View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7761_low_30 (Length: 237)
Name: NF7761_low_30
Description: NF7761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7761_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 44630677 - 44630460
Alignment:
| Q |
1 |
ggagaaaatcatcagaattgtcacctcaaattaactaaaagataggatttgcaaatcaaagctgacttggaaaagttgtttcttccacagttagcttgaa |
100 |
Q |
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| T |
44630677 |
ggagaaaatcatcagaattgtcacctcaaattaactaaaagataggatttgcaaatcaaagctgacttggaaaagttgtttcttccacagttagcttgaa |
44630578 |
T |
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| Q |
101 |
ttataagctaagtagctcactaatgatgctaaaagtagaaaaagacttaataatcttgatattaatcgccactattaattatgaaccatactttaatcgt |
200 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
44630577 |
ttataagctaactagctcactaatgatgctaaaagtagaaaaagacttaataatcttgatattaatcgccactattaattatgaaccatattttaatcgt |
44630478 |
T |
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| Q |
201 |
atattccattgacatacg |
218 |
Q |
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|||||||||||||||||| |
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| T |
44630477 |
atattccattgacatacg |
44630460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 52 - 182
Target Start/End: Complemental strand, 44652068 - 44651937
Alignment:
| Q |
52 |
caaatcaaagctgacttggaaaagttgtttcttccacagttagcttgaattataagctaagtagctcactaatgatgctaaaagtagaaaaa-gacttaa |
150 |
Q |
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||||| ||| ||||||||||| |||| ||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||||||| || | | |
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| T |
44652068 |
caaattaaacctgacttggaagagttctttcttccacagttagcttaaattataagctaagtaggtcactaatgctgctaaaagtagaaaaatgaaatta |
44651969 |
T |
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| Q |
151 |
taatcttgatattaatcgccactattaattat |
182 |
Q |
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| T |
44651968 |
tattcttgataataatcgcaaccattaattat |
44651937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 58 - 182
Target Start/End: Complemental strand, 44680882 - 44680762
Alignment:
| Q |
58 |
aaagctgacttggaaaagttgtttcttccacagttagcttgaattataagctaagtagctcactaatgatgctaaaagtagaaaaagacttaataatctt |
157 |
Q |
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||||||||||||||| |||| |||||||||||||||| |||||||||||||||| |||| |||| |||||||||||||||||||| | || |||| |
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| T |
44680882 |
aaagctgacttggaagagtt----cttccacagttagcttaaattataagctaagtaattcaccaatgctgctaaaagtagaaaaagacattgtattctt |
44680787 |
T |
|
| Q |
158 |
gatattaatcgccactattaattat |
182 |
Q |
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||||||||||||||||||||||||| |
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| T |
44680786 |
gatattaatcgccactattaattat |
44680762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 3 - 63
Target Start/End: Complemental strand, 44624654 - 44624594
Alignment:
| Q |
3 |
agaaaatcatcagaattgtcacctcaaattaactaaaagataggatttgcaaatcaaagct |
63 |
Q |
| |
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||||||| |||||||||||||| |||||||||||||||||||||||||| ||| ||||||| |
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| T |
44624654 |
agaaaataatcagaattgtcacatcaaattaactaaaagataggatttgaaaaacaaagct |
44624594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 136 - 197
Target Start/End: Complemental strand, 44624553 - 44624492
Alignment:
| Q |
136 |
tagaaaaagacttaataatcttgatattaatcgccactattaattatgaaccatactttaat |
197 |
Q |
| |
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||||||||||| | ||||||||||||||||| |||||||||||||| ||||||| |||||| |
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| T |
44624553 |
tagaaaaagacattgtaatcttgatattaatcaccactattaattataaaccatattttaat |
44624492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 137 - 205
Target Start/End: Original strand, 45348873 - 45348941
Alignment:
| Q |
137 |
agaaaaagacttaataatcttgatattaatcgccactattaattatgaaccatactttaatcgtatatt |
205 |
Q |
| |
|
|||||||||| | ||||||||||||||||| |||||||||||||| ||||||| |||| | ||||||| |
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| T |
45348873 |
agaaaaagacattgtaatcttgatattaatcaccactattaattataaaccatattttagttgtatatt |
45348941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 137 - 205
Target Start/End: Original strand, 45358352 - 45358420
Alignment:
| Q |
137 |
agaaaaagacttaataatcttgatattaatcgccactattaattatgaaccatactttaatcgtatatt |
205 |
Q |
| |
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|||||||||| | ||||||||||||||||| |||||||||||||| ||||||| |||| | ||||||| |
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| T |
45358352 |
agaaaaagacattgtaatcttgatattaatcaccactattaattataaaccatattttagttgtatatt |
45358420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 119
Target Start/End: Complemental strand, 44691109 - 44691058
Alignment:
| Q |
67 |
ttggaaaagttgtttcttccacagttagcttgaattataagctaagtagctca |
119 |
Q |
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|||||| |||||||||||||| ||||| ||||| |||||||||||||||||| |
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| T |
44691109 |
ttggaagagttgtttcttcca-agttaacttgacgtataagctaagtagctca |
44691058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 97
Target Start/End: Original strand, 45348796 - 45348836
Alignment:
| Q |
57 |
caaagctgacttggaaaagttgtttcttccacagttagctt |
97 |
Q |
| |
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|||||||||| ||||| ||||||||||||||||||||||| |
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| T |
45348796 |
caaagctgacgtggaagtgttgtttcttccacagttagctt |
45348836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 97
Target Start/End: Original strand, 45358275 - 45358315
Alignment:
| Q |
57 |
caaagctgacttggaaaagttgtttcttccacagttagctt |
97 |
Q |
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|||||||||| ||||| ||||||||||||||||||||||| |
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| T |
45358275 |
caaagctgacgtggaagtgttgtttcttccacagttagctt |
45358315 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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