View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7761_low_15 (Length: 378)
Name: NF7761_low_15
Description: NF7761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7761_low_15 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 378
Target Start/End: Original strand, 46266417 - 46266794
Alignment:
| Q |
1 |
tcattgacacattgttatagataatcacattggccgacactaacatgtgtcagacaccggacacaccttcaatctgagatgtcagtgttacatagcatat |
100 |
Q |
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| T |
46266417 |
tcattgacacattgttatagataatcacattggccgacactaacatgtgtcagacaccggacacaccttcaatttgagatgtcagtgttacatagaatat |
46266516 |
T |
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| Q |
101 |
ataataaccacgtgactcttcccctcattgataataactacagacagaagcaccatcctcgttcttcaattatcaaataaaaactcatgtatgtaccata |
200 |
Q |
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| T |
46266517 |
ataataaccacgtgactcttcccctcattaataataactacagacagaagcaccatcctcgttcttcaattatcaaataaaaactcatgtatgtaccata |
46266616 |
T |
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| Q |
201 |
atatgtatatgatgtactatttttacaaccaatagattatgtgcatgaaaagtaagttatgaaagtgaataataaataaaaagatgttataattaacctg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46266617 |
atatgtatatgatgtactatttttacaaccaatagattatgtgcatgaaaagtaagttatgaaagtgaataataaataaaaagatgttataattaacctg |
46266716 |
T |
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| Q |
301 |
agacaattcggcatttgtgttggtcacatctgtgatccaaaaatcacagaactatctgaaatgaatcaccagcggagc |
378 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
46266717 |
agacaattcggcatttgtgttggtcatatctgtgatccaaaaatcacagaactatctgaaatgattcaccagcggagc |
46266794 |
T |
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