View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7761_low_13 (Length: 422)
Name: NF7761_low_13
Description: NF7761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7761_low_13 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 398; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 17 - 422
Target Start/End: Complemental strand, 31704993 - 31704588
Alignment:
| Q |
17 |
agatatagattgagcagaaatgataacattaacacagtaatgaaagcccacaaatactattttcaagcagctcaacatataaagataaatatcattatgc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31704993 |
agatatagattgagcagaaatgataacattaacacagtaatgaaagcccacaaatactattttcaagcagctcaacatataaagataaatatcattatgc |
31704894 |
T |
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| Q |
117 |
tcctaaacaaaaagatcttataatatagatacttagattaaccacattacaacattttcaaagtttctagttggaatccaagtaaaagcttcacagagtt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
31704893 |
tcctaaacaaaaagatcttataatatagatacttagattaaccatattacaacattttcaaagtttctagttggaatccaagtaaaagcttgacagagtt |
31704794 |
T |
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| Q |
217 |
atatttctttccctttctgtcacacaaagcaacagaccgaaatccatgtcttagctctgatactggcaaacaagtctgtccagcaaaatcatcttttgtc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31704793 |
atatttctttccctttctgtcacacaaagcaacagaccgaaatccatgtcttagctctgatactggcaaacaagtctgtccagcaaaatcatcttttgtc |
31704694 |
T |
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| Q |
317 |
tgatctttatcctttacttcgatccggagcaacgcgagctccggaactgtcaaacggaactcaaactcttcgtcccaaatgggattccaattgtccatct |
416 |
Q |
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| T |
31704693 |
tgatctttatcctttacttcgatccggagcaacgcgagctccggaactgtcaaacggaactcaaactcttcgtcccaaatgggattccaattgtccatct |
31704594 |
T |
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| Q |
417 |
ttacac |
422 |
Q |
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| T |
31704593 |
ttacac |
31704588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 176 - 422
Target Start/End: Complemental strand, 31654466 - 31654220
Alignment:
| Q |
176 |
aaagtttctagttggaatccaagtaaaagcttcacagagttatatttctttccctttctgtcacacaaagcaacagaccgaaatccatgtcttagctctg |
275 |
Q |
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|||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31654466 |
aaagtttcaaggtggaatccaagtaaaagcttgacagagttatatttctttccctttctgtcacacaaagcaacagaccgaaatccatgtcttagctctg |
31654367 |
T |
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| Q |
276 |
atactggcaaacaagtctgtccagcaaaatcatcttttgtctgatctttatcctttacttcgatccggagcaacgcgagctccggaactgtcaaacggaa |
375 |
Q |
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|||| ||||||||||| |||||||||||||| ||| | || ||||||||| || ||||||||||||||||| || ||||| ||||| ||||| |||| |
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| T |
31654366 |
atacaggcaaacaagtttgtccagcaaaatcgtctgatcccttatctttatctttcacttcgatccggagcaatgcaagctctggaacagtcaattggaa |
31654267 |
T |
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| Q |
376 |
ctcaaactcttcgtcccaaatgggattccaattgtccatctttacac |
422 |
Q |
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| T |
31654266 |
ttcgaactcttcgtcccaaacaggataccaattgtccatctttacac |
31654220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 319 - 412
Target Start/End: Complemental strand, 31717903 - 31717810
Alignment:
| Q |
319 |
atctttatcctttacttcgatccggagcaacgcgagctccggaactgtcaaacggaactcaaactcttcgtcccaaatgggattccaattgtcc |
412 |
Q |
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|||||||||||| ||| ||||||||||||| |||||||||||| | |||||||| | | ||| ||||||||||||| |||| ||| |||||| |
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| T |
31717903 |
atctttatccttcactgcgatccggagcaaagcgagctccggatcactcaaacgggatttgaacacttcgtcccaaataggataccagttgtcc |
31717810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 215 - 267
Target Start/End: Complemental strand, 31717969 - 31717917
Alignment:
| Q |
215 |
ttatatttctttccctttctgtcacacaaagcaacagaccgaaatccatgtct |
267 |
Q |
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| T |
31717969 |
ttatatttctttccctttctgtcgcacaaagcaacaaaccaaaatccttgtct |
31717917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 93; Significance: 4e-45; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 196 - 396
Target Start/End: Original strand, 44901221 - 44901421
Alignment:
| Q |
196 |
aagtaaaagcttcacagagttatatttctttccctttctgtcacacaaagcaacagaccgaaatccatgtcttagctctgatactggcaaacaagtctgt |
295 |
Q |
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|||||||||||| ||||||||| ||||||| ||||||| |||||||||| |||| |||||||||||||||||||||||||||| |||||||| |||||| |
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| T |
44901221 |
aagtaaaagcttaacagagttaaatttcttcccctttcagtcacacaaacgaacaaaccgaaatccatgtcttagctctgatacaggcaaacaggtctgt |
44901320 |
T |
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| Q |
296 |
ccagcaaaatcatcttttgtctgatctttatcctttacttcgatccggagcaacgcgagctccggaactgtcaaacggaactcaaactcttcgtcccaaa |
395 |
Q |
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| T |
44901321 |
ccggaaaaatcatctgtcgtcatatctttatccttcagttcgatctggagcaaagcaagctctggaatggttaatcggaatacaaactcttcgtcccaaa |
44901420 |
T |
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| Q |
396 |
t |
396 |
Q |
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| T |
44901421 |
t |
44901421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 313
Target Start/End: Complemental strand, 35510812 - 35510755
Alignment:
| Q |
256 |
aaatccatgtcttagctctgatactggcaaacaagtctgtccagcaaaatcatctttt |
313 |
Q |
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| T |
35510812 |
aaatccaagttttatctctgaaactggcaaacatgtttgtccagcaaagtcatctttt |
35510755 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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