View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7763_high_9 (Length: 370)
Name: NF7763_high_9
Description: NF7763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7763_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 126 - 353
Target Start/End: Original strand, 31787979 - 31788206
Alignment:
| Q |
126 |
ttgtgtgcatcactttcaagccagtcttattataaatgtctcattataattaagttgtgttgatttcaatgataaaacgagtttctttactaaaacaacc |
225 |
Q |
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| T |
31787979 |
ttgtgtgcatcactttcaagccagtcttattataaatatctcattataattaagttgtgttgatttcaatgataaaatgagtttctttactaaaacaacc |
31788078 |
T |
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| Q |
226 |
ttattaatggcggtcactagcgtaattgatagtgtgttcgagatacaatgatatattattggaaaaaagtaaataatgtttcgttggtaatataaagaaa |
325 |
Q |
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| T |
31788079 |
ttattaatagcggtcactagcgtaattgatagtgtgttagagatacaatgatatattattggaaaaaagtaaataatgtttcgttggtaatataaagaaa |
31788178 |
T |
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| Q |
326 |
caaataatatgagacaagtaaatgtaac |
353 |
Q |
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| T |
31788179 |
caaataatataagacaagtaaatgtaac |
31788206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 50 - 144
Target Start/End: Original strand, 31792617 - 31792711
Alignment:
| Q |
50 |
gttctaaaataagtgttttactttcttaatacaacattagttaatttattttaactttacccccaatttaatagtattgtgtgcatcactttcaa |
144 |
Q |
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| T |
31792617 |
gttctaaaataagtgttttactttcttaatacaacataaattaatttattttaattttacccccaaattaatactattatgtgcatgactttcaa |
31792711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 288 - 348
Target Start/End: Original strand, 31793938 - 31793998
Alignment:
| Q |
288 |
aaaaaagtaaataatgtttcgttggtaatataaagaaacaaataatatgagacaagtaaat |
348 |
Q |
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| T |
31793938 |
aaaaaagtaactaatgtttcattgataatataaagaaacaaataatatgagacaagtaaat |
31793998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 208
Target Start/End: Complemental strand, 3098728 - 3098696
Alignment:
| Q |
176 |
taagttgtgttgatttcaatgataaaacgagtt |
208 |
Q |
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| T |
3098728 |
taagttttgttgatttcaatgataaaacgagtt |
3098696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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