View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7761_low_6 (Length: 540)
Name: NF7761_low_6
Description: NF7761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7761_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 492; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 17 - 527
Target Start/End: Original strand, 45713540 - 45714051
Alignment:
| Q |
17 |
agatactaacgggtaaattcccagagaactatattacaccaaggtataatagtgattctgacttagcaagttgggtaaatatgttaattactgagaagag |
116 |
Q |
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| T |
45713540 |
agatactaacgggtaaattcccagagaactatattacaccaaggtataatagtgattctgacttagcaagttgggtaaatatgttaattactgagaagag |
45713639 |
T |
|
| Q |
117 |
gacaagtgaggtatttgacgttgagatgggaggaatcggaactagtaaagctgaattactcaaactattaaagattggtctaagttgttgtgaagagaat |
216 |
Q |
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| T |
45713640 |
gacaagtgaggtatttgacgttgagatgggaggaatcggaactagtaaagctgaattactcaaactattaaagattggtctaagttgttgtgaagagaat |
45713739 |
T |
|
| Q |
217 |
gttgaaagaaggttggacatcaaagaggctcttcaacagattgaagaattgaaagaaacaacgattgatggaggagaatactcttcctcccttatcacct |
316 |
Q |
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| T |
45713740 |
gttgaaagaaggttggacatcaaagaggctcttcaacagattgaagaattgaaagaaacaacaattgatggaggagaatactcttcctcccttatcacct |
45713839 |
T |
|
| Q |
317 |
ctaccgaaagggatgcttacagagctgtgtgatttcctcattaacatcaatccaatccaatatatgcaattaa-ttaaccttgaattaattctttctaca |
415 |
Q |
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| T |
45713840 |
ctaccgaaagggatgcttacagagctgtgtgatttcctcattaacatcaatccaatccaatatatgcaattaatttaaccttgaattaattttttctaca |
45713939 |
T |
|
| Q |
416 |
tctttttcttgttaatacatagcataggtatttgcagtgatttttcaaccccacatttgtactattacttttgttagtaatttaattaggtttagtaaat |
515 |
Q |
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| T |
45713940 |
tctttttcttgttaatacatagcataggtatttgcagtgatttttcaaccccacatttgtactattacttttgttagtaatttaattaggtttagtaaat |
45714039 |
T |
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| Q |
516 |
caagtgatgtcc |
527 |
Q |
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| T |
45714040 |
caagttatgtcc |
45714051 |
T |
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