View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7763_low_10 (Length: 426)
Name: NF7763_low_10
Description: NF7763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7763_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 243; Significance: 1e-134; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 149 - 410
Target Start/End: Complemental strand, 29229978 - 29229716
Alignment:
| Q |
149 |
atcatgtaacaaacttgtgattggaaggtgggaattttaaaacctcctctccgtatattatgattgctacgtaaatatcttccctcttcaattaaattaa |
248 |
Q |
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| T |
29229978 |
atcatgtaacaaacttgtgattggaaggtgggaattttaaaacctcctctccgtatattatgattgctacgtaaatatcttccctcttcaattaaattaa |
29229879 |
T |
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| Q |
249 |
attcattgttatcaatactcacacgagatgtacatacatgtgttagtttctgtattgattagttacaaaatcaaaagatcatgcaaatgaccttcagcct |
348 |
Q |
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| T |
29229878 |
attcattgttatcaatacccacacgagatgtacatacatgtgttagtttctgtattgattagttacaaaatcaagagatcatgcaaatgaccttcagcct |
29229779 |
T |
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| Q |
349 |
atattctcaaggtattacggtattcactttgtt-ttttaattgaataataatagcaataatct |
410 |
Q |
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| T |
29229778 |
atattctcaaggtattacggtattcactttgtttttttaattgaataataatagtaataatct |
29229716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 29230109 - 29230061
Alignment:
| Q |
18 |
tgtgtgtatgactcagattgaccttatttttctccatatggttgttaac |
66 |
Q |
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| T |
29230109 |
tgtgtgtgtgactcagattgaccttatttttctccatatggttgttaac |
29230061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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