12
Description: NF7761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7761_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 20 - 421
Target Start/End: Original strand, 8465949 - 8466349
Alignment:
| Q |
20 |
ttcttagcaatagaaaaggaatttggattattaatcatttgacgatcaatagaagctagaatccaagttataatctgagcgtactttgtctgctaagctg |
119 |
Q |
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| T |
8465949 |
ttcttagcaatagaaaaggaatttggattattaatcatttgactatcaatagaagctagaatccaagttataatctgagcgtactttgtctgctaagctg |
8466048 |
T |
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| Q |
120 |
ccatcattgcagcatctgcagcaggcgcagaggaggtgccatctacatgacctcacaagcctttccctttaacaaacctcttgaattgaaactcccatgc |
219 |
Q |
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| T |
8466049 |
ccatcatagcagcatctgcagcgggcgcagaggaggtgccatctacatgacctcacaagcctttccctttaacaaacctcttgaattgaaactcccatgc |
8466148 |
T |
|
| Q |
220 |
tgaannnnnnnnnnnccggtaaaacgaacaaaacaattatccttcgacttctctgtcaacatgatggagataccacactaaactacaaacaaaataaaga |
319 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8466149 |
tgaa-taatttttttccggtaaaacgaacaaaacaattatccttcgacttctctgtcaacatgatggagataccacactaaactacaaacaaaataaaga |
8466247 |
T |
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| Q |
320 |
gaaaattcaatatgttatcattttaaacgtaaacgattaccttgtttcactggtttcatgttaaattttccatcttctattagtacatgcacaagaataa |
419 |
Q |
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|||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8466248 |
gaaaattcaatatgttatcattttaaacctaatcgattaccttgtttcaccggtttcatgttaaattttccatcttctattagtacatgcacaagaataa |
8466347 |
T |
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| Q |
420 |
tc |
421 |
Q |
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| T |
8466348 |
tc |
8466349 |
T |
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