View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7762_low_6 (Length: 212)
Name: NF7762_low_6
Description: NF7762
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7762_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 107; Significance: 8e-54; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 16 - 195
Target Start/End: Complemental strand, 22831843 - 22831646
Alignment:
| Q |
16 |
aatattcccccactactacagatggaaagaaaatttgtgcttcgaatgtgctcatttattcaaatgtgtaacacattcatgt------------------ |
97 |
Q |
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| T |
22831843 |
aatattcccccacaactacagatggaaagaaaaattgtggttcaaatgtgctcatttattcaaatgtgtaacacattaattttcactaaactaaatatct |
22831744 |
T |
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| Q |
98 |
cagatgataaggcaatttaagaaaccttgtcaagtgatgtttctttcagtaataattcgtagctaggttccaggatatttcttagtaggtcccaaatt |
195 |
Q |
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| T |
22831743 |
cagatgataaggcaatttaagaaactttgtcaagtgatgtttctttcagtaataattcgtagctaggttccaggacatttcttagtaggtcccaaatt |
22831646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 97 - 195
Target Start/End: Complemental strand, 22840772 - 22840673
Alignment:
| Q |
97 |
tcagatgataa-ggcaatttaagaaaccttgtcaagtgatgtttctttcagtaataattcgtagctaggttccaggatatttcttagtaggtcccaaatt |
195 |
Q |
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| T |
22840772 |
tcagatgataaaggcaaatttagtaacctggtcatgaaatgtttctttcagaaataattcgtagctaggttccaggacatttcttagtaggacccaaatt |
22840673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 19 - 95
Target Start/End: Complemental strand, 22810470 - 22810396
Alignment:
| Q |
19 |
attcccccactactacagatggaaagaaaatttgtgcttcgaatgtgctcatttattcaaatgtgtaacacattcat |
95 |
Q |
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| T |
22810470 |
attcccccgctactacagatggaaagaaaat--gtggttcaaatgtgcacatttattcaaatgtgtaacacattcat |
22810396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 98 - 195
Target Start/End: Complemental strand, 22886210 - 22886118
Alignment:
| Q |
98 |
cagatgataaggcaatttaagaaaccttgtcaagtgatgtttctttcagtaataattcgtagctaggttccaggatatttcttagtaggtcccaaatt |
195 |
Q |
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| T |
22886210 |
cagatgataaggcaattttagtaac-----catgtgatgtttcttttagtaataattcgtagctaggttctaggaaatttcttagtaggacccgaatt |
22886118 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 22859177 - 22859131
Alignment:
| Q |
19 |
attcccccactactacagatggaaagaaaatttgtgcttcgaatgtg |
65 |
Q |
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| T |
22859177 |
attcccccactactacagatggaaagaaaatttgtggttcaaatgtg |
22859131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 195
Target Start/End: Complemental strand, 22806027 - 22805924
Alignment:
| Q |
98 |
cagatgataa-ggcaatttaagaaaccttgtcaagtgatgtttctttcagtaataattcgtagc-----taggttccaggatatttcttagtaggtccca |
191 |
Q |
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|||||||||| |||||||| || |||| ||||| ||||||||||||| || ||| ||||||||| || ||||||||| |||||||| |||| |||| |
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| T |
22806027 |
cagatgataaaggcaattttagtaaccatgtcatgtgatgtttcttttagaaatgattcgtagctaagttatgttccaggacatttcttactaggaccca |
22805928 |
T |
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| Q |
192 |
aatt |
195 |
Q |
| |
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|||| |
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| T |
22805927 |
aatt |
22805924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 162
Target Start/End: Complemental strand, 22810343 - 22810292
Alignment:
| Q |
111 |
aatttaagaaaccttgtcaagtgatgtttctttcagtaataattcgtagcta |
162 |
Q |
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||||| || |||| ||||| ||||||||||||| |||||||||||||||||| |
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| T |
22810343 |
aattttagtaaccatgtcatgtgatgtttctttaagtaataattcgtagcta |
22810292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 24 - 65
Target Start/End: Complemental strand, 22842983 - 22842942
Alignment:
| Q |
24 |
cccactactacagatggaaagaaaatttgtgcttcgaatgtg |
65 |
Q |
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| T |
22842983 |
cccactactacagttggaaagaaaatttgtggttcaaatgtg |
22842942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 110 - 182
Target Start/End: Original strand, 21150029 - 21150101
Alignment:
| Q |
110 |
caatttaagaaaccttgtcaagtgatgtttctttcagtaataattcgtagctaggttccaggatatttcttag |
182 |
Q |
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|||||| || |||| ||||| ||||||||||||| |||||||||||||||||||||||| ||| ||||||||| |
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| T |
21150029 |
caattttagtaaccatgtcatgtgatgtttcttttagtaataattcgtagctaggttcccggacatttcttag |
21150101 |
T |
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