View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7761_low_22 (Length: 310)
Name: NF7761_low_22
Description: NF7761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7761_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 19 - 306
Target Start/End: Original strand, 28574438 - 28574723
Alignment:
| Q |
19 |
agaataattatgttagtgatctctatctaaattttgaataattttaaggtcaacatatagaattgtaattagaaaacatacttggaaacttcaacggtct |
118 |
Q |
| |
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|||||||||| |||||||| ||||||||||||||||||| || ||||||||||||| || || ||||||||||||||||||||||||||||| ||||| |
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| T |
28574438 |
agaataattacattagtgatttctatctaaattttgaatagttataaggtcaacata--gatttttaattagaaaacatacttggaaacttcaatggtct |
28574535 |
T |
|
| Q |
119 |
cattctgattcatgaacctaactatggtggagttgattttagcaagtttctctaaacatatcaaatccttctcagccttcaaatcatggatgaatgtact |
218 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
28574536 |
cattctgattcctgaacctaactatggtggaattgattttagcaagttcctctaaacatatcaaatccttctcagccttcaaatcatggatgaatgtgct |
28574635 |
T |
|
| Q |
219 |
tttatccataaatcttgacaaaccatagtgaagtggactctgaagagtgtttgcaacatgtatagcttcattatgttctttgtttctt |
306 |
Q |
| |
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||||||||||||||||||||| ||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||| ||||||| |
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| T |
28574636 |
tttatccataaatcttgacaagccatagtgaagaggattctgaagagtgtttacaacatgtatagcttcattatgttcttggtttctt |
28574723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 19 - 306
Target Start/End: Original strand, 28579489 - 28579775
Alignment:
| Q |
19 |
agaataattatgttagtgatctctatctaaattttgaataattttaaggtcaacatatagaattgtaattagaaaa-catacttggaaacttcaacggtc |
117 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||||||| || ||||||||||||| || || ||||||||||| ||||||||||||| |||| |||| |
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|
| T |
28579489 |
agaacaattacgttagtgatctctatctaaattttgaatagttataaggtcaacata--gatttttaattagaaaaacatacttggaaacctcaatggtc |
28579586 |
T |
|
| Q |
118 |
tcattctgattcatgaacctaactatggtggagttgattttagcaagtttctctaaacatatcaaatccttctcagccttcaaatcatggatgaatgtac |
217 |
Q |
| |
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||||||||||||||||||||||| |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
28579587 |
tcattctgattcatgaacctaaccatggtggaattgattttagcaagttcctctaaacatatcaaatccttctcagccttcaaatcatggatgaatgtgc |
28579686 |
T |
|
| Q |
218 |
ttttatccataaatcttgacaaaccatagtgaagtggactctgaagagtgtttgcaacatgtatagcttcattatgttctttgtttctt |
306 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
28579687 |
ttttatccatgaatcttgacaagccatagtgaagtggattctgaagagtgtttgcaacatgtatagcttcattatgttcttggtttctt |
28579775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 19 - 306
Target Start/End: Original strand, 28585637 - 28585922
Alignment:
| Q |
19 |
agaataattatgttagtgatctctatctaaattttgaataattttaaggtcaacatatagaattgtaattagaaaacatacttggaaacttcaacggtct |
118 |
Q |
| |
|
|||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||| || || ||||||||||||||||||||||||||||| ||||| |
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|
| T |
28585637 |
agaataattacgttagtgacctctatctaaattttgaataattataaggtcaacata--gatttttaattagaaaacatacttggaaacttcaatggtct |
28585734 |
T |
|
| Q |
119 |
cattctgattcatgaacctaactatggtggagttgattttagcaagtttctctaaacatatcaaatccttctcagccttcaaatcatggatgaatgtact |
218 |
Q |
| |
|
|||| ||||||||||||| ||||||| |||| |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||| || |
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|
| T |
28585735 |
cattgtgattcatgaacccaactatgttggaattgattttagcaagttcttctaaacatatcaaatccttctcttccttcaaatcatggattaatgtgct |
28585834 |
T |
|
| Q |
219 |
tttatccataaatcttgacaaaccatagtgaagtggactctgaagagtgtttgcaacatgtatagcttcattatgttctttgtttctt |
306 |
Q |
| |
|
||||||||| ||||||||||| || |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
28585835 |
tttatccatgaatcttgacaagccgtagtgaagtggattctgaagagtgtttgcaacatgtatagcttcattatgttcttggtttctt |
28585922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 20 - 298
Target Start/End: Original strand, 26315493 - 26315769
Alignment:
| Q |
20 |
gaataattatgttagtgatctctatctaaattttgaataattttaaggtcaacatatagaattgtaattagaaaacatacttggaaacttcaacggtctc |
119 |
Q |
| |
|
||||||||| ||||||||| |||| ||| | ||||||||| ||| || ||| |||| || |||||||||||||||||||||||||||| |||||| |
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|
| T |
26315493 |
gaataattaaattagtgatccctatgtaatatgtgaataattataaagtaaacctatat--ttttaattagaaaacatacttggaaacttcagtggtctc |
26315590 |
T |
|
| Q |
120 |
attctgattcatgaacctaactatggtggagttgattttagcaagtttctctaaacatatcaaatccttctcagccttcaaatcatggatgaatgtactt |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||| ||||||||||||||| ||| |
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| T |
26315591 |
attctgattcatgaacctaactatggtggagttgattttagcaagttcctctaaacatagcaaatccttctcatccttcgaatcatggatgaatgcgctt |
26315690 |
T |
|
| Q |
220 |
ttatccataaatcttgacaaaccatagtgaagtggactctgaagagtgtttgcaacatgtatagcttcattatgttctt |
298 |
Q |
| |
|
||||||||||||||||| || ||||| ||||||||| ||||||||||||||||||||| |||||||| ||||||||||| |
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|
| T |
26315691 |
ttatccataaatcttgataagccataatgaagtggattctgaagagtgtttgcaacatatatagcttgattatgttctt |
26315769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 41 - 306
Target Start/End: Original strand, 28567632 - 28567895
Alignment:
| Q |
41 |
ctatctaaattttgaataattttaaggtcaacatatagaattgtaattagaaaacatacttggaaacttcaacggtctcattctgattcatgaacctaac |
140 |
Q |
| |
|
|||| |||| ||||||||||| ||| |||||||| || || ||| |||||||||||||||||||||||| ||| |||||||| |||||||||||||| |
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| T |
28567632 |
ctatgtaaaatttgaataattataaagtcaacatctat--ttttaaccagaaaacatacttggaaacttcaatggtttcattctggttcatgaacctaac |
28567729 |
T |
|
| Q |
141 |
tatggtggagttgattttagcaagtttctctaaacatatcaaatccttctcagccttcaaatcatggatgaatgtacttttatccataaatcttgacaaa |
240 |
Q |
| |
|
|||| || |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |
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|
| T |
28567730 |
tatgccagaattgattttagcaagttcctctaaacatatcaaatccttctcagccttcaaatcatgcatgaatgtgtttttatccataaatcttgacaat |
28567829 |
T |
|
| Q |
241 |
ccatagtgaagtggactctgaagagtgtttgcaacatgtatagcttcattatgttctttgtttctt |
306 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| || ||| || |||||||||| ||||||| |
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|
| T |
28567830 |
ccatagtgaagtggattctgaagagtgtttgcaacatataaagcatccttatgttcttggtttctt |
28567895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 97 - 286
Target Start/End: Original strand, 20616878 - 20617067
Alignment:
| Q |
97 |
tacttggaaacttcaacggtctcattctgattcatgaacctaactatggtggagttgattttagcaagtttctctaaacatatcaaatccttctcagcct |
196 |
Q |
| |
|
|||||| ||||||||||| |||| || | ||||||||| |||||||| ||||||| ||||||||||||| |||||||| ||| | | |||| ||||| |
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|
| T |
20616878 |
tacttgaaaacttcaacgctctcgtttttgttcatgaacttaactatgctggagttcattttagcaagttcatctaaacagatccatttgttcttagcct |
20616977 |
T |
|
| Q |
197 |
tcaaatcatggatgaatgtacttttatccataaatcttgacaaaccatagtgaagtggactctgaagagtgtttgcaacatgtatagctt |
286 |
Q |
| |
|
||||||||| ||||||| | |||||||||||||||||||||||||||||||||| || ||||||||||||| ||||| |||||||| |
|
|
| T |
20616978 |
tcaaatcattgatgaatatgcttttatccataaatcttgacaaaccatagtgaatagggtattgaagagtgtttgaaacatatatagctt |
20617067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 91 - 298
Target Start/End: Original strand, 24071128 - 24071335
Alignment:
| Q |
91 |
aaaacatacttggaaacttcaacggtctcattctgattcatgaacctaactatggtggagttgattttagcaagtttctctaaacatatcaaatccttct |
190 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| |||||||||||||||||| |||||||||| |||||||||| || |||||||||||||||||| | |
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|
| T |
24071128 |
aaaacatacttggaaacttcagtggtctcattctggttcatgaacctaactatgctggagttgatattagcaagttcctttaaacatatcaaatcctttt |
24071227 |
T |
|
| Q |
191 |
cagccttcaaatcatggatgaatgtacttttatccataaatcttgacaaaccatagtgaagtggactctgaagagtgtttgcaacatgtatagcttcatt |
290 |
Q |
| |
|
|||||||||||| |||||||||| | || ||||||||||||||||||| ||||| ||||||||| ||||||||| ||||||||||| || ||||||||| |
|
|
| T |
24071228 |
cagccttcaaattatggatgaatatgtttctatccataaatcttgacaagccataatgaagtggattctgaagagcgtttgcaacatataaagcttcatt |
24071327 |
T |
|
| Q |
291 |
atgttctt |
298 |
Q |
| |
|
|||||||| |
|
|
| T |
24071328 |
atgttctt |
24071335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 91 - 298
Target Start/End: Complemental strand, 24079608 - 24079401
Alignment:
| Q |
91 |
aaaacatacttggaaacttcaacggtctcattctgattcatgaacctaactatggtggagttgattttagcaagtttctctaaacatatcaaatccttct |
190 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| |||||||||||||||||| |||||||||| |||||||||| || |||||||||||||||||| | |
|
|
| T |
24079608 |
aaaacatacttggaaacttcagtggtctcattctggttcatgaacctaactatgctggagttgatattagcaagttcctttaaacatatcaaatcctttt |
24079509 |
T |
|
| Q |
191 |
cagccttcaaatcatggatgaatgtacttttatccataaatcttgacaaaccatagtgaagtggactctgaagagtgtttgcaacatgtatagcttcatt |
290 |
Q |
| |
|
|||||||||||| |||||||||| | || ||||||||||||||||||| ||||| ||||||||| ||||||||| ||||||||||| || ||||||||| |
|
|
| T |
24079508 |
cagccttcaaattatggatgaatatgtttctatccataaatcttgacaagccataatgaagtggattctgaagagcgtttgcaacatataaagcttcatt |
24079409 |
T |
|
| Q |
291 |
atgttctt |
298 |
Q |
| |
|
|||||||| |
|
|
| T |
24079408 |
atgttctt |
24079401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 98 - 277
Target Start/End: Complemental strand, 2601804 - 2601625
Alignment:
| Q |
98 |
acttggaaacttcaacggtctcattctgattcatgaacctaactatggtggagttgattttagcaagtttctctaaacatatcaaatccttctcagcctt |
197 |
Q |
| |
|
||||||||||||||| | | ||||||||||||||||||||||||||| |||| |||||||||||||||| ||||||||| || | || || ||||| |
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|
| T |
2601804 |
acttggaaacttcaatgatttcattctgattcatgaacctaactatgctggaattgattttagcaagttcttctaaacatgtccattcattagtggcctt |
2601705 |
T |
|
| Q |
198 |
caaatcatggatgaatgtacttttatccataaatcttgacaaaccatagtgaagtggactctgaagagtgtttgcaacat |
277 |
Q |
| |
|
||||| | | |||| | ||||| ||||| || |||||||| ||||||||||||||| |||||||||||| ||||| |
|
|
| T |
2601704 |
caaataacttaggaatatgcttttttccattaaccttgacaagccatagtgaagtggatatcgaagagtgtttgtaacat |
2601625 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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