View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7763_low_1 (Length: 700)
Name: NF7763_low_1
Description: NF7763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7763_low_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 387; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 19 - 436
Target Start/End: Original strand, 25339207 - 25339629
Alignment:
| Q |
19 |
aatgtagccacaattacggtcgtgaagccgttatattgtggctgttgttgcgattgtggactgcaatttaaaaccatgatggatattcaacaacgactta |
118 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
25339207 |
aatgtaaccacaattacggtcgtgaagccgttatattgtgactgttgttgcgattgtggactgcaatttaaaatcatgatggatattcaacaacgactta |
25339306 |
T |
|
| Q |
119 |
cataattgatatttatactcttaaaccaaagggatgaaaatggtttctaacatctagtttatgaattttagatggggttcatttagcaatggatttgaag |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25339307 |
cataattgatatttatactcttaaaccaaagggatgaaaatggtttctaacatctagtttatgaattttagatggggttcatttagcaatggatttgaag |
25339406 |
T |
|
| Q |
219 |
ggtatgaagaatttgatacaccagtagcatacaagttagctttgaagacttgggctaattgggttgactcaactattaatccaaacaaaacaagggtctt |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25339407 |
ggtatgaagaatttgatacaccagtagcatacaagttagctttgaagacttgggctaattgggttgactcaactattaatccaaacaaaacaagggtctt |
25339506 |
T |
|
| Q |
319 |
cttcactacaatgtcacctacacacacaaggtctttctctcttctaaatattttcttagcttaaataactttttagtccttataatata-----aattta |
413 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
25339507 |
cttcactacaatgtcacctacacacacaaggtctttctctcttctaaatattttcttggcttaaataactttttagtccttataatataaacttaattta |
25339606 |
T |
|
| Q |
414 |
gttttagtcttgcaaatatcaac |
436 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
25339607 |
gttttagtcttgcaaatatcaac |
25339629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 161; E-Value: 2e-85
Query Start/End: Original strand, 499 - 671
Target Start/End: Original strand, 25339692 - 25339864
Alignment:
| Q |
499 |
gatgagtaggaatcgtactcggtacctcaaagatttataatacacacatgcattgcgcaccaattacttgcattagacctaatggaagcgataaaagttt |
598 |
Q |
| |
|
||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
25339692 |
gatgagtagaaatcgtactcggtacctcagagatttataatacacacatgcattgcgcaccaatcacttgcattagacctaatggaagcgataaaagttt |
25339791 |
T |
|
| Q |
599 |
ttgttttaacaatgttggtccatgtagaaaattgcttacaaggactaaaagcaattatcaacgtgtcattgtc |
671 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25339792 |
ttgttttaacaatgttggtccatgtagaaaattgcttacaaggactaaaagcaattatcaacgtgtcattgtc |
25339864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 8e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 191 - 347
Target Start/End: Original strand, 5231866 - 5232022
Alignment:
| Q |
191 |
tggggttcatttagcaatggatttgaagggtatgaagaatttgatacaccagtagcatacaagttagctttgaagacttgggctaattgggttgactcaa |
290 |
Q |
| |
|
||||| ||||||||||||||| |||||||| |||||| |||||||| || | || ||||| |||| ||||| ||| ||||| |||||||| ||||||| |
|
|
| T |
5231866 |
tggggctcatttagcaatggagaagaagggtacgaagaacttgatacatcaattgcttacaacttaggtttgaggacatgggcaaattgggtggactcaa |
5231965 |
T |
|
| Q |
291 |
ctattaatccaaacaaaacaagggtcttcttcactacaatgtcacctacacacacaa |
347 |
Q |
| |
|
|||| |||||||||||||| || ||||||||||| || ||||| ||| |||| |||| |
|
|
| T |
5231966 |
ctatcaatccaaacaaaactagagtcttcttcacaactatgtcccctgcacatacaa |
5232022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University