View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7763_high_7 (Length: 413)
Name: NF7763_high_7
Description: NF7763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7763_high_7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 1 - 407
Target Start/End: Original strand, 16694219 - 16694623
Alignment:
| Q |
1 |
cttggatgacaactttgcttcagttgtgaaggtagagtcctttgcgtttgggagatttaattcattcttaatgaatgatgagttagctcttcgtagcatc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
16694219 |
cttggatgacaactttgcttcagttgtgaaggtagagtcctttgcgtttgggagatttaattcattcttaatgaatgacgagttagctcttcgtagcatc |
16694318 |
T |
|
| Q |
101 |
ttgaaaagctatttatgttattactagaagtacaaacatagtttttcaatatcaactggaaatgaagggattgtttagtctgatgcgattacatatttgt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16694319 |
ttgaaaagctatttatgttattactagaagtacaaacatagtttttcaatatcaactggaaatgaagggattgtttagtctgatgcgattacatatttgt |
16694418 |
T |
|
| Q |
201 |
gtagttttggatatttggttaaattggtttataaactgatatttggtgcataactggaaccaattttcatgtctttatgcaaatttaggttgtcagatgg |
300 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
16694419 |
gtagttttggatatttggtt--attggtttataaactgatatttggtgcataactggcaacaattttcatgtctttctgcaaatttaggttgtcagatgg |
16694516 |
T |
|
| Q |
301 |
ggtcggtctgtttatgcgaatattcagaaatttatccagtttcagttgacagtcaatgtggcggctcttgttataaatgtggttgctgcagtttcctctg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16694517 |
ggtcggtctgtttatgcgaatattcagaaatttatccagtttcagttgacagtcaatgtggcggctcttgttataaatgtggttgctgcagtttcctctg |
16694616 |
T |
|
| Q |
401 |
gtgatgt |
407 |
Q |
| |
|
||||||| |
|
|
| T |
16694617 |
gtgatgt |
16694623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 286 - 380
Target Start/End: Original strand, 1446486 - 1446580
Alignment:
| Q |
286 |
taggttgtcagatggggtcggtctgtttatgcgaatattcagaaatttatccagtttcagttgacagtcaatgtggcggctcttgttataaatgt |
380 |
Q |
| |
|
||||||||| | ||||| || ||||| ||||| ||||||||||||||||||||||| ||| | || || || || || |||||||| |||||||| |
|
|
| T |
1446486 |
taggttgtccgctggggccgctctgtatatgcaaatattcagaaatttatccagttccagcttactgtgaacgttgctgctcttgtaataaatgt |
1446580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University