View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7761_low_25 (Length: 282)
Name: NF7761_low_25
Description: NF7761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7761_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 35243368 - 35243638
Alignment:
| Q |
1 |
tttggaaagtataagagctcaaatgtggtggcatgtaagagaaggaatgaatatgtatgaggtagattttagaccagggtttgcttatcttggtgccaga |
100 |
Q |
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| T |
35243368 |
tttggaaagtataagagctcaaatgtggtggcatgtaagagaaggaatgaatatgtatgaggtagattttagaccagggtttgcttatcttggtgccaga |
35243467 |
T |
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| Q |
101 |
cacaatgtatggttgacattcaagttttaccaatgttgcctatttcaaaagtgttgttttctgatgctgaatatgtgaaggaacttgggttgggattgct |
200 |
Q |
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| T |
35243468 |
cacaatgtatggttgacattcaagttttaccaatgttgcctatttcaaaagtgttgttttctgatgctgaatatgtgaaggaacttgggttgggattgct |
35243567 |
T |
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| Q |
201 |
tggtttggggaagggtgaaaagattttgtgtatgctttgtactttgtagagaatttctgataaggaaggtg |
271 |
Q |
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| T |
35243568 |
tggtttggggaagggtgaaaagattttgtgtatgctttgtactttgtagagaatttctgataaggaaggtg |
35243638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 7 - 241
Target Start/End: Original strand, 35231962 - 35232179
Alignment:
| Q |
7 |
aagtataagagctcaaatgtggtggcatgtaagagaaggaatgaatatgtatgaggtagattttagaccagggtttgcttatcttggtgccagacacaat |
106 |
Q |
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| T |
35231962 |
aagtataagagctcaaatgtggtggcatgtaagagaagcaatgaatatgcgtgaggaaaattttagaccagggttt--------tggtgctagacacaat |
35232053 |
T |
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| Q |
107 |
gtatggttgacattcaagttttaccaatgttgcctatttcaaaagtgttgttttctgatgctgaatatgtgaaggaact---tgggttgggattgcttgg |
203 |
Q |
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| T |
35232054 |
gtatggttgacattcaagttt------------ctatttcaaaagtgttgttttatgatgttgaatatgtgaaggaacttgctgggttgggattgcttgg |
35232141 |
T |
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| Q |
204 |
tttggggaagggtgaaaagattttgtgtatgctttgta |
241 |
Q |
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| T |
35232142 |
tttggggaaggctgagaagagtttgtgcatgctttgta |
35232179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 78 - 182
Target Start/End: Original strand, 6521224 - 6521326
Alignment:
| Q |
78 |
ggtttgcttatcttggtgccagacacaatgtatggttgacattcaagttttaccaatgttgcctatttcaaaagtgttgttttctgatgctgaatatgtg |
177 |
Q |
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| T |
6521224 |
ggtttggttatcttggtgctaaaca--atgtttgcttggcattcaggttttaccattgcttcctatttcagaaatgttgttttctgatgttgaatttgtg |
6521321 |
T |
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| Q |
178 |
aagga |
182 |
Q |
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||||| |
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| T |
6521322 |
aagga |
6521326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 185
Target Start/End: Complemental strand, 6527681 - 6527615
Alignment:
| Q |
119 |
ttcaagttttaccaatgttgcctatttcaaaagtgttgttttctgatgctgaatatgtgaaggaact |
185 |
Q |
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| T |
6527681 |
ttcaagttttacccttgtcgcctatttctgaagttttgttttctgatgcaaagtatgtgaaggaact |
6527615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 6526006 - 6525966
Alignment:
| Q |
21 |
aaatgtggtggcatgtaagagaaggaatgaatatgtatgag |
61 |
Q |
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| T |
6526006 |
aaatgtggtggcatgtaaaagaaggagggaatatgtatgag |
6525966 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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