View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7761_low_29 (Length: 239)
Name: NF7761_low_29
Description: NF7761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7761_low_29 |
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| [»] scaffold0376 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 29729380 - 29729158
Alignment:
| Q |
1 |
ttggtgaagtacttctttttcgagcagtaactctgcaatttcagctacttttcccttgcgttcttctataagttgaatggtatgtttgtatgctttgttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29729380 |
ttggtgaagtacttctttttcgagcagtaactctgcaatttcagctacttttcccttgcgttcttctataagttgaatggtatgtttgtatgctttgttc |
29729281 |
T |
|
| Q |
101 |
acccattctcgtacttcattatcgatgattgcaccagttttactgctgtatggtttggacgtctcagaagagtcctctctttgagggaaagagaggaggc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29729280 |
acccattctcgtacttcattatcgatgattgcaccagttttactgctgtatggtttggacgtctcagaagagtcctctctttgagggaaagagaggaggc |
29729181 |
T |
|
| Q |
201 |
caactttttcgctgaaaccatag |
223 |
Q |
| |
|
||||||||||||||||||||||| |
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|
| T |
29729180 |
caactttttcgctgaaaccatag |
29729158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 38513038 - 38513260
Alignment:
| Q |
1 |
ttggtgaagtacttctttttcgagcagtaactctgcaatttcagctacttttcccttgcgttcttctataagttgaatggtatgtttgtatgctttgttc |
100 |
Q |
| |
|
||||||||| ||||||||||| || || |||||||||| || ||||||||| |||| ||| |||||||| || | ||| ||| |||||||||| | |
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| T |
38513038 |
ttggtgaagaacttctttttcaagaagcaactctgcaagttgagctactttctccttctgtttctctataagctgcacagtacgttcatatgctttgtcc |
38513137 |
T |
|
| Q |
101 |
acccattctcgtacttcattatcgatgattgcaccagttttactgctgtatggtttggacgtctcagaagagtcctctctttgagggaaagagaggaggc |
200 |
Q |
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||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||| ||| |||| | ||||||||| ||||||||||||||||||||| |
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| T |
38513138 |
acccattctcgcacttcattatcaatgattgcaccagttttgttgctgtatggtttagacatctctaacgagtcctctttttgagggaaagagaggaggc |
38513237 |
T |
|
| Q |
201 |
caactttttcgctgaaaccatag |
223 |
Q |
| |
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| ||||||||||||||||||||| |
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| T |
38513238 |
ccactttttcgctgaaaccatag |
38513260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 154; Significance: 8e-82; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 16850008 - 16849847
Alignment:
| Q |
1 |
ttggtgaagtacttctttttcgagcagtaactctgcaatttcagctacttttcccttgcgttcttctataagttgaatggtatgtttgtatgctttgttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16850008 |
ttggtgaagtacttctttttcgagcaataactctgcaatttcagctacttttcccttgtgttcttctataagttgaatggtatgtttgtatgctttgttc |
16849909 |
T |
|
| Q |
101 |
acccattctcgtacttcattatcgatgattgcaccagttttactgctgtatggtttggacgt |
162 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16849908 |
acccattctcgtacttcattatcgatgattgcaccagttttactgctgtatggtttggacgt |
16849847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 158 - 223
Target Start/End: Complemental strand, 16838698 - 16838633
Alignment:
| Q |
158 |
gacgtctcagaagagtcctctctttgagggaaagagaggaggccaactttttcgctgaaaccatag |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
16838698 |
gacgtctcagaagagtcctctctttgagggaaagagaggaggccaactttttcgctgaaaccatag |
16838633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 139; Significance: 7e-73; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 45285669 - 45285447
Alignment:
| Q |
1 |
ttggtgaagtacttctttttcgagcagtaactctgcaatttcagctacttttcccttgcgttcttctataagttgaatggtatgtttgtatgctttgttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||| | || |||||||||||| | ||| |||||| ||| |||||||| || |||||||||||||||||||||||| |
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| T |
45285669 |
ttggtgaagtacttctttttcgagcaacagctttgcaatttcagccaatttccccttgtattcctctataagctgtatggtatgtttgtatgctttgttc |
45285570 |
T |
|
| Q |
101 |
acccattctcgtacttcattatcgatgattgcaccagttttactgctgtatggtttggacgtctcagaagagtcctctctttgagggaaagagaggaggc |
200 |
Q |
| |
|
|||| ||||| ||||||||||| |||||||||| |||||| |||||||||||||||||||||||| |||||||||| ||| |||||||||||||||||| |
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|
| T |
45285569 |
accctatctcgcacttcattatcaatgattgcactagttttgctgctgtatggtttggacgtctcaaaagagtcctcacttggagggaaagagaggaggc |
45285470 |
T |
|
| Q |
201 |
caactttttcgctgaaaccatag |
223 |
Q |
| |
|
||||||||||||||||||||||| |
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| T |
45285469 |
caactttttcgctgaaaccatag |
45285447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0376 (Bit Score: 129; Significance: 7e-67; HSPs: 1)
Name: scaffold0376
Description:
Target: scaffold0376; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 8 - 223
Target Start/End: Complemental strand, 3900 - 3682
Alignment:
| Q |
8 |
agtacttctttttcgagcagtaactctgcaatttcagctacttttcccttgcgttcttctataagttgaatggtatgtttgtatgctttgttcacccatt |
107 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||| ||||| || ||||||||| |||||||||||||||||| |
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|
| T |
3900 |
agtacttctttttcgagcagcaactctgcaatttcagctacttttcccttgtgttcctctattagttgtatagtatgtttgaatgctttgttcacccatt |
3801 |
T |
|
| Q |
108 |
ctcgtacttcattatcgatgattgcaccagttttactgctgtatggtttggacgtctcagaagagtcctctct---ttgagggaaagagaggaggccaac |
204 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||| |||||||||||||||||| ||||| | || |||||| | ||||||||||||||||||||||| |
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|
| T |
3800 |
ctcgtacttccttatcaatgattgcaccagtttcgctgctgtatggtttggacatctcaaacgaatcctctttatgatgagggaaagagaggaggccaac |
3701 |
T |
|
| Q |
205 |
tttttcgctgaaaccatag |
223 |
Q |
| |
|
|| |||||| ||||||||| |
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|
| T |
3700 |
ttgttcgctaaaaccatag |
3682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 20477557 - 20477778
Alignment:
| Q |
1 |
ttggtgaagtacttctttttcgagcagtaactctgcaatttcagctacttttcccttgcgttcttctataagttgaatggtatgtttgtatgctttgttc |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| |||||||||||| |||||| ||| |||||||| | |||||||||||||||||||| ||| |
|
|
| T |
20477557 |
ttggtgaagtacttctttttcgagcagcaactctgcaacttcagctactttccccttgtattcctctataagctctatggtatgtttgtatgctttcttc |
20477656 |
T |
|
| Q |
101 |
acccattctcgtacttcattatcgatgattgcaccagttttactgctgtatggtttggacgtctcagaagagtcctctctttgagggaaagagaggaggc |
200 |
Q |
| |
|
||||| ||||| ||||| ||||| ||||| |||| ||||| |||||||||||||||||||||||| |||||||||| || |||||||||||| |||| |
|
|
| T |
20477657 |
acccaatctcgcacttcgttatcaatgatcgcactagtttcgctgctgtatggtttggacgtctcaaaagagtcctcaattgaagggaaagagagaaggc |
20477756 |
T |
|
| Q |
201 |
caactttttcgctgaaaccata |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
20477757 |
caactttttcgctgaaaccata |
20477778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 24005708 - 24005592
Alignment:
| Q |
1 |
ttggtgaagtacttctttttcgagcagtaactctgcaatttcagctacttttcccttgcgttcttctataagttgaatggtatgtttgtatgctttgttc |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||| ||||| ||| ||||| ||||||||||||| || | |||| ||| ||||| | |||| |
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|
| T |
24005708 |
ttggtgaagtacttctttttcgagaagtaactctgcaatttgagctagtttctccttgtgttcttctataagctgtacggtacgttcatatgcatggttc |
24005609 |
T |
|
| Q |
101 |
acccattctcgtacttc |
117 |
Q |
| |
|
||||| ||||| ||||| |
|
|
| T |
24005608 |
acccaatctcgcacttc |
24005592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 223
Target Start/End: Complemental strand, 24005535 - 24005492
Alignment:
| Q |
180 |
tttgagggaaagagaggaggccaactttttcgctgaaaccatag |
223 |
Q |
| |
|
||||||||||||||||||| || |||||||| |||||||||||| |
|
|
| T |
24005535 |
tttgagggaaagagaggagacccactttttcactgaaaccatag |
24005492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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