View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7763_high_2 (Length: 450)
Name: NF7763_high_2
Description: NF7763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7763_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 18 - 439
Target Start/End: Complemental strand, 41811019 - 41810598
Alignment:
| Q |
18 |
ttaagttgtgaagagttatgttggcatggcttttgcatagtaagggctacatatgcagcagcatttgatgcttacctctatgcacttggtcagcatgcaa |
117 |
Q |
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| T |
41811019 |
ttaagttgtgaagagttatgttggcatggcttttgcatagtaagggctacatatgcagcagcatttgatgcttacctctatgcacttggtcagcatgcaa |
41810920 |
T |
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| Q |
118 |
aactaacaggaaattttttcttggatttactagaatagagttttaaagacgagtgttctgatttctatatttctgatgctaggaataaattaggtaatat |
217 |
Q |
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| T |
41810919 |
aactaacaggaaattttttcttggagttactagaatagagttttaaagacgagtgttctgatttctatatttctgatgctaggaataaattaggtaatat |
41810820 |
T |
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| Q |
218 |
gttgagtttggctcatatattactaataagttgggttgcgcctgatccccatagtgcggctcagaggtaatgttgtaatctggatgatagtatttaaata |
317 |
Q |
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| T |
41810819 |
gttgagtttggctcatatattactaataagttgggttgcgcctgatccccatagtgcggctcagaggtaatgttgtaatctggatgatagtatttaaata |
41810720 |
T |
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| Q |
318 |
taagttgtatactgtaaaccctaatctttacctgatcatagaaaggaactgcaacaactcttaagtcacatacgtaggtatagttgatcaaatttcgcta |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||| |
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| T |
41810719 |
taagttgtatactgtaaaccctaatctttacctgatcatagaaaggaactgcaacaactcttaagtcacatatgtaggtatagttgaccaaacttcgcta |
41810620 |
T |
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| Q |
418 |
ccaaacattgtgtgtttctctg |
439 |
Q |
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| T |
41810619 |
ccaaacattgtgtgtttctctg |
41810598 |
T |
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Back To:
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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 287 - 370
Target Start/End: Complemental strand, 8467179 - 8467096
Alignment:
| Q |
287 |
atgttgtaatctggatgatagtatttaaatataagttgtatactgtaaaccctaatctttacctgatcatagaaaggaactgca |
370 |
Q |
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| T |
8467179 |
atgttgtaatcagaattgtagtatttaagtataagttgtgcactgtaaaccctaatctttcattgataatacaaaggaactgca |
8467096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 305 - 346
Target Start/End: Original strand, 14297992 - 14298033
Alignment:
| Q |
305 |
tagtatttaaatataagttgtatactgtaaaccctaatcttt |
346 |
Q |
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| T |
14297992 |
tagtatttaaatacaagttgtatactgtaaactctaatcttt |
14298033 |
T |
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