View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7761_low_24 (Length: 288)

Name: NF7761_low_24
Description: NF7761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7761_low_24
NF7761_low_24
[»] chr8 (13 HSPs)
chr8 (14-265)||(32166640-32166890)
chr8 (14-202)||(33897618-33897807)
chr8 (3-194)||(35574634-35574827)
chr8 (2-64)||(12736074-12736136)
chr8 (1-73)||(6630531-6630603)
chr8 (107-195)||(29969153-29969241)
chr8 (109-159)||(6803876-6803926)
chr8 (109-200)||(6630316-6630406)
chr8 (2-81)||(42054597-42054676)
chr8 (2-52)||(29969129-29969179)
chr8 (2-39)||(29093581-29093618)
chr8 (2-63)||(31475059-31475120)
chr8 (2-62)||(6630375-6630435)
[»] chr7 (18 HSPs)
chr7 (5-202)||(34891414-34891612)
chr7 (5-194)||(42012690-42012879)
chr7 (11-202)||(3191569-3191760)
chr7 (32-194)||(31171316-31171480)
chr7 (3-84)||(32138880-32138961)
chr7 (2-64)||(23944096-23944158)
chr7 (16-194)||(31152738-31152919)
chr7 (11-73)||(32962393-32962455)
chr7 (11-69)||(34891380-34891438)
chr7 (2-156)||(22593565-22593722)
chr7 (2-64)||(27651503-27651564)
chr7 (29-187)||(8900670-8900831)
chr7 (109-200)||(33362347-33362436)
chr7 (11-62)||(33362414-33362465)
chr7 (30-68)||(7463864-7463902)
chr7 (11-61)||(8354394-8354444)
chr7 (48-84)||(27651379-27651415)
chr7 (32-84)||(29152350-29152402)
[»] chr5 (20 HSPs)
chr5 (11-195)||(7113616-7113804)
chr5 (1-193)||(40483739-40483933)
chr5 (3-81)||(2243310-2243388)
chr5 (1-84)||(973111-973194)
chr5 (107-195)||(2243249-2243335)
chr5 (14-81)||(14138548-14138615)
chr5 (107-208)||(17739908-17740009)
chr5 (30-68)||(972845-972883)
chr5 (35-84)||(7215322-7215371)
chr5 (11-84)||(17736756-17736829)
chr5 (11-68)||(39808234-39808291)
chr5 (108-208)||(7215230-7215329)
chr5 (29-73)||(37077663-37077707)
chr5 (98-213)||(39730369-39730484)
chr5 (3-49)||(5205532-5205578)
chr5 (5-63)||(26105491-26105549)
chr5 (1-63)||(40483703-40483764)
chr5 (11-64)||(22780346-22780399)
chr5 (11-84)||(37077760-37077833)
chr5 (15-64)||(39730312-39730361)
[»] chr2 (21 HSPs)
chr2 (2-202)||(13712743-13712945)
chr2 (1-194)||(9050117-9050313)
chr2 (1-84)||(16576248-16576331)
chr2 (2-81)||(16863459-16863538)
chr2 (32-194)||(38576791-38576955)
chr2 (2-73)||(38576930-38577001)
chr2 (105-162)||(38576707-38576764)
chr2 (14-62)||(2909844-2909892)
chr2 (15-208)||(16576290-16576486)
chr2 (124-194)||(9931337-9931406)
chr2 (1-46)||(17606620-17606665)
chr2 (110-194)||(25606423-25606506)
chr2 (1-81)||(28282653-28282733)
chr2 (30-73)||(34176654-34176697)
chr2 (1-80)||(35370402-35370481)
chr2 (2-84)||(25606366-25606448)
chr2 (2-84)||(35371111-35371193)
chr2 (109-202)||(28282699-28282791)
chr2 (4-64)||(2248931-2248991)
chr2 (32-84)||(28282824-28282876)
chr2 (11-63)||(35373728-35373780)
[»] chr4 (13 HSPs)
chr4 (26-202)||(25234217-25234393)
chr4 (30-208)||(25062361-25062544)
chr4 (11-129)||(15131577-15131698)
chr4 (5-158)||(54000043-54000199)
chr4 (5-73)||(20512823-20512891)
chr4 (1-85)||(22050851-22050935)
chr4 (15-78)||(4115389-4115452)
chr4 (2-63)||(25062340-25062401)
chr4 (11-68)||(54000218-54000275)
chr4 (109-202)||(55897600-55897693)
chr4 (2-73)||(11020074-11020144)
chr4 (107-200)||(22050903-22050995)
chr4 (6-62)||(22050719-22050775)
[»] chr3 (11 HSPs)
chr3 (5-170)||(39341110-39341278)
chr3 (11-167)||(42091793-42091951)
chr3 (5-83)||(46303371-46303449)
chr3 (1-84)||(34761945-34762028)
chr3 (2-64)||(20519289-20519351)
chr3 (107-208)||(54437848-54437949)
chr3 (28-85)||(31758242-31758298)
chr3 (109-166)||(39341283-39341340)
chr3 (30-84)||(54437806-54437860)
chr3 (16-73)||(48646423-48646479)
chr3 (14-70)||(54437651-54437707)
[»] chr1 (22 HSPs)
chr1 (3-84)||(34601435-34601516)
chr1 (14-84)||(46080971-46081041)
chr1 (16-84)||(10775163-10775231)
chr1 (5-131)||(7997185-7997314)
chr1 (3-73)||(52432672-52432742)
chr1 (11-84)||(24873765-24873839)
chr1 (11-84)||(24874598-24874672)
chr1 (32-121)||(44342055-44342145)
chr1 (2-84)||(49897870-49897952)
chr1 (3-84)||(68097-68178)
chr1 (107-200)||(3232179-3232271)
chr1 (115-200)||(7104316-7104400)
chr1 (31-84)||(42819621-42819674)
chr1 (2-84)||(12144970-12145049)
chr1 (2-60)||(3367806-3367864)
chr1 (122-211)||(49897909-49897998)
chr1 (122-195)||(67982-68054)
chr1 (2-63)||(7749024-7749085)
chr1 (149-208)||(68139-68198)
chr1 (11-63)||(3231979-3232031)
chr1 (11-63)||(38839663-38839715)
chr1 (11-73)||(10775028-10775090)
[»] chr6 (10 HSPs)
chr6 (14-166)||(20068000-20068155)
chr6 (15-84)||(32342600-32342669)
chr6 (11-115)||(23577118-23577224)
chr6 (11-64)||(32047194-32047247)
chr6 (35-81)||(20206481-20206527)
chr6 (35-81)||(22100504-22100550)
chr6 (107-162)||(32047262-32047317)
chr6 (137-191)||(23577068-23577121)
chr6 (110-156)||(26236751-26236797)
chr6 (22-83)||(23577009-23577070)
[»] scaffold0136 (1 HSPs)
scaffold0136 (1-68)||(36965-37033)
[»] scaffold1743 (1 HSPs)
scaffold1743 (14-73)||(794-853)
[»] scaffold0047 (1 HSPs)
scaffold0047 (26-73)||(62744-62791)


Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-126; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 14 - 265
Target Start/End: Original strand, 32166640 - 32166890
Alignment:
Q  14 acatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaactatcgatgagcatacatttttccttgat 113  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  32166640 acatgttgaataaaggagatgaagaagtttgatgttcttgagatgaaaatgataattgatagtaagaaaaactatcgatgagcatacatttttctttgat 32166739  T
Q  114 gaattgggggtaatttacctctaatgacaagtacgattcgattttggaacgaaaagagatgtaaatcacatgttaaatgaagaagataagaagttcgaag 213  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||    
T  32166740 gaattgggtgtaatttacctctaatgacaagtacgattcgattttggaacg-aaagagatgtaaatcacatgttaaatgaagaagataagaaattcgaag 32166838  T
Q  214 aaacactttgattggaagcagctatgtaagaaaaaaccacattcatatattg 265  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32166839 aaacactttgattggaagcagctatgtaagaaaaaaccacattcatatattg 32166890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 14 - 202
Target Start/End: Complemental strand, 33897807 - 33897618
Alignment:
Q  14 acatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaa-gaaaaac-tatcgatgagcatacatttttccttg 111  Q
    ||||||||||| ||||| || ||||| ||||||||| || ||||||||||  ||||||||||||| ||||||  |||||| |||| ||||||||||||||    
T  33897807 acatgttgaatgaaggaaattaagaattttgatgtttttgagatgaaaatagtaattgatagtaaagaaaaatatatcgacgagcctacatttttccttg 33897708  T
Q  112 atgaattgggggtaatttacctctaatgacaagtacgattcgattttggaacgaaaagagatgtaaatcacatgttaaatgaagaagataa 202  Q
    || ||||| | ||||||||| ||| |||| ||  |||||| |||||| ||||||||| |||||||||||||||||||||||||| ||||||    
T  33897707 attaattgagagtaatttacatctgatgataaacacgattagattttagaacgaaaa-agatgtaaatcacatgttaaatgaaggagataa 33897618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 3 - 194
Target Start/End: Original strand, 35574634 - 35574827
Alignment:
Q  3 agatggacatcacatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaac--tatcgatgagca-ta 99  Q
    ||||||| || ||||||||||| || |||||||| || |||||||||||||||||||||||  ||| | || |||||||||||  |||| |||||   |     
T  35574634 agatggagatgacatgttgaatgaatgagatgaaaaaatttgatgttcttaagatgaaaatcgtaactaattgtaagaaaaaccctatcaatgaggtctc 35574733  T
Q  100 catttttccttgatgaattgggggtaatttacctctaatgacaagtacgattcgattttggaacgaaaagagatgtaaatcacatgttaaatgaa 194  Q
    |||| ||| ||||||||||| |||||||||||| |||||||||| || ||||||||||||||||| ||||||||  |||||| ||||| ||||||    
T  35574734 cattattcattgatgaattgagggtaatttaccgctaatgacaactatgattcgattttggaacg-aaagagattaaaatcatatgttcaatgaa 35574827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 2 - 64
Target Start/End: Complemental strand, 12736136 - 12736074
Alignment:
Q  2 gagatggacatcacatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatg 64  Q
    ||||||||||||||||||||||  |||||||||||||||||||||||| |||||||| |||||    
T  12736136 gagatggacatcacatgttgaacgaaggagatgaagaagtttgatgttattaagatggaaatg 12736074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 6630531 - 6630603
Alignment:
Q  1 tgagatggacatcacatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgat 73  Q
    ||||||||| ||||| |||| ||| |||||||||||||| ||| ||| |||||||||||||||| ||||||||    
T  6630531 tgagatggagatcacttgttaaatgaaggagatgaagaaatttaatgatcttaagatgaaaatggtaattgat 6630603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 107 - 195
Target Start/End: Complemental strand, 29969241 - 29969153
Alignment:
Q  107 ccttgatgaattgggggtaatttacctct-aatgacaagtacgattcgattttggaacgaaaagagatgtaaatcacatgttaaatgaag 195  Q
    ||||||||||||| || ||||||||| || |||||||||||  |||||||| ||||||| ||||||||| | |||||||||| |||||||    
T  29969241 ccttgatgaattgtggataatttaccccttaatgacaagtagaattcgattatggaacg-aaagagatgaatatcacatgttgaatgaag 29969153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 159
Target Start/End: Original strand, 6803876 - 6803926
Alignment:
Q  109 ttgatgaattgggggtaatttacctctaatgacaagtacgattcgattttg 159  Q
    ||||||||||||| |||||||||| ||||||||||||| |||| |||||||    
T  6803876 ttgatgaattgggagtaatttacccctaatgacaagtaggatttgattttg 6803926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 109 - 200
Target Start/End: Original strand, 6630316 - 6630406
Alignment:
Q  109 ttgatgaattgggggtaatttacctctaatgacaagtacgattcgattttggaacgaaaagagatgtaaatcacatgttaaatgaagaagat 200  Q
    ||||||||||| | |||||||||| ||||||||||||| |||| ||||||| || | || |||||| | | |||||||| |||||| |||||    
T  6630316 ttgatgaattgagagtaatttacccctaatgacaagtaggatttgattttgaaatg-aaggagatggataacacatgttgaatgaaaaagat 6630406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 81
Target Start/End: Original strand, 42054597 - 42054676
Alignment:
Q  2 gagatggacatcacatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaa 81  Q
    |||||||| ||||||| |||||| ||  |||| ||||| ||| ||||||| |||||||||||| || ||||| |||||||    
T  42054597 gagatggagatcacatattgaatgaaatagataaagaaattttatgttctgaagatgaaaatggtatttgattgtaagaa 42054676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 52
Target Start/End: Complemental strand, 29969179 - 29969129
Alignment:
Q  2 gagatggacatcacatgttgaataaaggagatgaagaagtttgatgttctt 52  Q
    |||||| | |||||||||||||| |||| || |||||||||||||||||||    
T  29969179 gagatgaatatcacatgttgaatgaaggggaagaagaagtttgatgttctt 29969129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 39
Target Start/End: Complemental strand, 29093618 - 29093581
Alignment:
Q  2 gagatggacatcacatgttgaataaaggagatgaagaa 39  Q
    |||||||| |||||||||||||| ||||||||||||||    
T  29093618 gagatggagatcacatgttgaatgaaggagatgaagaa 29093581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 63
Target Start/End: Complemental strand, 31475120 - 31475059
Alignment:
Q  2 gagatggacatcacatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaat 63  Q
    |||||| | |||||||  ||||| ||| ||||||||||||||||||||||| |||| |||||    
T  31475120 gagatgaaaatcacattgtgaatcaagaagatgaagaagtttgatgttcttgagataaaaat 31475059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 62
Target Start/End: Original strand, 6630375 - 6630435
Alignment:
Q  2 gagatggacatcacatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaa 62  Q
    |||||||| | |||||||||||| ||  ||||||| ||||||||||||||| |||| ||||    
T  6630375 gagatggataacacatgttgaatgaaaaagatgaaaaagtttgatgttcttgagataaaaa 6630435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 87; Significance: 1e-41; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 5 - 202
Target Start/End: Complemental strand, 34891612 - 34891414
Alignment:
Q  5 atggacatcacatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaa---ctatcgatgagcataca 101  Q
    ||||| |||||||||||||| |||||||||||||| |||||||||||| |||| |||||||||| | |||||||||||||    ||||| ||||| || |    
T  34891612 atggagatcacatgttgaatgaaggagatgaagaaatttgatgttcttgagatcaaaatgataactaatagtaagaaaaaaccatatcggtgagcctata 34891513  T
Q  102 tttttccttgatgaattgggggtaatttacctctaatgacaagtacgattcgattttggaacgaaaagagatgtaaatcacatgttaaatgaagaagata 201  Q
    || |||||||||||| | ||||||||||||| || ||||||| ||| ||||||||| |||| | |||||||| || ||||||||||||||||||||||||    
T  34891512 ttcttccttgatgaact-ggggtaatttacccctcatgacaaatacaattcgatttgggaatg-aaagagatctagatcacatgttaaatgaagaagata 34891415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 5 - 194
Target Start/End: Complemental strand, 42012879 - 42012690
Alignment:
Q  5 atggacatcacatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaac---tatcgatgagcataca 101  Q
    ||||| |||||||||||||||||  ||||||| |||||||||||||||  ||| ||| || ||| ||||  |||||||||    ||| ||||| | ||||    
T  42012879 atggagatcacatgttgaataaat-agatgaaaaagtttgatgttcttgtgataaaagtggtaactgattctaagaaaaaaccatattgatgaacttaca 42012781  T
Q  102 tttttccttgatgaattgggggtaatttacctctaatgacaagtacgattcgattttggaacgaaaagagatgtaaatcacatgttaaatgaa 194  Q
    |||||||||||| |||||||| ||||||| | || ||||||  || ||||||||||||||||||||| ||||||||||||||| |||||||||    
T  42012780 tttttccttgattaattgggg-taatttatccctcatgacatatatgattcgattttggaacgaaaa-agatgtaaatcacatcttaaatgaa 42012690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 11 - 202
Target Start/End: Original strand, 3191569 - 3191760
Alignment:
Q  11 atcacatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaaga-aaaactatcgatgagcatacatttttcct 109  Q
    ||||||||||||||||||||||||||||| ||||||||| || |||||||||  |||| ||||||||| | ||||  ||   ||||  ||||||||||||    
T  3191569 atcacatgttgaataaaggagatgaagaactttgatgtttttgagatgaaaagaataactgatagtaaaagaaaatcatatgtgagtctacatttttcct 3191668  T
Q  110 tgatgaattgggggtaatttacctctaatgacaagtacgattcgattttggaacgaaaagagatgtaaatcacatgttaaatgaagaagataa 202  Q
      ||| ||||| |||||||||||  | ||| ||| |||||||| |||||| || | |||| |||||||||||||| |||||||||| ||||||    
T  3191669 ccatgtattggcggtaatttacccttcatgtcaaatacgattcaattttgaaatg-aaagggatgtaaatcacatcttaaatgaaggagataa 3191760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 32 - 194
Target Start/End: Original strand, 31171316 - 31171480
Alignment:
Q  32 atgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaactatc--gatga-gcatacatttttccttgatgaattgggggtaatt 128  Q
    ||||||||| |||||||| |||||||||||||| |||||| | ||||||||||| |    ||||| |  |||||| |  |||||||||||||||||||||    
T  31171316 atgaagaagattgatgtttttaagatgaaaatggtaattggttgtaagaaaaaccaaaatgatgaagtctacattatcacttgatgaattgggggtaatt 31171415  T
Q  129 tacctctaatgacaagtacgattcgattttggaacgaaaagagatgtaaatcacatgttaaatgaa 194  Q
    ||||| |||| ||||||| ||||||||| || |||| ||||||||| ||||||||| || ||||||    
T  31171416 tacctataataacaagtaggattcgattatgaaacg-aaagagatggaaatcacattttgaatgaa 31171480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 3 - 84
Target Start/End: Original strand, 32138880 - 32138961
Alignment:
Q  3 agatggacatcacatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaa 84  Q
    ||||||| || ||||||||||  |||||||||||||| |||||||||||||||||||||||| ||||||||  |||||||||    
T  32138880 agatggagattacatgttgaacgaaggagatgaagaattttgatgttcttaagatgaaaatggtaattgattttaagaaaaa 32138961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 2 - 64
Target Start/End: Complemental strand, 23944158 - 23944096
Alignment:
Q  2 gagatggacatcacatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatg 64  Q
    |||||||| |||||||||||||| || |||| |||||||||||||||||||||||||||||||    
T  23944158 gagatggaaatcacatgttgaatgaaagagaagaagaagtttgatgttcttaagatgaaaatg 23944096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 194
Target Start/End: Original strand, 31152738 - 31152919
Alignment:
Q  16 atgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaact---atcgatga-gcatacatttttccttg 111  Q
    ||||||||| || || ||||||||| |||||||| |||||||||||||| |||||| | ||| ||||||     |  ||||| |  |||||| |  ||||    
T  31152738 atgttgaatgaaagaaatgaagaagattgatgtttttaagatgaaaatggtaattggttgtatgaaaaaaccaaaatgatgaagtctacattatcacttg 31152837  T
Q  112 atgaattgggggtaatttacctctaatgacaagtacgattcgattttggaacgaaaagagatgtaaatcacatgttaaatgaa 194  Q
    |||||||||||||||||||||| |||| ||||||| ||||||||| || |||| ||||||||| | ||||||| || ||||||    
T  31152838 atgaattgggggtaatttacctataataacaagtaggattcgattatgaaacg-aaagagatggagatcacattttgaatgaa 31152919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 73
Target Start/End: Original strand, 32962393 - 32962455
Alignment:
Q  11 atcacatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgat 73  Q
    |||| ||||||||||||||||||||| ||||||||| ||||||| ||||| ||||||||||||    
T  32962393 atcatatgttgaataaaggagatgaaaaagtttgattttcttaaaatgaatatgataattgat 32962455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 69
Target Start/End: Complemental strand, 34891438 - 34891380
Alignment:
Q  11 atcacatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataat 69  Q
    |||||||||| ||| ||| |||| |||||||||||||||||||| ||||||||||||||    
T  34891438 atcacatgttaaatgaagaagataaagaagtttgatgttcttaatatgaaaatgataat 34891380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 156
Target Start/End: Original strand, 22593565 - 22593722
Alignment:
Q  2 gagatggacatcacatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagt-aagaaaaa-----ctatcgatgag 95  Q
    ||||| || |||||||||||||| ||  ||||||||   |||||||||||| |||||||||||| ||||||| || ||||||||      ||||||||||    
T  22593565 gagatagatatcacatgttgaatgaaatagatgaag---tttgatgttcttgagatgaaaatgacaattgattgtaaagaaaaaaaatcttatcgatgag 22593661  T
Q  96 -catacatttttccttgatgaattgggggtaatttacctctaatgacaagtacgattcgatt 156  Q
     | ||||||   | || ||||||||| ||||||||||| |||||||||| ||||||||||||    
T  22593662 acctacattacccattaatgaattggaggtaatttacc-ctaatgacaattacgattcgatt 22593722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 64
Target Start/End: Original strand, 27651503 - 27651564
Alignment:
Q  2 gagatggacatcacatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatg 64  Q
    |||||||| |||||||||||||| ||||||||| ||  ||||||||||||| |||||||||||    
T  27651503 gagatggatatcacatgttgaatgaaggagatg-agttgtttgatgttcttgagatgaaaatg 27651564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 29 - 187
Target Start/End: Original strand, 8900670 - 8900831
Alignment:
Q  29 gagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaactatcgatg----agcatacatttttccttgatgaattgggggt 124  Q
    |||||||||||||||| ||||||| |||| |||||| ||||| || ||||||||||  |   |||    ||| |||||| | | |||||||||| |||||    
T  8900670 gagatgaagaagtttgttgttcttgagataaaaatggtaatttattgtaagaaaaaacaaaaatgttgaagcctacattatccattgatgaatt-ggggt 8900768  T
Q  125 aatttacctctaatgacaagtacgattcgattttggaacgaaaagagatgtaaatcacatgtt 187  Q
    |||||| | ||||| |||||||  |||||||| || ||| |||| | ||||| ||||||||||    
T  8900769 aatttatccctaataacaagtagaattcgattatgaaacaaaaaaaaatgtagatcacatgtt 8900831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 109 - 200
Target Start/End: Original strand, 33362347 - 33362436
Alignment:
Q  109 ttgatgaattgggggtaatttacctctaatgacaagtacgattcgattttggaacgaaaagagatgtaaatcacatgttaaatgaagaagat 200  Q
    ||||||| || ||||||| |||| |||||||  || || ||||||||||| |||| ||||||| ||||||||||||||| ||||||| ||||    
T  33362347 ttgatgagttaggggtaagttac-tctaatggtaaatatgattcgattttagaac-aaaagagttgtaaatcacatgttgaatgaaggagat 33362436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 62
Target Start/End: Original strand, 33362414 - 33362465
Alignment:
Q  11 atcacatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaa 62  Q
    |||||||||||||| |||||||| || |||||||||||||| || |||||||    
T  33362414 atcacatgttgaatgaaggagattaaaaagtttgatgttctgaaaatgaaaa 33362465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 68
Target Start/End: Complemental strand, 7463902 - 7463864
Alignment:
Q  30 agatgaagaagtttgatgttcttaagatgaaaatgataa 68  Q
    ||||||||||||||||||||||| | |||||||||||||    
T  7463902 agatgaagaagtttgatgttcttcaaatgaaaatgataa 7463864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 61
Target Start/End: Original strand, 8354394 - 8354444
Alignment:
Q  11 atcacatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaa 61  Q
    |||||||||||||| ||||| ||| |||||||| |||||||| ||||||||    
T  8354394 atcacatgttgaatgaaggatatgtagaagtttaatgttcttgagatgaaa 8354444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 48 - 84
Target Start/End: Original strand, 27651379 - 27651415
Alignment:
Q  48 ttcttaagatgaaaatgataattgatagtaagaaaaa 84  Q
    ||||| |||||||||||||||||||| ||||||||||    
T  27651379 ttcttgagatgaaaatgataattgattgtaagaaaaa 27651415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 84
Target Start/End: Original strand, 29152350 - 29152402
Alignment:
Q  32 atgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaa 84  Q
    |||||||||||||||||| || ||||||||||  ||| |||| ||||||||||    
T  29152350 atgaagaagtttgatgttattgagatgaaaatagtaactgattgtaagaaaaa 29152402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 80; Significance: 1e-37; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 11 - 195
Target Start/End: Original strand, 7113616 - 7113804
Alignment:
Q  11 atcacatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaa--ctat--cgatgagcatacattttt 106  Q
    |||||| ||||||| || ||||||||||||||| || ||||| |||||||||||||||||||| |||| |||||  ||||  ||| || | |||||||||    
T  7113616 atcacacgttgaatgaatgagatgaagaagtttaatattcttgagatgaaaatgataattgatggtaaaaaaaatactataccgacgaacctacattttt 7113715  T
Q  107 ccttgatgaattg-ggggtaatttacctctaatgacaagtacgattcgattttggaacgaaaagagatgtaaatcacatgttaaatgaag 195  Q
    ||||||||||||| ||||||||||||| || ||| ||| |||||||| ||| |||||| |||||||||||||||||||| ||||||||||    
T  7113716 ccttgatgaattgaggggtaatttaccgctgatgtcaaatacgattcaattatggaac-aaaagagatgtaaatcacatcttaaatgaag 7113804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 40483933 - 40483739
Alignment:
Q  1 tgagatggacatcacatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaa--ctatcgatgag-ca 97  Q
    ||||||||| |||||||||||| ||||| ||||||||||||| ||||||||| | || ||  ||  ||||||| ||| ||||||  ||||||||||| |     
T  40483933 tgagatggagatcacatgttgagtaaagaagatgaagaagttggatgttcttgatataaatttgggaattgattgtacgaaaaaacctatcgatgaggcc 40483834  T
Q  98 tacatttttccttgatgaattgggggtaatttacctctaatgacaagtacgattcgattttggaacgaaaagagatgtaaatcacatgttaaatga 193  Q
    ||  || |  |||||||||||| |||||| ||||| | ||||| ||||| ||||||||||||||||| || |||||| | |||||||||| |||||    
T  40483833 tatgttatctcttgatgaattgagggtaaattacccccaatgataagtatgattcgattttggaacg-aatgagatgaagatcacatgttgaatga 40483739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 2243310 - 2243388
Alignment:
Q  3 agatggacatcacatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaa 81  Q
    ||||||| |||||||||||||| ||||| ||||||||||||||||||||| ||||||||||| ||| | || |||||||    
T  2243310 agatggagatcacatgttgaatgaaggatatgaagaagtttgatgttcttgagatgaaaatggtaactaattgtaagaa 2243388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 973194 - 973111
Alignment:
Q  1 tgagatggacatcacatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaa 84  Q
    ||||||| | ||||||||||||||||||||||||||||| ||| ||||| || |||| |||||||||| | || ||||||||||    
T  973194 tgagatgaagatcacatgttgaataaaggagatgaagaaatttaatgtttttgagataaaaatgataactaattgtaagaaaaa 973111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 107 - 195
Target Start/End: Original strand, 2243249 - 2243335
Alignment:
Q  107 ccttgatgaattgggggtaatttacctctaatgacaagtacgattcgattttggaacgaaaagagatgtaaatcacatgttaaatgaag 195  Q
    |||||||||||||||| |||||||||||||||||||||||  |||||||| | ||||||| | ||||| | |||||||||| |||||||    
T  2243249 ccttgatgaattgggg-taatttacctctaatgacaagtaaaattcgattctagaacgaaga-agatggagatcacatgttgaatgaag 2243335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 81
Target Start/End: Complemental strand, 14138615 - 14138548
Alignment:
Q  14 acatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaa 81  Q
    ||||||||||| || |||||||  ||||||||| ||||||||||||||||| |||||||| |||||||    
T  14138615 acatgttgaatgaaagagatgagaaagtttgatattcttaagatgaaaatggtaattgattgtaagaa 14138548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 107 - 208
Target Start/End: Complemental strand, 17740009 - 17739908
Alignment:
Q  107 ccttgatgaattgggggtaatttacctctaatgacaagtacgattcgattttggaacgaaaagagatgtaaatcacatgttaaatgaagaagat-aagaa 205  Q
    ||||||||||||| | | |||| | | ||||| | ||||| ||||||||| |||||||||  |||||| ||||||||||||||||||||||||| |||||    
T  17740009 ccttgatgaattgagtgaaattcatccctaataataagtaggattcgattctggaacgaag-gagatgaaaatcacatgttaaatgaagaagatgaagaa 17739911  T
Q  206 gtt 208  Q
    |||    
T  17739910 gtt 17739908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 68
Target Start/End: Complemental strand, 972883 - 972845
Alignment:
Q  30 agatgaagaagtttgatgttcttaagatgaaaatgataa 68  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  972883 agatgaagaagtttgatgttcttgagatgaaaatgataa 972845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 84
Target Start/End: Original strand, 7215322 - 7215371
Alignment:
Q  35 aagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaa 84  Q
    |||||||||||||||||| ||||||||||| || ||||| ||||||||||    
T  7215322 aagaagtttgatgttcttgagatgaaaatggtagttgattgtaagaaaaa 7215371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 84
Target Start/End: Original strand, 17736756 - 17736829
Alignment:
Q  11 atcacatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaa 84  Q
    |||||||||||| | ||| |||||||||||||| || || || ||||||||||| |||||| | ||||||||||    
T  17736756 atcacatgttgagtgaagaagatgaagaagtttaatattattgagatgaaaatggtaattggttgtaagaaaaa 17736829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 68
Target Start/End: Original strand, 39808234 - 39808291
Alignment:
Q  11 atcacatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataa 68  Q
    |||| ||||| ||| ||||||||||| |||||||||| ||||||| ||||||||||||    
T  39808234 atcatatgttaaatgaaggagatgaaaaagtttgatggtcttaaggtgaaaatgataa 39808291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 208
Target Start/End: Original strand, 7215230 - 7215329
Alignment:
Q  108 cttgatgaattgggggtaatttacctctaatgacaagtacgattcgattttggaacgaaaagagatgtaaatcacatgttaaatgaagaagataagaagt 207  Q
    |||| |||||| |||||||||||||  |||||| || || ||||| ||||| ||| ||||| ||||| | ||||||| || ||||||||||| |||||||    
T  7215230 cttgttgaattcggggtaatttaccgttaatgataaatatgattcaattttagaatgaaaa-agatggagatcacatattcaatgaagaagaaaagaagt 7215328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 37077707 - 37077663
Alignment:
Q  29 gagatgaagaagtttgatgttcttaagatgaaaatgataattgat 73  Q
    ||||||||||||||| |||||||| ||||||||||||||| ||||    
T  37077707 gagatgaagaagtttaatgttcttgagatgaaaatgataactgat 37077663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 213
Target Start/End: Original strand, 39730369 - 39730484
Alignment:
Q  98 tacatttttccttgatgaattgggggtaatttacctctaatgacaagtacgattcgattttggaacgaaaagagatgtaaatcacatgttaaatgaagaa 197  Q
    |||||||||| |  ||||||||  ||||||||||| || ||||||  ||| |||||||||||||||| || |||||||| || |||| ||  |||||| |    
T  39730369 tacatttttcttgaatgaattgatggtaatttacccctcatgacatatacaattcgattttggaacg-aacgagatgtatattacatcttcgatgaagga 39730467  T
Q  198 gat-aagaagttcgaag 213  Q
    ||| |||||||||||||    
T  39730468 gataaagaagttcgaag 39730484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 5205532 - 5205578
Alignment:
Q  3 agatggacatcacatgttgaataaaggagatgaagaagtttgatgtt 49  Q
    ||||||| |||||||||| |||||||||||| || ||||||||||||    
T  5205532 agatggagatcacatgtttaataaaggagataaaaaagtttgatgtt 5205578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 63
Target Start/End: Original strand, 26105491 - 26105549
Alignment:
Q  5 atggacatcacatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaat 63  Q
    ||||| |||||||||  ||| ||||||||| ||||||||||||||||| |||| |||||    
T  26105491 atggagatcacatgtgaaatgaaggagatggagaagtttgatgttctttagataaaaat 26105549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 40483764 - 40483703
Alignment:
Q  1 tgagatggacatcacatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaat 63  Q
    ||||||| | |||||||||||||| |  ||||||||||||||||||||| || ||||||||||    
T  40483764 tgagatgaagatcacatgttgaatgagtgagatgaagaagtttgatgtt-tttagatgaaaat 40483703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 64
Target Start/End: Original strand, 22780346 - 22780399
Alignment:
Q  11 atcacatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatg 64  Q
    |||||||||||||| ||||| ||||||||||||  |||| || |||||||||||    
T  22780346 atcacatgttgaatgaaggatatgaagaagtttattgtttttgagatgaaaatg 22780399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 84
Target Start/End: Complemental strand, 37077833 - 37077760
Alignment:
Q  11 atcacatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaa 84  Q
    |||||||||||||| ||  | || ||||| ||||||||| || ||||||||||| ||| |||| ||||||||||    
T  37077833 atcacatgttgaatgaaaaaaattaagaaatttgatgtttttgagatgaaaatgctaactgattgtaagaaaaa 37077760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 64
Target Start/End: Original strand, 39730312 - 39730361
Alignment:
Q  15 catgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatg 64  Q
    |||||| ||| || |||||||| ||||||||||||||| |||||||||||    
T  39730312 catgttaaatgaaagagatgaaaaagtttgatgttcttgagatgaaaatg 39730361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 77; Significance: 9e-36; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 2 - 202
Target Start/End: Original strand, 13712743 - 13712945
Alignment:
Q  2 gagatggacatcacatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaac--tatcgatgagcata 99  Q
    |||||||| || | ||||||||||||| |||| |||||||||||||||||||||||| ||||| ||| ||||||||||||||||  ||||    ||| ||    
T  13712743 gagatggagattagatgttgaataaagaagataaagaagtttgatgttcttaagatggaaatggtaactgatagtaagaaaaaccttatcagcaagccta 13712842  T
Q  100 catttttcc-ttgatgaattgggggtaatttacctctaatgacaagtacgattcgattttggaacgaaaagagatgtaaatcacatgttaaatgaagaag 198  Q
    || |||||| |||||| |||| |||||||||| | |||||||||| ||| ||| | |||||||||  ||||||||||| |||||||||||||||||| ||    
T  13712843 caattttcctttgatgtattgagggtaatttatccctaatgacaaatacaattaggttttggaac-caaagagatgtagatcacatgttaaatgaaggag 13712941  T
Q  199 ataa 202  Q
    ||||    
T  13712942 ataa 13712945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 9050117 - 9050313
Alignment:
Q  1 tgagatggacatcacatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaact---atcgatgag-c 96  Q
    ||||||||| |||| ||||||||| | ||||||||||||||||| ||||||| | ||||||||| ||| |||| |||||||||| |   || || ||| |    
T  9050117 tgagatggagatcatatgttgaatgatggagatgaagaagtttgttgttcttcatatgaaaatggtaactgatcgtaagaaaaaattatattgacgagac 9050216  T
Q  97 atacatttttccttgatgaattgggggtaatttacctctaatgacaagtacgattcgattttggaacgaaaagagatgtaaatcacatgttaaatgaa 194  Q
      ||||| |  |||||||||||| ||||||||||||||||||||| |||| ||||||||| || ||| |||  |||||||||||| ||||||||||||    
T  9050217 caacattatctcttgatgaattgagggtaatttacctctaatgactagtaggattcgattatgaaac-aaagaagatgtaaatcaaatgttaaatgaa 9050313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 16576331 - 16576248
Alignment:
Q  1 tgagatggacatcacatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaa 84  Q
    ||||| ||| |||||||||||||| ||||||||||||||||||||||||||| ||| ||||||| |||||||| ||||||||||    
T  16576331 tgagaaggagatcacatgttgaatgaaggagatgaagaagtttgatgttcttgagaggaaaatggtaattgattgtaagaaaaa 16576248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 2 - 81
Target Start/End: Complemental strand, 16863538 - 16863459
Alignment:
Q  2 gagatggacatcacatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaa 81  Q
    |||||| | ||||||| |||||||||| |||||||||| |||||||||||| ||||||||||| ||| |||| |||||||    
T  16863538 gagatgtagatcacatattgaataaagaagatgaagaaatttgatgttcttgagatgaaaatggtaactgattgtaagaa 16863459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 32 - 194
Target Start/End: Original strand, 38576791 - 38576955
Alignment:
Q  32 atgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaac---tatcgatgag-catacatttttccttgatgaattgggggtaat 127  Q
    |||||||||||||||  | || ||||||||||| ||| |||| ||||||||||    |||||||||| | ||||||   |||| ||||||||||| ||||    
T  38576791 atgaagaagtttgattatattgagatgaaaatggtaactgattgtaagaaaaaaccttatcgatgaggcctacattacccctttatgaattgggg-taat 38576889  T
Q  128 ttacctctaatgacaagtacgattcgattttggaacgaaaagagatgtaaatcacatgttaaatgaa 194  Q
    ||||  |||||||||| || |||| |||| ||| |||||| |||||| |||||||||||| ||||||    
T  38576890 ttactcctaatgacaaatatgatttgattatggtacgaaa-gagatggaaatcacatgttgaatgaa 38576955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 38576930 - 38577001
Alignment:
Q  2 gagatggacatcacatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgat 73  Q
    |||||||| |||||||||||||| || ||||||||||| ||| |||||||| ||||||||||| ||| ||||    
T  38576930 gagatggaaatcacatgttgaatgaaagagatgaagaactttaatgttctttagatgaaaatggtaactgat 38577001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 105 - 162
Target Start/End: Original strand, 38576707 - 38576764
Alignment:
Q  105 ttccttgatgaattgggggtaatttacctctaatgacaagtacgattcgattttggaa 162  Q
    ||||||||||||| |  ||||||||||||| ||||||||||| |||||||||||||||    
T  38576707 ttccttgatgaatcgaaggtaatttacctcaaatgacaagtatgattcgattttggaa 38576764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 2909892 - 2909844
Alignment:
Q  14 acatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaa 62  Q
    ||||||||||| |||||||||||||||||||||||| |||| |||||||    
T  2909892 acatgttgaatgaaggagatgaagaagtttgatgtttttaaaatgaaaa 2909844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 15 - 208
Target Start/End: Complemental strand, 16576486 - 16576290
Alignment:
Q  15 catgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaa---ctat-cgatgagcatacatttttcctt 110  Q
    |||||| ||| ||||| ||||||| ||||| |||| || | ||||||||||||| |||| ||||||||||   |||| ||  | || ||| ||   ||||    
T  16576486 catgttaaatgaaggatatgaagatgtttgttgtttttgaaatgaaaatgataaatgattgtaagaaaaaactctatccgtggggcctacgttacccctt 16576387  T
Q  111 gatgaattgggggtaatttacctctaatgacaagtacgattcgattttggaacgaaaagagatgtaaatcacatgttaaatgaagaagat-aagaagtt 208  Q
    |||||||| ||| ||||||||| ||||||| ||||| ||||||||| ||||||| || |||| | | |||||||||| ||||||| |||| ||||||||    
T  16576386 gatgaatt-gggttaatttacccctaatgataagtatgattcgattctggaacg-aatgagaaggagatcacatgttgaatgaaggagatgaagaagtt 16576290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 124 - 194
Target Start/End: Complemental strand, 9931406 - 9931337
Alignment:
Q  124 taatttacctctaatgacaagtacgattcgattttggaacgaaaagagatgtaaatcacatgttaaatgaa 194  Q
    ||||||||| |  ||||||| ||||||||||||||||||| |||||||||| | ||||||||| |||||||    
T  9931406 taatttaccccacatgacaaatacgattcgattttggaac-aaaagagatgaatatcacatgtaaaatgaa 9931337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 17606620 - 17606665
Alignment:
Q  1 tgagatggacatcacatgttgaataaaggagatgaagaagtttgat 46  Q
    ||||||||| |||||||||||||| ||||||||||| |||||||||    
T  17606620 tgagatggatatcacatgttgaatgaaggagatgaacaagtttgat 17606665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 194
Target Start/End: Complemental strand, 25606506 - 25606423
Alignment:
Q  110 tgatgaattgggggtaatttacctctaatgacaagtacgattcgattttggaacgaaaagagatgtaaatcacatgttaaatgaa 194  Q
    |||||||||| ||||||||||||  |||| ||||||| |||||| || ||||||| || |||||||| |||| ||||| ||||||    
T  25606506 tgatgaattgagggtaatttacccttaataacaagtaggattcgtttatggaacg-aaggagatgtatatcatatgttgaatgaa 25606423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 28282733 - 28282653
Alignment:
Q  1 tgagatggacatcacatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaa 81  Q
    ||||||||| ||||||| |||||| ||| |||| ||||||||||||||| |  ||||||||||| || | ||| |||||||    
T  28282733 tgagatggagatcacatattgaatgaagcagataaagaagtttgatgttatggagatgaaaatggtattcgattgtaagaa 28282653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 30 - 73
Target Start/End: Complemental strand, 34176697 - 34176654
Alignment:
Q  30 agatgaagaagtttgatgttcttaagatgaaaatgataattgat 73  Q
    ||||||||||||||||| ||||||||||||||||| ||| ||||    
T  34176697 agatgaagaagtttgatattcttaagatgaaaatggtaactgat 34176654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 35370481 - 35370402
Alignment:
Q  1 tgagatggacatcacatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaaga 80  Q
    ||||||||  || ||||||||||| ||||||| ||||||||||| | ||||| |||| |||||| ||| |||| ||||||    
T  35370481 tgagatgggtattacatgttgaatgaaggagacgaagaagtttggtattcttgagattaaaatggtaactgattgtaaga 35370402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 84
Target Start/End: Complemental strand, 25606448 - 25606366
Alignment:
Q  2 gagatggacatcacatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaa 84  Q
    |||||| | |||| ||||||||| ||  |||||||||| |||||||||||  || ||||||||||| ||||  ||||||||||    
T  25606448 gagatgtatatcatatgttgaatgaaacagatgaagaattttgatgttctggagttgaaaatgatatttgagtgtaagaaaaa 25606366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 84
Target Start/End: Complemental strand, 35371193 - 35371111
Alignment:
Q  2 gagatggacatcacatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaa 84  Q
    |||||||| |||||||||| ||| ||||  |  |||||||||||||||||| | ||||||||| ||| |||| |||| |||||    
T  35371193 gagatggaaatcacatgttaaatgaaggtaacaaagaagtttgatgttcttgatatgaaaatggtaaatgattgtaaaaaaaa 35371111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 202
Target Start/End: Complemental strand, 28282791 - 28282699
Alignment:
Q  109 ttgatgaattgggggtaatttacctctaatgacaagtacgattcgattttggaacgaaaagagatgtaaatcacatgttaaatgaagaagataa 202  Q
    |||||||||||  ||||||||||| ||||| |||||||  ||| |||| ||||||| || |||||| | ||||||| || ||||||| ||||||    
T  28282791 ttgatgaattgacggtaatttacccctaataacaagtaaaatttgattatggaacg-aatgagatggagatcacatattgaatgaagcagataa 28282699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 64
Target Start/End: Original strand, 2248931 - 2248991
Alignment:
Q  4 gatggacatcacatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatg 64  Q
    |||||| | |||||||| ||| ||| |||||||||||||| ||||| || |||||||||||    
T  2248931 gatggagaccacatgttcaattaagaagatgaagaagtttaatgtttttgagatgaaaatg 2248991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 84
Target Start/End: Complemental strand, 28282876 - 28282824
Alignment:
Q  32 atgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaa 84  Q
    ||||| ||||||||| || |  |||||||||||||||||||| ||||||||||    
T  28282876 atgaaaaagtttgatattatggagatgaaaatgataattgattgtaagaaaaa 28282824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 63
Target Start/End: Complemental strand, 35373780 - 35373728
Alignment:
Q  11 atcacatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaat 63  Q
    |||||||||||||| ||||  | |||||||||||| |||||| ||||||||||    
T  35373780 atcacatgttgaatgaaggtaaagaagaagtttgacgttcttgagatgaaaat 35373728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 5e-34; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 26 - 202
Target Start/End: Original strand, 25234217 - 25234393
Alignment:
Q  26 aaggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaac-tatcgatgagcatacatttttccttgatgaattgggggt 124  Q
    ||||| || ||||| |||||||||||| ||||||||||| ||| ||||  |||||||| | |||| |||||| |||||||||||||||||||||  ||||    
T  25234217 aaggatattaagaaatttgatgttcttgagatgaaaatggtaactgatgctaagaaaaccatatcaatgagcctacatttttccttgatgaattacgggt 25234316  T
Q  125 aatttacctctaatgacaagtacgattcgattttggaacgaaaagagatgtaaatcacatgttaaatgaagaagataa 202  Q
    |||||||| || ||||||| ||||||||||||||||||||  ||||| | |||||||||  |||||||||| ||||||    
T  25234317 aatttaccgctcatgacaaatacgattcgattttggaacg-taagaggtataaatcacaccttaaatgaaggagataa 25234393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 30 - 208
Target Start/End: Complemental strand, 25062544 - 25062361
Alignment:
Q  30 agatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaact----atcgatga-gcatacatttttccttgatgaattgggggt 124  Q
    ||||||||||||||||| ||||| ||||||||| | |||||||| ||||||||||      || | ||| || |||||| ||||||||||||||| ||||    
T  25062544 agatgaagaagtttgatattcttgagatgaaaacggtaattgattgtaagaaaaaaaccaaattggtgaagcctacattattccttgatgaattgagggt 25062445  T
Q  125 aatttacctctaatgacaagtacgattcgattttggaacgaaaagagatgtaaatcacatgttaaatgaagaagat-aagaagtt 208  Q
    |||||||| ||||| ||||||| |||| |||| |||||| ||| |||||| | |||||||||| ||||||| |||| ||||||||    
T  25062444 aatttacccctaataacaagtaggatttgattatggaac-aaaggagatgaagatcacatgtttaatgaagcagatgaagaagtt 25062361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 11 - 129
Target Start/End: Original strand, 15131577 - 15131698
Alignment:
Q  11 atcacatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaa---ctatcgatgagcatacatttttc 107  Q
    |||||||| ||||| |||||||||||||| |||||||||||| |||| |||||| ||| |||||||||||||||    ||||||||||| ||||||  |     
T  15131577 atcacatgctgaatgaaggagatgaagaaatttgatgttcttgagataaaaatggtaactgatagtaagaaaaaaccatatcgatgagcctacattaatt 15131676  T
Q  108 cttgatgaattgggggtaattt 129  Q
    |||||||||||  |||||||||    
T  15131677 cttgatgaattaagggtaattt 15131698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 5 - 158
Target Start/End: Original strand, 54000043 - 54000199
Alignment:
Q  5 atggacatcacatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaa---ctatcgatgagcataca 101  Q
    ||||| ||||||||||||||||| | ||||||    |||||||||||| ||||||||||| |||||||||||||||||||    |||||||||   ||||    
T  54000043 atggagatcacatgttgaataaatgtgatgaatttttttgatgttcttgagatgaaaatggtaattgatagtaagaaaaaaccatatcgatgaatctaca 54000142  T
Q  102 tttttccttgatgaattgggggtaatttacctctaatgacaagtacgattcgatttt 158  Q
    |||||  || ||||| || | |||||||||   | ||||||| ||||||||||||||    
T  54000143 ttttttttttatgaactgagtgtaatttactcgtcatgacaaatacgattcgatttt 54000199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 5 - 73
Target Start/End: Original strand, 20512823 - 20512891
Alignment:
Q  5 atggacatcacatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgat 73  Q
    ||||| || ||||||| ||| ||| ||||||||||||||||||||  |||||||||||||| |||||||    
T  20512823 atggagattacatgttaaatgaagaagatgaagaagtttgatgtttataagatgaaaatgacaattgat 20512891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 22050935 - 22050851
Alignment:
Q  1 tgagatggacatcacatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaac 85  Q
    ||||||| | |||||||||||||| ||||||||||||||  ||  |||| ||||||| |||||||||| | || |||||||||||    
T  22050935 tgagatgaagatcacatgttgaatgaaggagatgaagaaacttattgtttttaagataaaaatgataactaattgtaagaaaaac 22050851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 78
Target Start/End: Original strand, 4115389 - 4115452
Alignment:
Q  15 catgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaa 78  Q
    |||||||||| || |||||| |||||||| ||||||||||||| |||||| ||||| |||||||    
T  4115389 catgttgaatgaatgagatggagaagtttcatgttcttaagataaaaatggtaattaatagtaa 4115452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 63
Target Start/End: Complemental strand, 25062401 - 25062340
Alignment:
Q  2 gagatggacatcacatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaat 63  Q
    |||||| | |||||||||| ||| ||| |||||||||||||||||||||| ||||| |||||    
T  25062401 gagatgaagatcacatgtttaatgaagcagatgaagaagtttgatgttctgaagataaaaat 25062340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 68
Target Start/End: Original strand, 54000218 - 54000275
Alignment:
Q  11 atcacatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataa 68  Q
    ||||||| || ||| |||||||| ||||||||||||||| ||||||| ||||||||||    
T  54000218 atcacatcttaaatgaaggagataaagaagtttgatgtttttaagataaaaatgataa 54000275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 109 - 202
Target Start/End: Complemental strand, 55897693 - 55897600
Alignment:
Q  109 ttgatgaattgggggtaatttacctctaatgacaagtacgattcgattttggaacgaaaagagatgtaaatcacatgttaaatgaagaagataa 202  Q
    ||||||||||| || || ||||||  |||| |||||||  |||  ||||||||||||||||||||| | |||| ||||| |||||| |||||||    
T  55897693 ttgatgaattgaggatagtttacccttaataacaagtagaatttaattttggaacgaaaagagatgaagatcatatgttgaatgaataagataa 55897600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 11020074 - 11020144
Alignment:
Q  2 gagatggacatcacatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgat 73  Q
    |||||| | |||||||||| |||||||||||| || | ||||||| || |||||||||||||||||| ||||    
T  11020074 gagatgcaaatcacatgttaaataaaggagataaa-aggtttgatatttttaagatgaaaatgataactgat 11020144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 200
Target Start/End: Complemental strand, 22050995 - 22050903
Alignment:
Q  107 ccttgatgaattgggggtaatttacctctaatgacaagtacgattcgattttggaacgaaaagagatgtaaatcacatgttaaatgaagaagat 200  Q
    |||| |||||||||||||||||||||  |||||| || || ||||||||| | ||| | || |||||| | |||||||||| ||||||| ||||    
T  22050995 cctttatgaattgggggtaatttacccttaatgataaatatgattcgattct-gaaaggaatgagatgaagatcacatgttgaatgaaggagat 22050903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 62
Target Start/End: Complemental strand, 22050775 - 22050719
Alignment:
Q  6 tggacatcacatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaa 62  Q
    |||| |||||||||| ||| ||||| |||||||||||||||||| || |||| ||||    
T  22050775 tggagatcacatgttaaatgaaggaaatgaagaagtttgatgttgttgagattaaaa 22050719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 5 - 170
Target Start/End: Complemental strand, 39341278 - 39341110
Alignment:
Q  5 atggacatcacatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaa---ctatcgatgagcataca 101  Q
    ||||| ||| |||||||||| ||||||||||| ||||||||| ||||||||||||||||| ||| | |||||||||||||    ||||| |||||||| |    
T  39341278 atggagatctcatgttgaatgaaggagatgaaaaagtttgatattcttaagatgaaaatggtaactcatagtaagaaaaaattatatcggtgagcatata 39341179  T
Q  102 tttttccttgatgaattgggggtaatttacctctaatgacaagtacgattcgattttggaacgaaaaga 170  Q
    |||||||||||| ||||| || ||||||||| || | || || || ||||||| ||| ||||| |||||    
T  39341178 tttttccttgattaattgaggataatttacccctcacgataaatatgattcgactttagaacgtaaaga 39341110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 11 - 167
Target Start/End: Original strand, 42091793 - 42091951
Alignment:
Q  11 atcacatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaa-gaaaaactatcgatgag-catacatttttcc 108  Q
    |||||||||| ||| || |||||||| |||||||||||| || ||||||||||||||||| || |||| ||||||  || | |||| |||||| |   ||    
T  42091793 atcacatgttaaatgaaagagatgaaaaagtttgatgtttttgagatgaaaatgataattaattgtaaggaaaaagcattggtgagacatacaatacccc 42091892  T
Q  109 ttgatgaattgggggtaatttacctctaatgacaagtacgattcgattttggaacgaaa 167  Q
    |||| ||||||||||||||||||| ||||| ||||||| || | |||| ||||||||||    
T  42091893 ttgacgaattgggggtaatttacccctaatcacaagtaagacttgattatggaacgaaa 42091951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 5 - 83
Target Start/End: Complemental strand, 46303449 - 46303371
Alignment:
Q  5 atggacatcacatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaa 83  Q
    ||||| |||||||||||||||||| |||||||||||||||||| |||  |||| ||||||||| ||||| |||||||||    
T  46303449 atggagatcacatgttgaataaagaagatgaagaagtttgatgctctatagataaaaatgatatttgattgtaagaaaa 46303371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 34761945 - 34762028
Alignment:
Q  1 tgagatggacatcacatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaa 84  Q
    ||||||| | |||||||||||| | |||||||| || | ||||||| ||||  |||||||||||||||||||| | ||||||||    
T  34761945 tgagatgaagatcacatgttgagtgaaggagataaaaaggtttgatattctcgagatgaaaatgataattgattgaaagaaaaa 34762028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 64
Target Start/End: Original strand, 20519289 - 20519351
Alignment:
Q  2 gagatggacatcacatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatg 64  Q
    |||||||| |||||||||| ||| || ||||||||||| ||||| |||||| |||||||||||    
T  20519289 gagatggagatcacatgtttaatgaaagagatgaagaaatttgacgttcttgagatgaaaatg 20519351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 107 - 208
Target Start/End: Complemental strand, 54437949 - 54437848
Alignment:
Q  107 ccttgatgaattgggggtaatttacctctaatgacaagtacgattcgattttggaacgaaaagagatgtaaatcacatgttaaatgaagaagat-aagaa 205  Q
    ||||| |||||| ||||||||||||||||||||| || || |||| ||||||  || ||||| ||||| ||| ||| |||||||||| |||||| |||||    
T  54437949 ccttgttgaattaggggtaatttacctctaatgataaatatgatttgattttaaaatgaaaa-agatggaaaccacgtgttaaatgaggaagatgaagaa 54437851  T
Q  206 gtt 208  Q
    |||    
T  54437850 gtt 54437848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 85
Target Start/End: Complemental strand, 31758298 - 31758242
Alignment:
Q  28 ggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaac 85  Q
    |||||| |||||||||||| || |||||||||||||| |||||||| |||||||||||    
T  31758298 ggagattaagaagtttgatatt-ttaagatgaaaatggtaattgattgtaagaaaaac 31758242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 109 - 166
Target Start/End: Complemental strand, 39341340 - 39341283
Alignment:
Q  109 ttgatgaattgggggtaatttacctctaatgacaagtacgattcgattttggaacgaa 166  Q
    |||||||||| ||||||||||||||||||||| || || ||||| ||||| |||||||    
T  39341340 ttgatgaattaggggtaatttacctctaatgataaataagattcaattttagaacgaa 39341283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 84
Target Start/End: Complemental strand, 54437860 - 54437806
Alignment:
Q  30 agatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaa 84  Q
    |||||||||||||||||||| || |||| |||||| ||| |||| ||||||||||    
T  54437860 agatgaagaagtttgatgtttttgagattaaaatggtaactgattgtaagaaaaa 54437806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 73
Target Start/End: Complemental strand, 48646479 - 48646423
Alignment:
Q  16 atgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgat 73  Q
    ||||||||| ||| | ||||| ||||||||||||||||||||||||||| | ||||||    
T  48646479 atgttgaatgaagaatatgaa-aagtttgatgttcttaagatgaaaatggtcattgat 48646423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 70
Target Start/End: Complemental strand, 54437707 - 54437651
Alignment:
Q  14 acatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataatt 70  Q
    ||||||| ||| ||||| |||||||||||| ||||| || ||||||||||| |||||    
T  54437707 acatgttaaatgaaggatatgaagaagtttaatgttattgagatgaaaatggtaatt 54437651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 3 - 84
Target Start/End: Original strand, 34601435 - 34601516
Alignment:
Q  3 agatggacatcacatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaa 84  Q
    ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||| |  |||||||| ||| ||||||    
T  34601435 agatggaaatcacatgttgaataaaggagatgaggaagtttgatgttcttaagataaaagttgtaattgattgtaggaaaaa 34601516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 14 - 84
Target Start/End: Complemental strand, 46081041 - 46080971
Alignment:
Q  14 acatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaa 84  Q
    ||||||||| | |||||||||||||||||| |||||||| ||||||||||| |||||||| ||||||||||    
T  46081041 acatgttgagtgaaggagatgaagaagtttaatgttcttgagatgaaaatggtaattgattgtaagaaaaa 46080971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 10775231 - 10775163
Alignment:
Q  16 atgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaa 84  Q
    ||||||||  || |||||||||||||||||||||||||||||||||||| ||||||||  |||||||||    
T  10775231 atgttgaacgaaagagatgaagaagtttgatgttcttaagatgaaaatggtaattgattctaagaaaaa 10775163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 5 - 131
Target Start/End: Original strand, 7997185 - 7997314
Alignment:
Q  5 atggacatcacatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaa---ctatcgatgagcataca 101  Q
    ||||| || ||||||||||| || || ||||||||||| ||| || |  ||||||||||| ||||||||| |||||||||    |||||||||   ||||    
T  7997185 atggatatgacatgttgaatgaaagaaatgaagaagttagatattatagagatgaaaatggtaattgatactaagaaaaaatcatatcgatgaatctaca 7997284  T
Q  102 tttttccttgatgaattgggggtaatttac 131  Q
    ||||| ||||||||||| ||||||||||||    
T  7997285 ttttttcttgatgaatttggggtaatttac 7997314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 73
Target Start/End: Complemental strand, 52432742 - 52432672
Alignment:
Q  3 agatggacatcacatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgat 73  Q
    ||||||| ||||| |||| ||| |||||||||||||||||| |||||||| ||||||||||| ||||||||    
T  52432742 agatggagatcacttgttaaatgaaggagatgaagaagtttaatgttcttgagatgaaaatggtaattgat 52432672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 84
Target Start/End: Complemental strand, 24873839 - 24873765
Alignment:
Q  11 atcacatgttgaataaaggagatg-aagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaa 84  Q
    |||||||||||||| | ||||||| || ||||||||| ||||||| ||||||||| |||||||| ||||||||||    
T  24873839 atcacatgttgaattatggagatgaaaaaagtttgatcttcttaaaatgaaaatggtaattgattgtaagaaaaa 24873765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 84
Target Start/End: Complemental strand, 24874672 - 24874598
Alignment:
Q  11 atcacatgttgaataaaggagatg-aagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaa 84  Q
    |||||||||||||| | ||||||| || ||||||||| ||||||| ||||||||| |||||||| ||||||||||    
T  24874672 atcacatgttgaattatggagatgaaaaaagtttgatcttcttaaaatgaaaatggtaattgattgtaagaaaaa 24874598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 32 - 121
Target Start/End: Original strand, 44342055 - 44342145
Alignment:
Q  32 atgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaac---tatcgatgagcatacatttttccttgatgaattggg 121  Q
    |||||||||||||||||| || | ||||||||| |||| ||||||||||||||    ||||| ||||| ||||||||||||||||||||||||    
T  44342055 atgaagaagtttgatgtt-ttgatatgaaaatggtaat-gatagtaagaaaaaactatatcggtgagcctacatttttccttgatgaattggg 44342145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 84
Target Start/End: Complemental strand, 49897952 - 49897870
Alignment:
Q  2 gagatggacatcacatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaa 84  Q
    |||||||| |||||||||||||| ||||||| ||||||||| || |||||| || | |||||| ||||| || ||||||||||    
T  49897952 gagatggagatcacatgttgaatgaaggagaagaagaagttcgacgttcttgagctaaaaatggtaattaatcgtaagaaaaa 49897870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 84
Target Start/End: Complemental strand, 68178 - 68097
Alignment:
Q  3 agatggacatcacatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaa 84  Q
    ||||||| |||||||||| ||| ||||||||||||||||| ||||||||| | || |||||| ||| | || ||||||||||    
T  68178 agatggagatcacatgttaaatgaaggagatgaagaagttagatgttcttgaaataaaaatggtaactcattgtaagaaaaa 68097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 107 - 200
Target Start/End: Complemental strand, 3232271 - 3232179
Alignment:
Q  107 ccttgatgaattgggggtaatttacctctaatgacaagtacgattcgattttggaacgaaaagagatgtaaatcacatgttaaatgaagaagat 200  Q
    |||||||||||| |||| |||||||||||||||| ||||| ||||||||  | ||| | ||||||||| | || ||||||| ||||||||||||    
T  3232271 ccttgatgaattaggggcaatttacctctaatgataagtatgattcgatactagaa-gtaaagagatggagattacatgttgaatgaagaagat 3232179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 115 - 200
Target Start/End: Complemental strand, 7104400 - 7104316
Alignment:
Q  115 aattgggggtaatttacctctaatgacaagtacgattcgattttggaacgaaaagagatgtaaatcacatgttaaatgaagaagat 200  Q
    |||||||||||| |||| |||||||||||||| ||||||||| || |||| ||||||||| | || ||||||| ||||||| ||||    
T  7104400 aattgggggtaaattacttctaatgacaagtatgattcgattctgaaacg-aaagagatgaatattacatgttgaatgaaggagat 7104316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 84
Target Start/End: Complemental strand, 42819674 - 42819621
Alignment:
Q  31 gatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaa 84  Q
    |||||| |||||| |||||||| |||||||||||||||||||| ||||||||||    
T  42819674 gatgaataagttttatgttcttgagatgaaaatgataattgattgtaagaaaaa 42819621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 2 - 84
Target Start/End: Complemental strand, 12145049 - 12144970
Alignment:
Q  2 gagatggacatcacatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaa 84  Q
    |||||| | |||||||||||||| || |||||||||||||||||   | || |||| ||||||||||||||| ||||||||||    
T  12145049 gagatgaaaatcacatgttgaatgaatgagatgaagaagtttga---tattgagataaaaatgataattgattgtaagaaaaa 12144970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 60
Target Start/End: Complemental strand, 3367864 - 3367806
Alignment:
Q  2 gagatggacatcacatgttgaataaaggagatgaagaagtttgatgttcttaagatgaa 60  Q
    |||||||| |||||||||||||| || |||||||| || |||||||||||| |||||||    
T  3367864 gagatggagatcacatgttgaatgaatgagatgaaaaaatttgatgttcttgagatgaa 3367806  T

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Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 122 - 211
Target Start/End: Complemental strand, 49897998 - 49897909
Alignment:
Q  122 ggtaatttacctctaatgacaagtacgattcgattttggaacgaaaagagatgtaaatcacatgttaaatgaagaag-ataagaagttcga 211  Q
    |||||||||||||||||||||| || ||||||||| | |||| ||| |||||| | |||||||||| ||||||| || | |||||||||||    
T  49897998 ggtaatttacctctaatgacaattatgattcgattctagaac-aaaggagatggagatcacatgttgaatgaaggagaagaagaagttcga 49897909  T

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Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 122 - 195
Target Start/End: Complemental strand, 68054 - 67982
Alignment:
Q  122 ggtaatttacctctaatgacaagtacgattcgattttggaacgaaaagagatgtaaatcacatgttaaatgaag 195  Q
    |||||||||||||||||||||| || ||| ||||||||||| | ||||||||| | |||||||||  |||||||    
T  68054 ggtaatttacctctaatgacaattatgatccgattttggaatg-aaagagatgaagatcacatgtagaatgaag 67982  T

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Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 63
Target Start/End: Complemental strand, 7749085 - 7749024
Alignment:
Q  2 gagatggacatcacatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaat 63  Q
    |||||||| |||||||||| || |||| | |||||||| |||||||||||| ||||||||||    
T  7749085 gagatggagatcacatgttaaacaaagaaaatgaagaaatttgatgttcttgagatgaaaat 7749024  T

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Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 208
Target Start/End: Complemental strand, 68198 - 68139
Alignment:
Q  149 attcgattttggaacgaaaagagatgtaaatcacatgttaaatgaagaagat-aagaagtt 208  Q
    |||||||||||||||||||| ||||| | |||||||||||||||||| |||| ||||||||    
T  68198 attcgattttggaacgaaaa-agatggagatcacatgttaaatgaaggagatgaagaagtt 68139  T

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Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 63
Target Start/End: Complemental strand, 3232031 - 3231979
Alignment:
Q  11 atcacatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaat 63  Q
    |||||||||||||| || || ||||||||||||| ||||||| ||||||||||    
T  3232031 atcacatgttgaatgaatgacatgaagaagtttgttgttcttgagatgaaaat 3231979  T

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Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 63
Target Start/End: Original strand, 38839663 - 38839715
Alignment:
Q  11 atcacatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaat 63  Q
    ||||||||| |||| ||| ||||||||| ||||||||||||| ||||||||||    
T  38839663 atcacatgtcgaatgaagaagatgaagaggtttgatgttcttgagatgaaaat 38839715  T

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Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 73
Target Start/End: Complemental strand, 10775090 - 10775028
Alignment:
Q  11 atcacatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgat 73  Q
    |||||||||||||| ||  ||| |||||| |||||||||||  |||||||||||||| |||||    
T  10775090 atcacatgttgaatgaaacagacgaagaaatttgatgttctggagatgaaaatgatatttgat 10775028  T

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Target: chr6 (Bit Score: 47; Significance: 7e-18; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 14 - 166
Target Start/End: Complemental strand, 20068155 - 20068000
Alignment:
Q  14 acatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaa---ctatcgatgag-catacatttttcct 109  Q
    ||||||||||| || ||||||| |||||||||||||||  | ||||||||| || | ||| ||||||||||   |||| |||||| | |||||||| | |    
T  20068155 acatgttgaatgaaagagatgaggaagtttgatgttctctacatgaaaatggtact-gattgtaagaaaaagcactatggatgaggcttacattttcctt 20068057  T
Q  110 tgatgaattgggggtaatttacctctaatgacaagtacgattcgattttggaacgaa 166  Q
    ||||||||||  |||||||||||  ||| |||||||| ||||||||| |||||||||    
T  20068056 tgatgaattgaaggtaatttacccttaaagacaagtaggattcgattatggaacgaa 20068000  T

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Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 15 - 84
Target Start/End: Complemental strand, 32342669 - 32342600
Alignment:
Q  15 catgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaa 84  Q
    |||||||||| || |||||||| |||||||||||| || |||||||||||||||||||| ||||||||||    
T  32342669 catgttgaatgaatgagatgaaaaagtttgatgtttttgagatgaaaatgataattgattgtaagaaaaa 32342600  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 115
Target Start/End: Complemental strand, 23577224 - 23577118
Alignment:
Q  11 atcacatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaaac--tatcgatgagcatacatttttcc 108  Q
    |||| ||||||||| ||||||||| |||||| ||||||| || ||||||||||| ||| || || ||||||||||  ||||  ||||| |||||||||||    
T  23577224 atcagatgttgaatgaaggagatggagaagtatgatgtttttgagatgaaaatggtaactgttactaagaaaaaccatatcattgagcctacatttttcc 23577125  T
Q  109 ttgatga 115  Q
    || ||||    
T  23577124 ttcatga 23577118  T

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Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 64
Target Start/End: Complemental strand, 32047247 - 32047194
Alignment:
Q  11 atcacatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatg 64  Q
    |||| ||||||||| || |||||||||||||||||||||||| |||||||||||    
T  32047247 atcatatgttgaatgaatgagatgaagaagtttgatgttcttgagatgaaaatg 32047194  T

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Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 35 - 81
Target Start/End: Original strand, 20206481 - 20206527
Alignment:
Q  35 aagaagtttgatgttcttaagatgaaaatgataattgatagtaagaa 81  Q
    ||||||||||||||| || |||||||||||||||||||| |||||||    
T  20206481 aagaagtttgatgttattgagatgaaaatgataattgattgtaagaa 20206527  T

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Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 35 - 81
Target Start/End: Original strand, 22100504 - 22100550
Alignment:
Q  35 aagaagtttgatgttcttaagatgaaaatgataattgatagtaagaa 81  Q
    ||||||||||||||| || |||||||||||||||||||| |||||||    
T  22100504 aagaagtttgatgttattgagatgaaaatgataattgattgtaagaa 22100550  T

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Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 107 - 162
Target Start/End: Complemental strand, 32047317 - 32047262
Alignment:
Q  107 ccttgatgaattgggggtaatttacctctaatgacaagtacgattcgattttggaa 162  Q
    ||||||||||||| || ||||||||||||||||| ||||| ||||| ||| |||||    
T  32047317 ccttgatgaattgaggataatttacctctaatgataagtaggattcaattatggaa 32047262  T

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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 191
Target Start/End: Complemental strand, 23577121 - 23577068
Alignment:
Q  137 atgacaagtacgattcgattttggaacgaaaagagatgtaaatcacatgttaaat 191  Q
    ||||||| ||||||||||||||||||  ||||||||||||||| |||| ||||||    
T  23577121 atgacaaatacgattcgattttggaa-taaaagagatgtaaataacatcttaaat 23577068  T

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Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 156
Target Start/End: Original strand, 26236751 - 26236797
Alignment:
Q  110 tgatgaattgggggtaatttacctctaatgacaagtacgattcgatt 156  Q
    |||| |||||||||||||||||||||||| | ||||| |||||||||    
T  26236751 tgataaattgggggtaatttacctctaataataagtatgattcgatt 26236797  T

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Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 83
Target Start/End: Complemental strand, 23577070 - 23577009
Alignment:
Q  22 aataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgatagtaagaaaa 83  Q
    |||||| ||||| ||||| ||| ||||| |||| |||||||||||||||||| |||| ||||    
T  23577070 aataaaagagataaagaaattttatgtttttaaaatgaaaatgataattgattgtaaaaaaa 23577009  T

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Target: scaffold0136 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 36965 - 37033
Alignment:
Q  1 tgagatggacatcacatgttgaataaaggagatgaagaagtttgatgt-tcttaagatgaaaatgataa 68  Q
    ||||||| | ||||||||||||||||| ||||||||||| |||||||| | ||||||||||||||||||    
T  36965 tgagatgaagatcacatgttgaataaacgagatgaagaaatttgatgtgttttaagatgaaaatgataa 37033  T

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Target: scaffold1743 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold1743
Description:

Target: scaffold1743; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 14 - 73
Target Start/End: Complemental strand, 853 - 794
Alignment:
Q  14 acatgttgaataaaggagatgaagaagtttgatgttcttaagatgaaaatgataattgat 73  Q
    ||||||||||| ||||||||||||||||||||| | ||| | | ||||||||||| ||||    
T  853 acatgttgaatcaaggagatgaagaagtttgatatacttgaaaggaaaatgataaatgat 794  T

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Target: scaffold0047 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 26 - 73
Target Start/End: Original strand, 62744 - 62791
Alignment:
Q  26 aaggagatgaagaagtttgatgttcttaagatgaaaatgataattgat 73  Q
    |||||||| ||||||||||||||| ||||||||||| |||||| ||||    
T  62744 aaggagataaagaagtttgatgtttttaagatgaaattgataactgat 62791  T

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