View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7761_low_3 (Length: 784)
Name: NF7761_low_3
Description: NF7761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7761_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 345; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 14 - 422
Target Start/End: Original strand, 48151013 - 48151420
Alignment:
| Q |
14 |
agtaccccaccctcatgttcatagatgctcatgcatcatcaacatattgctatttgtttatgaaatgtgtaaaaaggaagaaagcacaatgcaaagtgct |
113 |
Q |
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| T |
48151013 |
agtaccccaccctcatgttcatagatgctcatgcatcatcaacatattgctatttgtttatgaaatgtgtaaaaaggaagaaagcacaatgcaaagtgct |
48151112 |
T |
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| Q |
114 |
tacctttgatctgcggtttgtagttgatttggtatagtgcaaagatgatcattcaagctagtttgccaatgaaattcggaagtgttggtatttcaaatgt |
213 |
Q |
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| T |
48151113 |
tacctttgatctgcggtttgtagttgatttggtatagtgcaaagatgatcattcaagctagtttgccaatgaaattcggacgtgttggtatttcaaatgt |
48151212 |
T |
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| Q |
214 |
tagtaaaaatctctcgtgaatagaaaagttgatcttgaaaaatcacttatatg--tttannnnnnnaaataacacttatatgtttgttgttagtaatcta |
311 |
Q |
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| T |
48151213 |
tagtaaaaatctctcgtgaatagaaaagttgatcttgaaaaatcacttatatgttttttttattttaaataacacttatatgtttgttgttagtaatcta |
48151312 |
T |
|
| Q |
312 |
atgtgatcatttcataaaccttttgggattttattatagtcggtctaatcgaaccgagcttaactggactgaacctgttgaaccatggttggttcaacca |
411 |
Q |
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| T |
48151313 |
atgtgataa---cataaaccttttgggattttattatagtcggtctaatcgaaccgagcttaactagactgaaccggttgaaccatggttggttcaacca |
48151409 |
T |
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| Q |
412 |
aaagtaccttg |
422 |
Q |
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| T |
48151410 |
aaagtaccttg |
48151420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 468 - 772
Target Start/End: Original strand, 48151466 - 48151752
Alignment:
| Q |
468 |
actcatgttaaaccgagcgatttagctgannnnnnnggtgttaacccttttgtttttaaaagaaatatcttctagtaatcaaaagtttggtcaattgata |
567 |
Q |
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|||||||||||||| |||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |
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| T |
48151466 |
actcatgttaaaccaagcgatttagctgatttttttggtgttaacccttttgtttttagaagaaatatcttctagtaatcaaaagtttggtcaatagata |
48151565 |
T |
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| Q |
568 |
agcaaaattttactaagaattatttttatcaggaatcaaattcaaannnnnnnnnnnncttcaaatgatttgtttcaaaggatacataaaagtctcaccc |
667 |
Q |
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| T |
48151566 |
agcaaaattttactaagaattatttttatcaggaatcgaattcagatt-----------tt-------tttttttcaaaggatacataaaagtctcaccc |
48151647 |
T |
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| Q |
668 |
ggtcaatatttgtgaagactttagactcaagctcgttaatgggcttgaatgcaagaataacatgacgcaccggttcatttaatttatttcttggcttgat |
767 |
Q |
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| T |
48151648 |
ggtcaatatttgtgaagactttagactcaagctcgttaatggccttgaatgcaagaataacatgacgcaccggttcatttaatttatttcttggcttgat |
48151747 |
T |
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