View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7761_low_27 (Length: 253)

Name: NF7761_low_27
Description: NF7761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7761_low_27
NF7761_low_27
[»] chr6 (15 HSPs)
chr6 (17-253)||(21189585-21189821)
chr6 (26-160)||(21155688-21155823)
chr6 (65-160)||(21140787-21140882)
chr6 (23-156)||(21148052-21148189)
chr6 (74-160)||(21296237-21296322)
chr6 (115-160)||(21280767-21280812)
chr6 (23-111)||(21355288-21355377)
chr6 (23-113)||(21205893-21205984)
chr6 (23-140)||(21305990-21306107)
chr6 (39-119)||(21244080-21244161)
chr6 (93-160)||(21250389-21250456)
chr6 (23-75)||(21151451-21151504)
chr6 (23-106)||(21175056-21175140)
chr6 (23-98)||(21213130-21213206)
chr6 (23-78)||(21274757-21274813)
[»] scaffold0060 (2 HSPs)
scaffold0060 (26-160)||(22740-22875)
scaffold0060 (132-160)||(16812-16840)
[»] scaffold1787 (1 HSPs)
scaffold1787 (71-160)||(877-966)


Alignment Details
Target: chr6 (Bit Score: 225; Significance: 1e-124; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 17 - 253
Target Start/End: Original strand, 21189585 - 21189821
Alignment:
Q  17 atcattatcattatcatactgattaataaaacagaccaaaataaatcagttaagaatattatgttcttggatttggatgaagtgcatagaatgaaatggt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  21189585 atcattatcattatcatactgattaataaaacagaccaaaataaaccagttaagaatattatgttcttggatttcgatgaagtgcatagaatgaaatggt 21189684  T
Q  117 gcaaaattttgaataaaaatgaagacatggccataagagaacaaatattttagaagtacaaacaatttggtggttgaaacctgtaagcaagatagttgca 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  21189685 gcaaaattttgaataaaaatgaagacatggccataagagaacaaatattttagaagtacaaacaatttggtggttgaaacctgtatgcaagatagttgca 21189784  T
Q  217 aatgtacatagaatcactttttggaagttaaactctt 253  Q
    |||||||||||||||||||||||||||||||||||||    
T  21189785 aatgtacatagaatcactttttggaagttaaactctt 21189821  T

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Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 26 - 160
Target Start/End: Original strand, 21155688 - 21155823
Alignment:
Q  26 attatcatactgattaataaaacagaccaaaataaatc-agttaagaatattatgttcttggatttggatgaagtgcatagaatgaaatggtgcaaaatt 124  Q
    ||||||||||||||| | |||| ||| | ||||||| | ||||| ||||| ||| |||||| |||  ||||||| |||| ||||||||||||||| ||||    
T  21155688 attatcatactgatttagaaaaaagatccaaataaaaccagttacgaatactatattcttgaattccgatgaagcgcatggaatgaaatggtgcacaatt 21155787  T
Q  125 ttgaataaaaatgaagacatggccataagagaacaa 160  Q
    |||||||||||||||| ||| |||||||||||||||    
T  21155788 ttgaataaaaatgaaggcatcgccataagagaacaa 21155823  T

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Target: chr6; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 65 - 160
Target Start/End: Original strand, 21140787 - 21140882
Alignment:
Q  65 gttaagaatattatgttcttggatttggatgaagtgcatagaatgaaatggtgcaaaattttgaataaaaatgaagacatggccataagagaacaa 160  Q
    |||| ||||||||| |||||| |||  || |||| |||||||||||||||||||| | |||||||||||||||||||||||| |||||||||||||    
T  21140787 gttaggaatattattttcttgaattccgaagaagcgcatagaatgaaatggtgcatagttttgaataaaaatgaagacatggtcataagagaacaa 21140882  T

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Target: chr6; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 23 - 156
Target Start/End: Original strand, 21148052 - 21148189
Alignment:
Q  23 atcattatcatactgattaataaaacagaccaaaat-aaatcagttaaga---atattatgttcttggatttggatgaagtgcatagaatgaaatggtgc 118  Q
    |||||||||||||||||||  |||| ||| |||||| ||| || |||| |   ||||||| |||||| |||  ||||||| ||||| |||||||||||||    
T  21148052 atcattatcatactgattacgaaaaaagagcaaaatcaaaccatttaaaataaatattattttcttgaattccgatgaagcgcataaaatgaaatggtgc 21148151  T
Q  119 aaaattttgaataaaaatgaagacatggccataagaga 156  Q
      ||||||||||||||||||||||||||||||||||||    
T  21148152 ccaattttgaataaaaatgaagacatggccataagaga 21148189  T

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Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 74 - 160
Target Start/End: Original strand, 21296237 - 21296322
Alignment:
Q  74 attatgttcttggatttggatgaagtgcatagaatgaaatggtgcaaaattttgaataaaaatgaagacatggccataagagaacaa 160  Q
    ||||| |||||| |||  ||||||||||||| |||||||||||||| |||| |||||||||||||||| ||| |||| |||||||||    
T  21296237 attatattcttgaattctgatgaagtgcatacaatgaaatggtgcacaattctgaataaaaatgaagagatgaccat-agagaacaa 21296322  T

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Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 115 - 160
Target Start/End: Original strand, 21280767 - 21280812
Alignment:
Q  115 gtgcaaaattttgaataaaaatgaagacatggccataagagaacaa 160  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||    
T  21280767 gtgcacaattttgaataaaaatgaagacatggccataagagaacaa 21280812  T

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Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 23 - 111
Target Start/End: Original strand, 21355288 - 21355377
Alignment:
Q  23 atcattatcatactgattaataaaacagaccaaaat-aaatcagttaagaatattatgttcttggatttggatgaagtgcatagaatgaa 111  Q
    |||||||||||||||||||| |||| |||||||||| ||| |||||| ||||||||| |||||| |||  ||||||| |||| |||||||    
T  21355288 atcattatcatactgattaagaaaaaagaccaaaataaaaccagttacgaatattatattcttgaattccgatgaagcgcatggaatgaa 21355377  T

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Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 23 - 113
Target Start/End: Original strand, 21205893 - 21205984
Alignment:
Q  23 atcattatcatactgattaataaaacagaccaaaat-aaatcagttaagaatattatgttcttggatttggatgaagtgcatagaatgaaat 113  Q
    ||||||||||||||||| || |||| |||||||||| ||| ||||||||||||| || |||||| |||  |||||| |||||||| ||||||    
T  21205893 atcattatcatactgatcaagaaaaaagaccaaaataaaaccagttaagaatatgattttcttgaattccgatgaaatgcatagattgaaat 21205984  T

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Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 23 - 140
Target Start/End: Original strand, 21305990 - 21306107
Alignment:
Q  23 atcattatcatactgattaataaaacagaccaaaata-aatcagttaagaatattatgttcttggatttggatgaagtgcatagaatgaaatggtgcaaa 121  Q
    |||||| |||||| |||||| |||| |||| |||||| || || |||| |||||||  |||||| |||  |||||||  ||||||||||||||||||| |    
T  21305990 atcattctcatacagattaagaaaaaagacgaaaatagaaccacttaa-aatattagtttcttgaattccgatgaagcacatagaatgaaatggtgcaca 21306088  T
Q  122 attttgaataaaaatgaag 140  Q
    ||||||| |||||||||||    
T  21306089 attttgattaaaaatgaag 21306107  T

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Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 119
Target Start/End: Complemental strand, 21244161 - 21244080
Alignment:
Q  39 ttaataaaacagaccaaaataaatc-agttaagaatattatgttcttggatttggatgaagtgcatagaatgaaatggtgca 119  Q
    |||| |||| ||||||||||||| | ||||||||||||||| ||| || |||| ||||||| ||||| ||||||||||||||    
T  21244161 ttaagaaaaaagaccaaaataaaaccagttaagaatattatattcctgaattttgatgaagcgcatataatgaaatggtgca 21244080  T

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Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 93 - 160
Target Start/End: Complemental strand, 21250456 - 21250389
Alignment:
Q  93 atgaagtgcatagaatgaaatggtgcaaaattttgaataaaaatgaagacatggccataagagaacaa 160  Q
    |||||| || || |||||||||||||| | ||||||||||||| ||||||||||||| |||| |||||    
T  21250456 atgaagcgcgtaaaatgaaatggtgcacagttttgaataaaaacgaagacatggccaaaagataacaa 21250389  T

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Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 75
Target Start/End: Original strand, 21151451 - 21151504
Alignment:
Q  23 atcattatcatactgattaataaaacagaccaaaat-aaatcagttaagaatat 75  Q
    |||||| ||||||||||||| |||| |||||||||| |||||||||||||||||    
T  21151451 atcattctcatactgattaagaaaaaagaccaaaataaaatcagttaagaatat 21151504  T

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Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 106
Target Start/End: Original strand, 21175056 - 21175140
Alignment:
Q  23 atcattatcatactgattaataaaacagaccaaaataaatc-agttaagaatattatgttcttggatttggatgaagtgcataga 106  Q
    |||||||||||| ||||| | ||||  ||| |||||||| | ||||||||||||||| |||||| |||| ||||||| |||||||    
T  21175056 atcattatcatattgattcagaaaaaggacaaaaataaaaccagttaagaatattattttcttgaattttgatgaagcgcataga 21175140  T

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Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 98
Target Start/End: Original strand, 21213130 - 21213206
Alignment:
Q  23 atcattatcatactgattaataaaacagaccaaaataaatc-agttaagaatattatgttcttggatttggatgaag 98  Q
    |||||| ||||||||||||| |||| |||  |||||||| | |||||| ||||||||||||||| |||| |||||||    
T  21213130 atcattctcatactgattaagaaaaaagagaaaaataaaaccagttaaaaatattatgttcttgaatttcgatgaag 21213206  T

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Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 78
Target Start/End: Original strand, 21274757 - 21274813
Alignment:
Q  23 atcattatcatactgattaataaaacagaccaaaat-aaatcagttaagaatattat 78  Q
    |||||||||||||||||||| |||| |||||||  | ||| ||||||||||||||||    
T  21274757 atcattatcatactgattaagaaaaaagaccaatttaaaaccagttaagaatattat 21274813  T

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Target: scaffold0060 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 26 - 160
Target Start/End: Complemental strand, 22875 - 22740
Alignment:
Q  26 attatcatactgattaataaaacagaccaaaataaatc-agttaagaatattatgttcttggatttggatgaagtgcatagaatgaaatggtgcaaaatt 124  Q
    ||||||||||||||||| |||| |||| |||||||| | ||||||||||||||| |||||| |||  ||||||| ||||| ||| ||||| |||| ||||    
T  22875 attatcatactgattaagaaaaaagacaaaaataaaaccagttaagaatattattttcttgaattccgatgaagcgcataaaataaaatgatgcacaatt 22776  T
Q  125 ttgaataaaaatgaagacatggccataagagaacaa 160  Q
    ||||||||||||||||||||||||||||||||||||    
T  22775 ttgaataaaaatgaagacatggccataagagaacaa 22740  T

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Target: scaffold0060; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 160
Target Start/End: Complemental strand, 16840 - 16812
Alignment:
Q  132 aaaatgaagacatggccataagagaacaa 160  Q
    |||||||||||||||||||||||||||||    
T  16840 aaaatgaagacatggccataagagaacaa 16812  T

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Target: scaffold1787 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold1787
Description:

Target: scaffold1787; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 71 - 160
Target Start/End: Complemental strand, 966 - 877
Alignment:
Q  71 aatattatgttcttggatttggatgaagtgcatagaatgaaatggtgcaaaattttgaataaaaatgaagacatggccataagagaacaa 160  Q
    |||| ||| |||||| |||  ||||||| || || ||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  966 aatactattttcttgaattccgatgaagcgcttaaaatcaaatggtgcaaaattttaaatataaatgaagacatggccataagagaacaa 877  T

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