View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7761_low_9 (Length: 486)
Name: NF7761_low_9
Description: NF7761
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7761_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 455; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 16 - 474
Target Start/End: Complemental strand, 42357566 - 42357108
Alignment:
| Q |
16 |
attaccatagtttcttccttcaacaatcttcacttcaacttcaccttctgaccctgaagactttcttctttgagaagaagtaacacttggaaaagttatc |
115 |
Q |
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| T |
42357566 |
attaccatagtttcttccttcaacaatcttcacttcaacttcaccttctgaccctgaagactttcttctttgagaagaagtaacacttggaaaagttatc |
42357467 |
T |
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| Q |
116 |
caagaaggtgctctaaactcaaacctttgatcttcaccttcgactacatcgatttctgaagctgaccgatttgaagacctttgagatgttttcttatgca |
215 |
Q |
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| T |
42357466 |
caagaaggtgctctaaactcaaacctttgatcttcaccttcgactacatcgatttctgaagccgaccgatttgaagacctttgagatgttttcttatgca |
42357367 |
T |
|
| Q |
216 |
ttctattacttcctagaacaacctcagttggcaaaattggttgatcaatacaaggacttcccattaacattgctaaagctctttccaaacttgttgttac |
315 |
Q |
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| T |
42357366 |
ttctattacttcctagaacaacctcagttggcaaaattggttgatcaatacaaggacttcccattaacattgctaaagctctttccaaacttgttgttac |
42357267 |
T |
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| Q |
316 |
tttgtccattgaaggcctatctttacctctcattctcacacatttacaagcaacatttgctatccttctcaatgcttctatatcagaaggtggtttcaaa |
415 |
Q |
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| T |
42357266 |
tttgtccattgaaggcctatctttacctctcattctcacacatttacaagcaacatttgctatccttctcaatgcttctatatcagaaggtggtttcaaa |
42357167 |
T |
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| Q |
416 |
caagggtctaaaatcgaagctatatcgcccgattttattaatggaaccgaccattgaac |
474 |
Q |
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| T |
42357166 |
caagggtctaaaatcgaagctatatcgcccgattttattaatggaaccgaccattgaac |
42357108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 124; Significance: 1e-63; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 74 - 411
Target Start/End: Original strand, 25372090 - 25372412
Alignment:
| Q |
74 |
gactttcttctttgagaagaagtaacacttggaaaagttatccaagaaggtgctctaaactcaaacctttgatcttcaccttcgactacatcgatttctg |
173 |
Q |
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|||||||||||||||||||| || ||||| || || |||||||| ||||||||||||| |||||||||| |||| ||| ||||| | |
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| T |
25372090 |
gactttcttctttgagaagatgtgacactagggaatgttatccatgaaggtgctctaagctcaaaccttggatcctca---------------atttcag |
25372174 |
T |
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| Q |
174 |
aagctgaccgatttgaagacctttgagatgttttcttatgcattctattacttcctagaacaacctcagttggcaaaattggttgatcaatacaaggact |
273 |
Q |
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|| ||||| ||||||||| |||||||||| |||||| |||| |||||||||||||| ||||||||||| || ||||||||||||||||| || ||||| |
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| T |
25372175 |
aaactgacatatttgaagatctttgagatggtttcttgtgcaatctattacttcctaaaacaacctcagaaggtaaaattggttgatcaatgcatggact |
25372274 |
T |
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| Q |
274 |
tcccattaacattgctaaagctctttccaaacttgttgttactttgtccattgaaggcctatctttacctctcattctcacacatttacaagcaacattt |
373 |
Q |
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|||||||||| || | | ||||||||||| |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||| |
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| T |
25372275 |
gcccattaacacagcaagacctctttccaaagctgttgttactttgtccattgaaggtctatcttttcctctcattctcacacatttacaagctacatta |
25372374 |
T |
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| Q |
374 |
gctatccttctcaatgcttctatatcagaaggtggttt |
411 |
Q |
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|||||| || |||||||||| | |||| ||||||||| |
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| T |
25372375 |
gctatctttttcaatgcttcaagatcatgaggtggttt |
25372412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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