View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7761_low_18 (Length: 361)
Name: NF7761_low_18
Description: NF7761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7761_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 330
Target Start/End: Original strand, 6867423 - 6867753
Alignment:
| Q |
1 |
tacctagccctgctgatattgttgttgagctgtgaccagtgccaaaactatcaaattcactctcagagcgttttgtaaacccacttaatccatctttctg |
100 |
Q |
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| T |
6867423 |
tacctagccctgctgatattgttgttgagctgtgaccagtgccaaaaatatcaaattcactctcagagcgttttgtaaacccacttaatccatctttctg |
6867522 |
T |
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| Q |
101 |
cctcaaagtatgcatcttattccttctaccagtcagaattttatgtggatatgactgcaaaaattcacac-aagtgtcatcatcccctagaaagtcaacc |
199 |
Q |
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| T |
6867523 |
cctcaaagtatgcatcttattccttctaccagtcagaattttatgtggatatgactgcaaaaattcacacaaagtcatatcatcccctagaaagtcaacc |
6867622 |
T |
|
| Q |
200 |
cttcaaaaaataatcacctagtactaataggagagtagtatgatcaacctgatgacctacatcccacaagattttgtcaataggagcattgaaaacataa |
299 |
Q |
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| T |
6867623 |
cttcaaaaaataatcatctagtactaataggagagtagtatgatcaacctgatgacctacatcccacaagattttgtcaataggagcattgaaaacataa |
6867722 |
T |
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| Q |
300 |
tggagggcaacagtgagttctacaacaccaa |
330 |
Q |
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| T |
6867723 |
tggagggcaacagtgagttccacaacaccaa |
6867753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 24 - 163
Target Start/End: Complemental strand, 49145926 - 49145787
Alignment:
| Q |
24 |
gttgagctgtgaccagtgccaaaactatcaaattcactctcagagcgttttgtaaacccacttaatccatctttctgcctcaaagtatgcatcttattcc |
123 |
Q |
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| T |
49145926 |
gttgaactatgaccagtgccaaaagaatcatattcactctcagaacgttttgtaaatccagacaatccattagtctgtctcatggtatgcatcttatccc |
49145827 |
T |
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| Q |
124 |
ttctaccagtcagaattttatgtggatatgactgcaaaaa |
163 |
Q |
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| T |
49145826 |
ttctaccagtaagtattttatgagggtatgactgcaaaaa |
49145787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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