View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7762_high_1 (Length: 447)
Name: NF7762_high_1
Description: NF7762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7762_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 4 - 370
Target Start/End: Original strand, 56019062 - 56019428
Alignment:
| Q |
4 |
aagaatatccgccactgatgcataatgtaatacacataaatctagacatgcatgcgttgaatatggtctatcctatgaaagctagctacagaatattgaa |
103 |
Q |
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| T |
56019062 |
aagaaaatccgccactgatgcatcatgtaatacacataaagctagacatgcatgcgttgaatatggtctatcctatgaaagctagctacagaatattgaa |
56019161 |
T |
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| Q |
104 |
aaagcagagtcattcatgcttttctctcgccttgtttacgaatgataatcaatatttttaagtcatgatcatgttattttttgcaatatacatagtaatc |
203 |
Q |
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| T |
56019162 |
aaagcagagtcattcatgctcttctctcgccttgtttacgaatgataatcaatatttttaagtcatgatcatgttattttttgcaatatacatagtaatc |
56019261 |
T |
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| Q |
204 |
aattgggatctagtagaaatgattgatgtgcaatgtgtgtaaatgttggaaattctcgtagtcgaaaacaaaatacacatcaaaagttatgccaaatgag |
303 |
Q |
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| T |
56019262 |
aattgggacctagtagaaatgattgatgtgcaatgtgtgtaaatgttggaaattctcgtagtcgaaaacaaaatagacatcaaaagttatgccaaatgag |
56019361 |
T |
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| Q |
304 |
ataatgtaacaacagaaattaagtcataaaacagaacaacaacgcttatgcaatcacacacaccatc |
370 |
Q |
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| T |
56019362 |
ataatgtaacaacagaaatcaagccataaaacagaacaacaacgcttatgcaatcacacacaccatc |
56019428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 365 - 427
Target Start/End: Original strand, 56019482 - 56019544
Alignment:
| Q |
365 |
accatcacccttaagccaacatgttttgcataatactattagacttgatctccatgccataaa |
427 |
Q |
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| T |
56019482 |
accatcacccttaagccaacatgttttgcataatactattagacttgatctccatgccataaa |
56019544 |
T |
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