View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7762_high_2 (Length: 376)
Name: NF7762_high_2
Description: NF7762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7762_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 135 - 372
Target Start/End: Original strand, 43383301 - 43383541
Alignment:
| Q |
135 |
gaacaacattgctcgtacttgcactgaatgtggtaagatattctggtcatggaaggctctttttggtcatatgcgttgtcatcctgagcgtgaatggaga |
234 |
Q |
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| T |
43383301 |
gaacaacattgctcgtacttgcactgaatgtggtaagatattctggtcatggaaggctctttttggtcatatgcgttgtcatcctgagcgtgaatggaga |
43383400 |
T |
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| Q |
235 |
ggcattaaccctcctcctaatttcagaagacaacaacttgttgtgactccagaagaacaggaaggtgctgcttctttgctcttacttgctaattcaaatc |
334 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
43383401 |
ggcattaaccctccacctaatttcagaagacaacaacttgttgtgactccagaagaacaggaaggtgctgcttctttgctcttactttctaattcaaatc |
43383500 |
T |
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| Q |
335 |
caaagaacaagaaagc---agcaaaatcaacaacaacggtg |
372 |
Q |
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| T |
43383501 |
caaagaacaagaaagcaaaagcaaaagcaacaacaacggtg |
43383541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 136 - 347
Target Start/End: Original strand, 25870023 - 25870237
Alignment:
| Q |
136 |
aacaacattgctcgtacttgcactgaatgtggtaagatattctggtcatggaaggctctttttggtcatatgcgttgtcatcctgagcgtgaatggagag |
235 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
25870023 |
aacaacattgctcgtacttgcactgaatgtggtaagatattctggtcatggaaggctctttttggtcatatgcgttgtcatcctgagcgtcaatggagag |
25870122 |
T |
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| Q |
236 |
gcattaaccctcctcctaatttcagaagacaacaacttg---ttgtgactccagaagaacaggaaggtgctgcttctttgctcttacttgctaattcaaa |
332 |
Q |
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| T |
25870123 |
gcattaaccctcctcctaatttcagaagacaacaacaacaacttgtgactccagaagaacaggaaggtgctgcttctttgcttttacttgctaattcaaa |
25870222 |
T |
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| Q |
333 |
tccaaagaacaagaa |
347 |
Q |
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| T |
25870223 |
tccaaagaacaagaa |
25870237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 43383182 - 43383282
Alignment:
| Q |
1 |
ggagataaaaattggtccgatgatcatagtagtggtgatcaatacaggatgaaagatgattctgttaatgttactggtaagaagaagcgtaaggaattgg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||| |
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| T |
43383182 |
ggagataaaaattggtccgatgatcatagtagtggtgatcaatacaggatgaaagatga------tactgttactggtaagaagaagagtaaggaattgg |
43383275 |
T |
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| Q |
101 |
gtgggga |
107 |
Q |
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||||||| |
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| T |
43383276 |
gtgggga |
43383282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 79 - 107
Target Start/End: Original strand, 25869981 - 25870009
Alignment:
| Q |
79 |
aagaagaagcgtaaggaattgggtgggga |
107 |
Q |
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| T |
25869981 |
aagaagaagcgtaaggaattgggtgggga |
25870009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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