View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7763_low_11 (Length: 426)

Name: NF7763_low_11
Description: NF7763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7763_low_11
NF7763_low_11
[»] chr4 (36 HSPs)
chr4 (1-411)||(29437623-29438038)
chr4 (1-192)||(19602200-19602392)
chr4 (20-165)||(26160265-26160410)
chr4 (3-165)||(33519483-33519645)
chr4 (73-165)||(31859452-31859546)
chr4 (269-403)||(31859711-31859855)
chr4 (1-163)||(4733157-4733319)
chr4 (7-186)||(13066160-13066342)
chr4 (1-83)||(10576993-10577074)
chr4 (69-165)||(22120115-22120212)
chr4 (115-220)||(10576867-10576974)
chr4 (26-165)||(23354039-23354178)
chr4 (269-360)||(20985203-20985294)
chr4 (289-411)||(23353774-23353902)
chr4 (274-365)||(33519238-33519329)
chr4 (308-410)||(17187326-17187438)
chr4 (1-41)||(1695402-1695442)
chr4 (1-212)||(7023726-7023937)
chr4 (98-165)||(12028484-12028552)
chr4 (359-411)||(13064578-13064630)
chr4 (1-87)||(15192762-15192843)
chr4 (356-411)||(7024126-7024181)
chr4 (1-90)||(18444733-18444821)
chr4 (360-411)||(9288362-9288413)
chr4 (357-411)||(15192356-15192409)
chr4 (56-165)||(21077722-21077831)
chr4 (1-43)||(25314741-25314783)
chr4 (361-411)||(26159908-26159958)
chr4 (1-87)||(26188283-26188367)
chr4 (357-411)||(34864204-34864257)
chr4 (362-411)||(18444402-18444451)
chr4 (1-38)||(47024250-47024287)
chr4 (1-89)||(5676720-5676807)
chr4 (375-411)||(19601951-19601987)
chr4 (300-360)||(21077446-21077506)
chr4 (1-140)||(39134287-39134426)
[»] chr2 (25 HSPs)
chr2 (1-410)||(14921587-14922000)
chr2 (1-204)||(25460338-25460536)
chr2 (5-179)||(24188450-24188620)
chr2 (1-165)||(18819131-18819295)
chr2 (40-191)||(27917560-27917712)
chr2 (242-360)||(34063625-34063742)
chr2 (1-165)||(18235810-18235987)
chr2 (1-163)||(17884063-17884224)
chr2 (79-155)||(39732119-39732196)
chr2 (55-165)||(24047785-24047895)
chr2 (8-165)||(21844328-21844485)
chr2 (253-411)||(17414958-17415125)
chr2 (67-163)||(17862842-17862938)
chr2 (241-365)||(18818910-18819033)
chr2 (80-163)||(31262413-31262497)
chr2 (10-59)||(9504471-9504520)
chr2 (10-59)||(9515837-9515886)
chr2 (1-165)||(21842694-21842858)
chr2 (289-411)||(19541189-19541320)
chr2 (72-165)||(15454070-15454163)
chr2 (1-38)||(30999348-30999385)
chr2 (1-52)||(27416759-27416810)
chr2 (322-360)||(16593614-16593652)
chr2 (69-137)||(21848035-21848104)
chr2 (319-356)||(27417123-27417160)
[»] chr7 (37 HSPs)
chr7 (1-248)||(24596494-24596742)
chr7 (5-191)||(9552570-9552758)
chr7 (9-191)||(9800966-9801150)
chr7 (58-205)||(4829239-4829387)
chr7 (5-191)||(9760524-9760712)
chr7 (8-165)||(5636657-5636814)
chr7 (134-249)||(8606224-8606338)
chr7 (1-212)||(5312277-5312500)
chr7 (9-165)||(22334791-22334948)
chr7 (56-236)||(30405952-30406134)
chr7 (256-359)||(3487164-3487266)
chr7 (269-411)||(24596815-24596966)
chr7 (1-155)||(4091986-4092140)
chr7 (356-411)||(23125053-23125108)
chr7 (358-412)||(21545736-21545790)
chr7 (1-41)||(7777591-7777631)
chr7 (357-408)||(30405749-30405800)
chr7 (1-95)||(20017506-20017597)
chr7 (357-411)||(7494849-7494902)
chr7 (361-411)||(9761328-9761377)
chr7 (1-43)||(18468221-18468263)
chr7 (375-411)||(4977746-4977782)
chr7 (1-45)||(21545354-21545398)
chr7 (322-411)||(29544672-29544771)
chr7 (2-33)||(7493862-7493893)
chr7 (107-165)||(3268533-3268591)
chr7 (322-360)||(20017166-20017204)
chr7 (40-106)||(21537083-21537149)
chr7 (319-360)||(4829001-4829042)
chr7 (323-360)||(7815536-7815573)
chr7 (1-38)||(7815886-7815923)
chr7 (1-38)||(9071002-9071039)
chr7 (361-410)||(9801787-9801835)
chr7 (11-96)||(17880451-17880535)
chr7 (1-38)||(21472359-21472396)
chr7 (357-397)||(12358671-12358711)
chr7 (375-411)||(20461574-20461610)
[»] chr3 (30 HSPs)
chr3 (1-217)||(26298177-26298394)
chr3 (4-207)||(18474610-18474816)
chr3 (7-192)||(19542596-19542783)
chr3 (8-223)||(20892054-20892272)
chr3 (1-186)||(11475287-11475472)
chr3 (10-159)||(21828709-21828858)
chr3 (39-153)||(22489614-22489729)
chr3 (25-165)||(22992206-22992347)
chr3 (5-165)||(10342207-10342368)
chr3 (40-165)||(19285549-19285673)
chr3 (308-411)||(19542973-19543086)
chr3 (55-165)||(33578208-33578318)
chr3 (357-411)||(19219119-19219173)
chr3 (55-214)||(26387355-26387517)
chr3 (369-410)||(28422606-28422647)
chr3 (4-52)||(14280791-14280839)
chr3 (245-336)||(26297978-26298069)
chr3 (284-357)||(27374274-27374347)
chr3 (1-65)||(8401903-8401967)
chr3 (375-411)||(8402478-8402514)
chr3 (320-360)||(18474383-18474423)
chr3 (357-409)||(19263815-19263867)
chr3 (1-48)||(22488367-22488414)
chr3 (376-411)||(26297899-26297934)
chr3 (175-221)||(22493445-22493491)
chr3 (107-165)||(22991074-22991132)
chr3 (322-360)||(25883316-25883354)
chr3 (1-38)||(13911871-13911908)
chr3 (300-360)||(8402392-8402452)
chr3 (316-360)||(19219068-19219112)
[»] chr1 (27 HSPs)
chr1 (1-208)||(21549058-21549265)
chr1 (1-208)||(52270720-52270935)
chr1 (240-403)||(26854102-26854274)
chr1 (1-204)||(25778148-25778352)
chr1 (1-209)||(23506183-23506392)
chr1 (11-192)||(25665296-25665480)
chr1 (55-217)||(26853873-26854036)
chr1 (1-156)||(25730937-25731093)
chr1 (1-165)||(34533082-34533246)
chr1 (240-406)||(52271027-52271202)
chr1 (1-158)||(31314004-31314161)
chr1 (69-165)||(27460443-27460540)
chr1 (1-86)||(50047619-50047703)
chr1 (279-359)||(25665590-25665670)
chr1 (289-360)||(23505969-23506040)
chr1 (1-108)||(26658002-26658104)
chr1 (248-411)||(21548800-21548974)
chr1 (1-51)||(30675992-30676042)
chr1 (1-166)||(14744944-14745102)
chr1 (69-165)||(25126900-25126997)
chr1 (1-59)||(11769500-11769558)
chr1 (322-360)||(11769857-11769895)
chr1 (357-411)||(18300911-18300965)
chr1 (308-411)||(19257655-19257766)
chr1 (1-106)||(23223890-23223992)
chr1 (308-411)||(25126632-25126745)
chr1 (5-41)||(12810735-12810771)
[»] chr8 (30 HSPs)
chr8 (3-214)||(11437801-11438013)
chr8 (1-208)||(18771340-18771548)
chr8 (1-182)||(30850552-30850731)
chr8 (240-400)||(11437583-11437753)
chr8 (29-174)||(30544171-30544319)
chr8 (1-212)||(24927354-24927565)
chr8 (247-411)||(13583304-13583482)
chr8 (1-106)||(13583111-13583216)
chr8 (240-408)||(30543916-30544095)
chr8 (55-174)||(18786125-18786245)
chr8 (1-89)||(14184463-14184553)
chr8 (18-105)||(29292366-29292453)
chr8 (268-403)||(5153918-5154063)
chr8 (10-161)||(28074945-28075096)
chr8 (5-87)||(22892743-22892821)
chr8 (357-408)||(29291925-29291976)
chr8 (1-163)||(23876395-23876560)
chr8 (357-411)||(28292009-28292063)
chr8 (276-411)||(32239440-32239585)
chr8 (69-165)||(5569737-5569833)
chr8 (319-360)||(22894392-22894433)
chr8 (361-409)||(6888105-6888153)
chr8 (10-165)||(24120711-24120866)
chr8 (126-165)||(6887828-6887867)
chr8 (303-403)||(30850944-30851054)
chr8 (1-102)||(23893615-23893713)
chr8 (300-393)||(31436643-31436742)
chr8 (1-38)||(13304978-13305015)
chr8 (97-212)||(14184326-14184443)
chr8 (1-49)||(12957076-12957124)
[»] chr5 (35 HSPs)
chr5 (5-174)||(18281714-18281884)
chr5 (54-226)||(23157337-23157510)
chr5 (1-164)||(16622137-16622300)
chr5 (115-237)||(25368017-25368140)
chr5 (1-182)||(18178575-18178754)
chr5 (1-165)||(7742384-7742548)
chr5 (6-153)||(19763395-19763542)
chr5 (5-184)||(20083929-20084108)
chr5 (1-158)||(20695088-20695245)
chr5 (269-409)||(19331664-19331814)
chr5 (240-359)||(23157585-23157704)
chr5 (1-90)||(22930492-22930580)
chr5 (67-165)||(25681049-25681148)
chr5 (1-96)||(25594152-25594246)
chr5 (314-360)||(18872907-18872953)
chr5 (1-102)||(26329554-26329651)
chr5 (4-187)||(30791045-30791226)
chr5 (78-165)||(17695027-17695115)
chr5 (1-154)||(31340850-31341001)
chr5 (357-411)||(11274238-11274292)
chr5 (11-65)||(22643454-22643508)
chr5 (357-410)||(7742778-7742831)
chr5 (322-411)||(26329933-26330031)
chr5 (1-52)||(17381503-17381554)
chr5 (289-360)||(19763716-19763787)
chr5 (1-35)||(18451732-18451766)
chr5 (126-248)||(24410546-24410665)
chr5 (361-411)||(24410842-24410892)
chr5 (1-38)||(12265103-12265140)
chr5 (357-402)||(18178263-18178308)
chr5 (1-38)||(24268670-24268707)
chr5 (1-38)||(24345300-24345337)
chr5 (79-139)||(24846613-24846674)
chr5 (375-411)||(26070626-26070662)
chr5 (323-359)||(30072330-30072366)
[»] scaffold0065 (2 HSPs)
scaffold0065 (5-206)||(12682-12891)
scaffold0065 (279-360)||(12457-12538)
[»] chr6 (28 HSPs)
chr6 (1-161)||(22262835-22262995)
chr6 (55-165)||(9396154-9396264)
chr6 (1-151)||(16528117-16528267)
chr6 (10-138)||(13830414-13830542)
chr6 (266-406)||(26499655-26499804)
chr6 (4-106)||(26499356-26499457)
chr6 (84-249)||(28178365-28178531)
chr6 (73-144)||(10976638-10976710)
chr6 (76-183)||(17198379-17198487)
chr6 (1-88)||(15382214-15382303)
chr6 (357-407)||(30355473-30355523)
chr6 (107-212)||(15318459-15318564)
chr6 (69-165)||(32930036-32930133)
chr6 (107-162)||(12971956-12972011)
chr6 (1-36)||(30235867-30235902)
chr6 (279-360)||(24507263-24507344)
chr6 (1-88)||(15318596-15318683)
chr6 (1-88)||(15375965-15376052)
chr6 (289-356)||(17198652-17198719)
chr6 (361-408)||(33638417-33638464)
chr6 (357-411)||(12972293-12972347)
chr6 (122-212)||(15349108-15349198)
chr6 (107-181)||(15369135-15369209)
chr6 (322-360)||(15575137-15575175)
chr6 (1-74)||(15349259-15349332)
chr6 (120-183)||(15375857-15375920)
chr6 (322-358)||(17860312-17860348)
chr6 (375-411)||(24507368-24507404)
[»] scaffold0337 (3 HSPs)
scaffold0337 (5-183)||(3573-3758)
scaffold0337 (279-360)||(2021-2102)
scaffold0337 (375-411)||(1961-1997)
[»] scaffold0190 (2 HSPs)
scaffold0190 (1-191)||(11165-11355)
scaffold0190 (308-360)||(11548-11599)
[»] scaffold0011 (3 HSPs)
scaffold0011 (241-360)||(227969-228088)
scaffold0011 (162-249)||(227818-227905)
scaffold0011 (1-51)||(227697-227747)
[»] scaffold0386 (2 HSPs)
scaffold0386 (1-165)||(8229-8393)
scaffold0386 (1-165)||(11259-11423)
[»] scaffold1149 (2 HSPs)
scaffold1149 (280-360)||(2000-2080)
scaffold1149 (118-175)||(2246-2301)
[»] scaffold0650 (2 HSPs)
scaffold0650 (1-87)||(5234-5316)
scaffold0650 (357-411)||(5678-5731)
[»] scaffold0188 (1 HSPs)
scaffold0188 (358-411)||(26864-26917)
[»] scaffold0185 (1 HSPs)
scaffold0185 (269-360)||(2713-2804)
[»] scaffold0362 (1 HSPs)
scaffold0362 (1-38)||(8236-8273)
[»] scaffold0043 (2 HSPs)
scaffold0043 (368-412)||(58897-58941)
scaffold0043 (284-360)||(58963-59038)
[»] scaffold0836 (1 HSPs)
scaffold0836 (295-357)||(2824-2886)
[»] scaffold0171 (1 HSPs)
scaffold0171 (357-411)||(21550-21604)
[»] scaffold0100 (1 HSPs)
scaffold0100 (1-34)||(37568-37601)


Alignment Details
Target: chr4 (Bit Score: 351; Significance: 0; HSPs: 36)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 1 - 411
Target Start/End: Complemental strand, 29438038 - 29437623
Alignment:
Q  1 aaacaatagaaaaacataccctagagagaacaagagaatgatggagatcctcgtccttgaagctcttaatgcttgacccttgccttgtaccactagtttt 100  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29438038 aaacaatagaaaaacataccctagagataacaagagaatgatggagatcctcgtccttgaagctcttaatgcttgacccttgccttgtaccactagtttt 29437939  T
Q  101 ctgaat-aatacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaagagagtgaaaatagggtttttccaccaaaaacggcttg 199  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29437938 ctgaatgaatacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaagagagtgaaaatagggtttttccaccaaaaacggcttg 29437839  T
Q  200 gaaaacaagcaaacatcacttcctccctgt----gtccatgcgtggggcgcatgaggcatcccctcttgcgcaaattctgcagttttcgaccatttttca 295  Q
    |||||||||||||| |||||||||||| ||    |||||||||||||||||||||||||||||||| ||| |||||||| ||||||| ||||||||||||    
T  29437838 gaaaacaagcaaacgtcacttcctccccgtccgtgtccatgcgtggggcgcatgaggcatcccctcctgcacaaattctacagtttttgaccatttttca 29437739  T
Q  296 agcgttcttctatcttgcgatgtcttggaacttcaaatgaagtttcttcactttgtattgtcttctaagaactattgaacttcaatcttcatatcctcga 395  Q
    ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  29437738 agcgttcttctgtcttgcgatgccttggaacttcaaatgaagtttcttcactttgtattgtcttctaagaaccattgaacttcaatcttcatatcctcga 29437639  T
Q  396 tccttcacgtgatgtc 411  Q
    ||||||||||||||||    
T  29437638 tccttcacgtgatgtc 29437623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 19602392 - 19602200
Alignment:
Q  1 aaacaatagaaaaacataccctagagagaacaagagaatgatggagatcctcgtccttgaagctcttaatgcttgacccttgccttgtaccactagtttt 100  Q
    |||||||||||||||||||||| |||| ||||| || ||||| || ||||||  ||||||||||| | ||||||| ||||||||||||||| |||| |||    
T  19602392 aaacaatagaaaaacataccctcgagataacaaaaggatgatagaaatcctctgccttgaagctcctgatgcttggcccttgccttgtaccgctagcttt 19602293  T
Q  101 ctgaat-aatacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaagagagtgaaaatagggtttttccaccaaaaa 192  Q
    |||||| || | |||||||| |||| ||||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||||    
T  19602292 ctgaatgaaaaaaagagtgtacaagggtctctatttataatgcatgattacttcggggttaagagagtgaaaataggggttttccaccaaaaa 19602200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 20 - 165
Target Start/End: Complemental strand, 26160410 - 26160265
Alignment:
Q  20 cctagagagaacaagagaatgatggagatcctcgtccttgaagctcttaatgcttgacccttgccttgtaccactagttttctgaat-aatacaagagtg 118  Q
    ||||||||||||||||| | |||| ||||| ||   ||||||||||||| |||| || ||||| |||||||| |||| ||||||||| |||| |||||||    
T  26160410 cctagagagaacaagaggaggatgtagatcatctgacttgaagctctta-tgctagatccttgtcttgtaccgctagctttctgaatgaataaaagagtg 26160312  T
Q  119 tgcaagagtctctatttatagtgcatgattacttaggggttaagaga 165  Q
    ||||||||||||||||||||| |||| |||||||| |||||||||||    
T  26160311 tgcaagagtctctatttatagggcataattacttatgggttaagaga 26160265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 3 - 165
Target Start/End: Complemental strand, 33519645 - 33519483
Alignment:
Q  3 acaatagaaaaacataccctagagagaacaagagaatgatggagatcctcgtccttgaagctcttaatgcttgacccttgccttgtaccactagttttct 102  Q
    |||||||||||| |||||| ||||||||||| || ||||| || ||| |   |||||||||||| | || |||||||||||||| |||  |||| |||||    
T  33519645 acaatagaaaaatatacccaagagagaacaaaaggatgatagatatcttttgccttgaagctctga-tgtttgacccttgccttatactgctagatttct 33519547  T
Q  103 gaat-aatacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaagaga 165  Q
    |||| |||| ||||||||||||| |||| ||||||||||  || |||| |||||||||| ||||    
T  33519546 gaatgaataaaagagtgtgcaagggtctttatttatagtatatcattaattaggggttacgaga 33519483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 73 - 165
Target Start/End: Original strand, 31859452 - 31859546
Alignment:
Q  73 ttgacccttgccttgtaccactagttttctgaat-aatacaagagtgtgcaagagtctctatttata-gtgcatgattacttaggggttaagaga 165  Q
    ||||||| ||||||||||  |||||||||||||| |||| ||||||||||||| ||||||| ||||| |||||| ||||||||||||||||||||    
T  31859452 ttgacccctgccttgtacatctagttttctgaatgaataaaagagtgtgcaagggtctctacttataagtgcatcattacttaggggttaagaga 31859546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 269 - 403
Target Start/End: Original strand, 31859711 - 31859855
Alignment:
Q  269 aattctgcagttttcgaccatttttcaagcgttcttctatcttgcgatgtcttggaacttcaaatgaagtttcttcactttgtattgt----------ct 358  Q
    |||| ||||||||||| || ||||||| |||||||||  |||||  ||| |||||||||| |||| || |||||||||||||||||||          ||    
T  31859711 aattttgcagttttcgtccttttttcacgcgttcttccgtcttgaaatgccttggaacttgaaataaattttcttcactttgtattgtcttcaaatacct 31859810  T
Q  359 tctaagaactattgaacttcaatcttcatatcctcgatccttcac 403  Q
    ||||||||| ||||| ||||||| |||||||||||||||||||||    
T  31859811 tctaagaaccattgatcttcaatattcatatcctcgatccttcac 31859855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 4733319 - 4733157
Alignment:
Q  1 aaacaatagaaaaacataccctagagagaacaagagaatgatggagatcctcgtccttgaagctcttaatgcttgacccttgccttgtaccactagtttt 100  Q
    |||||||||||||||||||| |||| ||||||| |  | |||||||||| ||  ||||||||||| ||| | |||||||||| ||||||| | ||| |||    
T  4733319 aaacaatagaaaaacataccttagaaagaacaacaagaggatggagatcatctgccttgaagctc-taacgtttgacccttgtcttgtactagtagcttt 4733221  T
Q  101 ctgaat-aatacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaaga 163  Q
    |||| | |||| || ||||| |||| || |||||||||||| ||| |||| ||||| |||||||    
T  4733220 ctgattgaataaaacagtgtccaagggtttctatttatagtacatcattatttaggtgttaaga 4733157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 7 - 186
Target Start/End: Complemental strand, 13066342 - 13066160
Alignment:
Q  7 tagaaaaacataccctagagagaacaagagaatgatggagatcctcgtccttgaagctc-ttaatgcttgacccttgccttgtaccactagttttctgaa 105  Q
    ||||||||||||||||||| ||||||| |  | ||||||||||||   |||||||| || || ||  ||||| |||||||| |||| |||  ||||||||    
T  13066342 tagaaaaacataccctagaaagaacaaaacgaggatggagatcctatgccttgaagatccttgatatttgactcttgccttataccgctaactttctgaa 13066243  T
Q  106 t-aatacaagagtgtgcaagagtctctatttatagtgcatgattacttagg-ggttaagagagtgaaaatagggtttttccac 186  Q
    | |||| || |||  |||||||||||||||||||||  |||||||||| || || ||||||||  ||||||| ||||||||||    
T  13066242 tgaataaaatagtacgcaagagtctctatttatagtttatgattactttggcgggtaagagaggtaaaatagagtttttccac 13066160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 10577074 - 10576993
Alignment:
Q  1 aaacaatagaaaaacataccctagagagaacaagagaatgatggagatcctcgtccttgaagctcttaatgcttgacccttgc 83  Q
    |||||||| ||||||||||||||||||| ||||||| | || |||||||||| ||||| |||||| | |||||||||||||||    
T  10577074 aaacaatataaaaacataccctagagaggacaagaggaggagggagatcctcttccttcaagctc-tgatgcttgacccttgc 10576993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 69 - 165
Target Start/End: Complemental strand, 22120212 - 22120115
Alignment:
Q  69 atgcttgacccttgccttgtaccactagttttctgaat-aatacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaagaga 165  Q
    ||||||||||||||||||||||  ||||| |||||||| |||| | | ||||||||| ||||||||||   || ||| ||||||||||||||||||||    
T  22120212 atgcttgacccttgccttgtacagctagtattctgaatgaataaatgtgtgtgcaagggtctctattttgggtacatcattacttaggggttaagaga 22120115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 115 - 220
Target Start/End: Complemental strand, 10576974 - 10576867
Alignment:
Q  115 agtgtgcaagagtctctatttatagtgcatgattacttaggggttaagagagtgaaaatagggtttttccacca--aaaacggcttggaaaacaagcaaa 212  Q
    |||||||||| ||||||||||||||||||| | |||||| |||||||||||   ||||| || |||| || |||  ||| | ||||||||||||||||||    
T  10576974 agtgtgcaagggtctctatttatagtgcataaatacttacgggttaagagaagaaaaatgggattttccccccaccaaatcagcttggaaaacaagcaaa 10576875  T
Q  213 catcactt 220  Q
    || |||||    
T  10576874 caacactt 10576867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 26 - 165
Target Start/End: Complemental strand, 23354178 - 23354039
Alignment:
Q  26 gagaacaagagaatgatggagatcctcgtccttgaagctcttaatgcttgacccttgccttgtaccactagttttctgaat-aatacaagagtgtgcaag 124  Q
    ||||||||||  | |||||||||||||  | |||||||||| | || |||||| |||||||||||   | | ||||||||| |||| |||||| ||| ||    
T  23354178 gagaacaagatgaggatggagatcctctgctttgaagctctga-tgtttgacctttgccttgtactgttggctttctgaatgaataaaagagtttgcgag 23354080  T
Q  125 agtctctatttatagtgcatgattacttaggggttaagaga 165  Q
    ||||| |||||||| | ||| ||||||||||||||||||||    
T  23354079 agtctttatttataatacatcattacttaggggttaagaga 23354039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 269 - 360
Target Start/End: Original strand, 20985203 - 20985294
Alignment:
Q  269 aattctgcagttttcgaccatttttcaagcgttcttctatcttgcgatgtcttggaacttcaaatgaagtttcttcactttgtattgtcttc 360  Q
    ||||||||| |||||||||  |||||||||||| |||  || |||  ||||||| || |||||||||  |||||||||||||||||||||||    
T  20985203 aattctgcaattttcgacccattttcaagcgtttttccgtcatgcattgtcttgaaatttcaaatgagttttcttcactttgtattgtcttc 20985294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 289 - 411
Target Start/End: Complemental strand, 23353902 - 23353774
Alignment:
Q  289 tttttcaagcgttcttctatcttgcgatgtcttggaacttcaaatgaagtttcttcactttgtattgtcttctaag-------aactattgaacttcaat 381  Q
    |||||| |||||| |||| | |||| ||| |||||||||| ||||||| ||||||||||||||||||||||  |||       ||||||||| ||| |||    
T  23353902 tttttcgagcgtttttctgttttgcaatgccttggaacttgaaatgaattttcttcactttgtattgtcttaaaagaccttctaactattgatctttaat 23353803  T
Q  382 cttcatatcctcgatccttcacgtgatgtc 411  Q
    ||||||||||| | ||||||| ||||||||    
T  23353802 cttcatatccttg-tccttcatgtgatgtc 23353774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 274 - 365
Target Start/End: Complemental strand, 33519329 - 33519238
Alignment:
Q  274 tgcagttttcgaccatttttcaagcgttcttctatcttgcgatgtcttggaacttcaaatgaagtttcttcactttgtattgtcttctaaga 365  Q
    |||| |||||| ||||||||||||||||||||| ||| |  ||| ||||||| || ||||||| ||||||||  ||||||||||||| ||||    
T  33519329 tgcaattttcgtccatttttcaagcgttcttctgtctggaaatgccttggaatttgaaatgaattttcttcaacttgtattgtcttcaaaga 33519238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 308 - 410
Target Start/End: Complemental strand, 17187438 - 17187326
Alignment:
Q  308 tcttgcgatgtcttggaacttcaaatgaagtttcttcactttgtattgtcttc----------taagaactattgaacttcaatcttcatatcctcgatc 397  Q
    |||||| |||||||| ||||| ||||||| |||||| ||||||||||||||||          ||||||| | ||||||||||||||||||||||| |||    
T  17187438 tcttgcaatgtcttgaaacttgaaatgaattttctttactttgtattgtcttcaaataacttctaagaaccactgaacttcaatcttcatatcctcaatc 17187339  T
Q  398 cttcacgtgatgt 410  Q
     ||||| ||||||    
T  17187338 attcacttgatgt 17187326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 1695402 - 1695442
Alignment:
Q  1 aaacaatagaaaaacataccctagagagaacaagagaatga 41  Q
    |||||||||||||||||||||| ||||||||||||||||||    
T  1695402 aaacaatagaaaaacataccctcgagagaacaagagaatga 1695442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 7023726 - 7023937
Alignment:
Q  1 aaacaatagaaaaacataccctagagagaacaagagaatgatggagatcctcgtccttgaagctcttaatgcttgacccttgccttgtaccactagtttt 100  Q
    |||||| | |||||||||| ||||||| ||| | || | |||||||||| ||  || |||||||| |  | |||||||||| |||||||   |||  |||    
T  7023726 aaacaacataaaaacatacactagagaaaacgaaaggaggatggagatcatctgccatgaagctcctggtacttgaccctttccttgtattgctaacttt 7023825  T
Q  101 ctgaat-aatacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaagagagtgaaaatagggtttttccaccaaaaacggcttg 199  Q
    || ||| |||| ||| ||||||||  |||||||||| |||||||| | | | |||||||| ||||| ||||| |  || |||||||| |||||  |||||    
T  7023826 ctcaatgaataaaagcgtgtgcaatggtctctatttttagtgcatcactgcataggggtttagaga-tgaaatttaggattttccactaaaaatagcttg 7023924  T
Q  200 gaaaacaagcaaa 212  Q
    |||||||||||||    
T  7023925 gaaaacaagcaaa 7023937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 98 - 165
Target Start/End: Original strand, 12028484 - 12028552
Alignment:
Q  98 tttctgaat-aatacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaagaga 165  Q
    ||||||||| |||| |||||||||||||||||||||||||||||||||  ||||||  | |||||||||    
T  12028484 tttctgaatgaataaaagagtgtgcaagagtctctatttatagtgcatctttacttgtgagttaagaga 12028552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 359 - 411
Target Start/End: Complemental strand, 13064630 - 13064578
Alignment:
Q  359 tctaagaactattgaacttcaatcttcatatcctcgatccttcacgtgatgtc 411  Q
    ||||||||| |||||||||||||| || |||||| ||||||||||||||||||    
T  13064630 tctaagaaccattgaacttcaatcgtcttatccttgatccttcacgtgatgtc 13064578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 15192843 - 15192762
Alignment:
Q  1 aaacaatagaaaaacataccctagagagaacaagagaatgatggagatcctcgtccttgaagctcttaatgcttgacccttgccttg 87  Q
    |||||||||||||||| ||||| ||||||||||||||| || |   |||||  |||||||||||| |||||||||||||||||||||    
T  15192843 aaacaatagaaaaacacaccctggagagaacaagagaacgaag--aatcct--tccttgaagctc-taatgcttgacccttgccttg 15192762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 356 - 411
Target Start/End: Original strand, 7024126 - 7024181
Alignment:
Q  356 tcttctaagaactattgaacttcaatcttcatatcctcgatccttcacgtgatgtc 411  Q
    |||||||||||| ||||  |||||||||||||||| | ||||||||||||||||||    
T  7024126 tcttctaagaaccattggtcttcaatcttcatatctttgatccttcacgtgatgtc 7024181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 18444821 - 18444733
Alignment:
Q  1 aaacaatagaaaaacataccctagagagaacaagagaatgatggagatcctcgtccttgaagctcttaatgcttgacccttgccttgtac 90  Q
    |||||| | ||||||||||||||  ||||||||||| | |||||||||||||  ||||||| ||| | || |||||||||| ||||||||    
T  18444821 aaacaacataaaaacataccctaatgagaacaagaggaggatggagatcctccgccttgaaactc-tgattcttgaccctttccttgtac 18444733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 360 - 411
Target Start/End: Complemental strand, 9288413 - 9288362
Alignment:
Q  360 ctaagaactattgaacttcaatcttcatatcctcgatccttcacgtgatgtc 411  Q
    |||||||| ||||  |||||||||||||||||| |||||||||| |||||||    
T  9288413 ctaagaaccattggtcttcaatcttcatatccttgatccttcacttgatgtc 9288362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 357 - 411
Target Start/End: Complemental strand, 15192409 - 15192356
Alignment:
Q  357 cttctaagaactattgaacttcaatcttcatatcctcgatccttcacgtgatgtc 411  Q
    ||||||||||| ||||  ||||||| |||||||||| ||||||||||||||||||    
T  15192409 cttctaagaaccattggtcttcaat-ttcatatccttgatccttcacgtgatgtc 15192356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 56 - 165
Target Start/End: Complemental strand, 21077831 - 21077722
Alignment:
Q  56 cttgaagctcttaatgcttgacccttgccttgtaccactagttttctgaat-aatacaagagtgtgcaagagtctctatttatagtgcatgattacttag 154  Q
    ||||||||||| | || ||||||||| ||||||| | |||| ||| ||||| ||||  | ||||  |||| |||||||||||||||  || |||||||||    
T  21077831 cttgaagctctga-tgattgacccttaccttgtatcgctagctttttgaatgaataagatagtggacaagggtctctatttatagtagatcattacttag 21077733  T
Q  155 gggttaagaga 165  Q
    |||||||||||    
T  21077732 gggttaagaga 21077722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 25314741 - 25314783
Alignment:
Q  1 aaacaatagaaaaacataccctagagagaacaagagaatgatg 43  Q
    ||||||||||||||||||||||||| ||||||| | |||||||    
T  25314741 aaacaatagaaaaacataccctagacagaacaataaaatgatg 25314783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 361 - 411
Target Start/End: Complemental strand, 26159958 - 26159908
Alignment:
Q  361 taagaactattgaacttcaatcttcatatcctcgatccttcacgtgatgtc 411  Q
    ||||||| ||||| ||||||||||||||||||  ||||||||| |||||||    
T  26159958 taagaaccattgatcttcaatcttcatatcctgaatccttcacatgatgtc 26159908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 26188367 - 26188283
Alignment:
Q  1 aaacaatagaaaaacataccctagagagaacaagagaatgatggagatcctcgtccttgaagctcttaatgcttgacccttgccttg 87  Q
    ||||||||||||| ||||||||| |||||||||||| | |||| ||||||||  ||||| | ||| | ||||||||| |||||||||    
T  26188367 aaacaatagaaaa-cataccctatagagaacaagaggaggatgaagatcctctgccttggaactc-tgatgcttgactcttgccttg 26188283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 357 - 411
Target Start/End: Original strand, 34864204 - 34864257
Alignment:
Q  357 cttctaagaactattgaacttcaatcttcatatcctcgatccttcacgtgatgtc 411  Q
    ||||||||||| ||||| ||||||||| |||||| | ||||||||||||||||||    
T  34864204 cttctaagaaccattga-cttcaatctccatatctttgatccttcacgtgatgtc 34864257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 362 - 411
Target Start/End: Complemental strand, 18444451 - 18444402
Alignment:
Q  362 aagaactattgaacttcaatcttcatatcctcgatccttcacgtgatgtc 411  Q
    |||||| ||||| ||||||||||  |||| ||||||||||||||||||||    
T  18444451 aagaaccattgatcttcaatctttgtatcatcgatccttcacgtgatgtc 18444402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 47024250 - 47024287
Alignment:
Q  1 aaacaatagaaaaacataccctagagagaacaagagaa 38  Q
    |||||||||||||| ||||| |||||||||||||||||    
T  47024250 aaacaatagaaaaatataccttagagagaacaagagaa 47024287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 5676807 - 5676720
Alignment:
Q  1 aaacaatagaaaaacataccctagagagaacaagagaatgatggagatcctcgtccttgaagctcttaatgcttgacccttgccttgta 89  Q
    |||||||||||||||||||| |||| |||||||||| | |||| | ||  ||  ||||||| ||| | ||||||| |||||||||||||    
T  5676807 aaacaatagaaaaacataccatagaaagaacaagaggaggatgaaaattatctaccttgaaactc-tgatgcttggcccttgccttgta 5676720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 375 - 411
Target Start/End: Complemental strand, 19601987 - 19601951
Alignment:
Q  375 cttcaatcttcatatcctcgatccttcacgtgatgtc 411  Q
    |||||||| |||||||||||||| |||||||||||||    
T  19601987 cttcaatcatcatatcctcgatctttcacgtgatgtc 19601951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 300 - 360
Target Start/End: Complemental strand, 21077506 - 21077446
Alignment:
Q  300 ttcttctatcttgcgatgtcttggaacttcaaatgaagtttcttcactttgtattgtcttc 360  Q
    |||||| ||||| | ||| |||||||||| ||||||| ||| |||| ||||||||||||||    
T  21077506 ttcttccatctttcaatgccttggaacttgaaatgaattttattcaatttgtattgtcttc 21077446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 39134287 - 39134426
Alignment:
Q  1 aaacaatagaaaaacataccctagagagaacaagagaatgatggagatcctcgtccttgaagctcttaatgcttgacccttgccttgtaccactagtttt 100  Q
    |||||||||||||||||||  || ||||||||| || | ||| ||||||||| |||||  | ||| ||||  |||||| ||| ||| ||||  ||| |||    
T  39134287 aaacaatagaaaaacatacattatagagaacaataggaggatagagatcctcttccttacaactc-taataattgacctttgtcttctaccgttagcttt 39134385  T
Q  101 ctgaat-aatacaagagtgtgcaagagtctctatttatagt 140  Q
    |||||| |||| ||| | |||||| ||||| ||||||||||    
T  39134386 ctgaataaataaaagtgcgtgcaaaagtctatatttatagt 39134426  T

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Target: chr2 (Bit Score: 129; Significance: 1e-66; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 1 - 410
Target Start/End: Original strand, 14921587 - 14922000
Alignment:
Q  1 aaacaatagaaaaacataccctagagagaacaagagaatgatggagatcctcgtccttgaagctcttaatgcttgacccttgccttgtaccactagtttt 100  Q
    ||||||| ||||||||||||||||||||||||| |||| ||||||  |||||  ||||||| ||| | ||| |||||| ||||||| |||| ||||  ||    
T  14921587 aaacaattgaaaaacataccctagagagaacaatagaaggatgga--tcctctgccttgaaactcgtgatgattgacctttgccttttaccgctagcctt 14921684  T
Q  101 ctgaat-aatacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaagagagtgaaaatagggttttt---ccaccaaaaacggc 196  Q
    |||||| |||  |||||||||||||          ||||||| ||||||||||| || ||||||||||||||||||  |||||   |||| ||||| ||     
T  14921685 ctgaatgaatcaaagagtgtgcaagg---------tatagtgaatgattacttaaggattaagagagtgaaaatagattttttttcccacaaaaaaagga 14921775  T
Q  197 ttggaaaacaagcaaacatcacttcctccctgtgtccatgcgt-ggggcgcatgaggcatcccctcttgcgcaaattctgcagttttcgaccatttttca 295  Q
    |||||||||||||||||| |||| ||| ||  |||| |||||  ||||||||||||||| |||||| ||||| |||| |||||||||| ||| |||||||    
T  14921776 ttggaaaacaagcaaacaacactccctacccttgtcaatgcgcaggggcgcatgaggcagcccctcctgcgcgaattatgcagttttcaaccctttttca 14921875  T
Q  296 agcgttcttctatcttgcgatgtcttggaacttcaaatgaagtttcttcactttgtattgt----------cttctaagaactattgaacttcaatcttc 385  Q
    ||||||||||| ||||| |||| ||||||| |||||||||  |||||||||||||||||||          ||||||||||| |||||||||||||||||    
T  14921876 agcgttcttctgtcttgtgatgccttggaaattcaaatgatttttcttcactttgtattgtctacatataccttctaagaaccattgaacttcaatcttc 14921975  T
Q  386 atatcctcgatccttcacgtgatgt 410  Q
    ||||||||||| |||||| ||||||    
T  14921976 atatcctcgattcttcacatgatgt 14922000  T

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Target: chr2; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 25460536 - 25460338
Alignment:
Q  1 aaacaatagaaaaacataccctagagagaacaagagaatgatggagatcctcgtccttgaagctcttaatgcttgacccttgccttgtacc-actagttt 99  Q
    ||||||||||||||||||| |||||||||||||||| ||| |||| |||||     |||   ||| | ||| ||||||||||||||||||| | ||| ||    
T  25460536 aaacaatagaaaaacatacactagagagaacaagaggatggtggatatcct-----ttgc--ctcctgatgtttgacccttgccttgtacccattagctt 25460444  T
Q  100 tctgaataa-tacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaagagagtgaaaatagggtttttccaccaaaaacggctt 198  Q
    ||||||||| || |||| |||| ||  |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  25460443 tctgaataaataaaagattgtgaaaaggtctctatttatagtgtatgattacttagggattaagagagtgaaaatagggtttttccaccaaaaacagctt 25460344  T

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Target: chr2; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 5 - 179
Target Start/End: Complemental strand, 24188620 - 24188450
Alignment:
Q  5 aatagaaaaacataccctagagagaacaagagaatgatggagatcctcgtccttgaagctcttaatgcttgacccttgccttgtaccactagttttctga 104  Q
    |||||||||||| ||||||||||||| | ||| | |||| |||||||| ||| ||||||||||||| |||||||||||||||||||| |||| ||| |||    
T  24188620 aatagaaaaacacaccctagagagaatatgagtaagatgaagatcctcttccgtgaagctcttaatccttgacccttgccttgtaccgctagctttttga 24188521  T
Q  105 ataatacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaagagagtgaaaatagggtt 179  Q
    ||     || ||| |||||| |||||||||||| ||| ||||||||| |||||||||||||||||||||| ||||    
T  24188520 at----gaatagtatgcaagggtctctatttattgtgtatgattactcaggggttaagagagtgaaaataaggtt 24188450  T

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Target: chr2; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 18819295 - 18819131
Alignment:
Q  1 aaacaatagaaaaacataccctagagagaacaagagaatgatggagatcctcgtccttgaagctcttaatgcttgacccttgccttgtaccactagtttt 100  Q
    ||||||||||||||||||||||||  |||||||||| | ||| |||||||||   || |||||| || ||| |||||| ||||||||||||  ||| |||    
T  18819295 aaacaatagaaaaacataccctagtaagaacaagaggaggatagagatcctctgtctggaagct-ttgatgtttgaccattgccttgtaccgttagcttt 18819197  T
Q  101 ctgaat-aatacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaagaga 165  Q
    |||||| |||| |||||| |||||| ||||||||||||| | ||| |||||||||| |||||||||    
T  18819196 ctgaataaataaaagagtttgcaagggtctctatttataatacatcattacttaggagttaagaga 18819131  T

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Target: chr2; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 40 - 191
Target Start/End: Original strand, 27917560 - 27917712
Alignment:
Q  40 gatggagatcctcgtccttgaagctcttaatgcttgacccttgccttgtaccactagttttctgaat-aatacaagagtgtgcaagagtctctatttata 138  Q
    |||||||||||||  || |||||||| | ||||||||||||||||||||||| |||| ||||||||| |||| || |||||||||| ||||||| |||||    
T  27917560 gatggagatcctctaccatgaagctcctgatgcttgacccttgccttgtaccgctagctttctgaatgaataaaatagtgtgcaagggtctcta-ttata 27917658  T
Q  139 gtgcatgattacttaggggttaagagagtgaaaataggg-tttttccaccaaaa 191  Q
    || ||||||||||| || |||||| |||  ||| ||||| ||||||||||||||    
T  27917659 gtccatgattacttcggagttaagggagcaaaattagggttttttccaccaaaa 27917712  T

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Target: chr2; HSP #6
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 242 - 360
Target Start/End: Original strand, 34063625 - 34063742
Alignment:
Q  242 ggcgcatgaggcatcccctcttgcgcaaattctgcagttttcgaccatttttcaagcgttcttctatcttgcgatgtcttggaacttcaaatgaagtttc 341  Q
    ||||||||||||| || ||| ||| |||||| ||||||||||||| ||||||| ||||||||||  |||  | ||| |||||||||||||||||| ||||    
T  34063625 ggcgcatgaggcagcctctcctgcacaaattatgcagttttcgac-atttttctagcgttcttccgtctcacaatgccttggaacttcaaatgaattttc 34063723  T
Q  342 ttcactttgtattgtcttc 360  Q
    |||||||||||||||||||    
T  34063724 ttcactttgtattgtcttc 34063742  T

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Target: chr2; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 18235810 - 18235987
Alignment:
Q  1 aaacaatagaaaaacataccctagagagaacaagagaatgatggagatcctcgtccttgaagctcttaatgcttgacccttgccttgtaccactagtttt 100  Q
    |||||||||||||||||||| ||||||||| ||||  | ||||||||||||| ||||| || ||||| ||||||||||||| ||||||||| |||| |||    
T  18235810 aaacaatagaaaaacataccatagagagaataagaagaggatggagatcctcttccttaaatctcttgatgcttgacccttaccttgtaccgctagcttt 18235909  T
Q  101 ctgaat-------------aatacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaagaga 165  Q
    ||| ||             |||| ||| |||| ||||||||||||| |||| ||||| ||||||||||||||||||||    
T  18235910 ctgtatgcttttctaaatgaataaaagtgtgtacaagagtctctatctataatgcatcattacttaggggttaagaga 18235987  T

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Target: chr2; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 17884063 - 17884224
Alignment:
Q  1 aaacaatagaaaaacataccctagagagaacaagagaatgatggagatcctcgtccttgaagctcttaatgcttgacccttgccttgtaccactagtttt 100  Q
    ||||||||||||||||||||||||| || ||||||| ||||  || ||||||  ||||||| ||| | |||||||||||||||||||||| ||||| |||    
T  17884063 aaacaatagaaaaacataccctagaaaggacaagaggatgacagaaatcctctgccttgaatctc-tgatgcttgacccttgccttgtactactagcttt 17884161  T
Q  101 ctgaat-aatacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaaga 163  Q
    || ||| |||| |||  |||||||  ||||||||||||||| ||| ||||||||| | ||||||    
T  17884162 ctaaatgaataaaagtatgtgcaatggtctctatttatagt-cataattacttagagtttaaga 17884224  T

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Target: chr2; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 79 - 155
Target Start/End: Complemental strand, 39732196 - 39732119
Alignment:
Q  79 cttgccttgtaccactagttttctgaat-aatacaagagtgtgcaagagtctctatttatagtgcatgattacttagg 155  Q
    ||||||||||||| |||| ||||||||| |||| ||| ||||| ||||||||||||||||||||||| ||||||||||    
T  39732196 cttgccttgtaccgctagctttctgaatgaataaaagtgtgtgaaagagtctctatttatagtgcatcattacttagg 39732119  T

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Target: chr2; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 55 - 165
Target Start/End: Complemental strand, 24047895 - 24047785
Alignment:
Q  55 ccttgaagctcttaatgcttgacccttgccttgtaccactagttttctgaat-aatacaagagtgtgcaagagtctctatttatagtgcatgattactta 153  Q
    |||||||||||| | |||||| | ||| |||| ||||||||| ||||| ||| ||||  || |||||||||| |||||||||||||||||| ||||||||    
T  24047895 ccttgaagctctga-tgcttggctctttccttataccactagctttctcaatgaataagagtgtgtgcaagaatctctatttatagtgcatcattactta 24047797  T
Q  154 ggggttaagaga 165  Q
    ||| ||||||||    
T  24047796 gggtttaagaga 24047785  T

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Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 8 - 165
Target Start/End: Original strand, 21844328 - 21844485
Alignment:
Q  8 agaaaaacataccctagagagaacaagagaatgatggagatcctcgtccttgaagctcttaatgcttgacccttgccttgtaccactagttttctgaata 107  Q
    ||||||||| |||||| ||||||| |||| |  ||| | ||||||  |||||||||||| | |||||||||| ||||||| ||| |||| || |||||||    
T  21844328 agaaaaacaaaccctaaagagaacgagaggagcatgtaaatcctctgccttgaagctctga-tgcttgacccatgccttgaaccgctagcttactgaata 21844426  T
Q  108 a-tacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaagaga 165  Q
    | || ||| ||||||| | || |||||||||| || || ||||||||||| ||||||||    
T  21844427 aataaaagtgtgtgcaggggtttctatttatattgaattattacttagggtttaagaga 21844485  T

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Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 253 - 411
Target Start/End: Original strand, 17414958 - 17415125
Alignment:
Q  253 catcccctcttgcgcaaattctgcagttttcgaccatttttcaagcgttcttctatcttgcgatgtcttggaacttcaaatgaagtttcttcactttgta 352  Q
    ||||||||| || || |||| || |||||| | || |||||  ||||||||||  |||||| ||||||| |||||| ||||||| |||||||||||| |     
T  17414958 catcccctcctgtgcgaattatgtagtttttgtcccttttttgagcgttcttccgtcttgcaatgtcttagaacttgaaatgaattttcttcactttttg 17415057  T
Q  353 ttgtctt----------ctaagaactattgaacttcaatcttcatatcctcgatccttcacgtgatgtc 411  Q
    |||||||          |||||||| |||| | |||||||||||| |||||||||||||||||||||||    
T  17415058 ttgtcttcaaataactcctaagaaccattg-atttcaatcttcatgtcctcgatccttcacgtgatgtc 17415125  T

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Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 67 - 163
Target Start/End: Complemental strand, 17862938 - 17862842
Alignment:
Q  67 taatgcttgacccttgccttgtaccactagttttctgaat-aatacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaaga 163  Q
    |||||| ||||||||||||||||||||||  || |||||| |||| ||| |||||||| ||||| |||||||||||||| |||||||| || ||||||    
T  17862938 taatgcctgacccttgccttgtaccactaactt-ctgaatgaataaaagtgtgtgcaaaagtctatatttatagtgcatcattacttaaggtttaaga 17862842  T

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Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 241 - 365
Target Start/End: Complemental strand, 18819033 - 18818910
Alignment:
Q  241 gggcgcatgaggcatcccctcttgcgcaaattctgcagttttcgaccatttttcaagcgttcttctatcttgcgatgtcttggaacttcaaatgaagttt 340  Q
    |||||||||||||    ||||||| || |||| ||||||||||  || ||||| | || ||||||  |||||| |||||||||||||| || |||| |||    
T  18819033 gggcgcatgaggcggtgcctcttgtgcgaattttgcagttttcatccctttttga-gcattcttccgtcttgcaatgtcttggaacttgaattgaatttt 18818935  T
Q  341 cttcactttgtattgtcttctaaga 365  Q
    |||||||||||||||||||| ||||    
T  18818934 cttcactttgtattgtcttcaaaga 18818910  T

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Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 80 - 163
Target Start/End: Complemental strand, 31262497 - 31262413
Alignment:
Q  80 ttgccttgtaccactagttttctgaat-aatacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaaga 163  Q
    ||||||||||||  ||| ||||| ||| |||| |||||||| |||| ||||||||||||||||||| |||||||||||| |||||    
T  31262497 ttgccttgtaccgttagatttctaaatgaataaaagagtgtacaagtgtctctatttatagtgcatcattacttaggggataaga 31262413  T

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Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 10 - 59
Target Start/End: Complemental strand, 9504520 - 9504471
Alignment:
Q  10 aaaaacataccctagagagaacaagagaatgatggagatcctcgtccttg 59  Q
    ||||||||||||||||||||||||||| | ||||||||||||| ||||||    
T  9504520 aaaaacataccctagagagaacaagaggaggatggagatcctcttccttg 9504471  T

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Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 10 - 59
Target Start/End: Complemental strand, 9515886 - 9515837
Alignment:
Q  10 aaaaacataccctagagagaacaagagaatgatggagatcctcgtccttg 59  Q
    ||||||||||||||||||||||||||| | ||||||||||||| ||||||    
T  9515886 aaaaacataccctagagagaacaagaggaggatggagatcctcttccttg 9515837  T

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Target: chr2; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 21842694 - 21842858
Alignment:
Q  1 aaacaatagaaaaacataccctagagagaacaagagaatgatggagatcctcgtccttgaagctcttaatgcttgacccttgccttgtaccactagtttt 100  Q
    |||||||| |||| ||||||||| ||||||| |||| |  ||| | ||| ||  |||||||||||| | ||||||| || ||||||| ||| |||| |||    
T  21842694 aaacaatataaaagcataccctaaagagaacgagaggagcatgtaaatcatctgccttgaagctctga-tgcttgaaccatgccttgaacctctagcttt 21842792  T
Q  101 ctgaat-aatacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaagaga 165  Q
    |||||| |||| ||| || |||||| || ||| |||||| || || ||||||||||| ||||||||    
T  21842793 ctgaataaataaaagtgtatgcaagggtttctgtttatattgaattattacttagggtttaagaga 21842858  T

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Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 289 - 411
Target Start/End: Complemental strand, 19541320 - 19541189
Alignment:
Q  289 tttttcaagcgttcttctatcttgcgatgtcttggaacttcaaatgaagtttcttcactttgtattgtcttc---------taagaactattgaacttca 379  Q
    |||||| ||| || |||| |||||| ||| ||  |||||| |||||||| ||||| |||||||||||||||          ||||||| ||||  |||||    
T  19541320 tttttcgagcatttttctgtcttgcaatgcctatgaacttgaaatgaagattcttaactttgtattgtctttaataccttataagaaccattggtcttca 19541221  T
Q  380 atcttcatatcctcgatccttcacgtgatgtc 411  Q
    |||||||||||||||||||||||| |||||||    
T  19541220 atcttcatatcctcgatccttcacttgatgtc 19541189  T

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Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 72 - 165
Target Start/End: Original strand, 15454070 - 15454163
Alignment:
Q  72 cttgacccttgccttgtaccactagttttctgaat-aatacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaagaga 165  Q
    ||||||| ||| |||||||| |||| ||||| ||| |||| ||| ||||||||| ||||| ||||||||| ||| ||||||||||| ||||||||    
T  15454070 cttgaccattgtcttgtacccctaggtttctaaatgaata-aagtgtgtgcaagggtctcgatttatagttcatcattacttagggtttaagaga 15454163  T

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Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 30999385 - 30999348
Alignment:
Q  1 aaacaatagaaaaacataccctagagagaacaagagaa 38  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  30999385 aaacaatagaaaaacataccctagagagaacaaaagaa 30999348  T

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Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 27416759 - 27416810
Alignment:
Q  1 aaacaatagaaaaacataccctagagagaacaagagaatgatggagatcctc 52  Q
    ||||||||||||| ||||||  |||||||||||||| | |||||||||||||    
T  27416759 aaacaatagaaaagcatacctcagagagaacaagaggaggatggagatcctc 27416810  T

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Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 322 - 360
Target Start/End: Original strand, 16593614 - 16593652
Alignment:
Q  322 ggaacttcaaatgaagtttcttcactttgtattgtcttc 360  Q
    ||||||| ||||||| |||||||||||||||||||||||    
T  16593614 ggaacttgaaatgaattttcttcactttgtattgtcttc 16593652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 137
Target Start/End: Original strand, 21848035 - 21848104
Alignment:
Q  69 atgcttgacccttgccttgtaccactagttttctgaat-aatacaagagtgtgcaagagtctctatttat 137  Q
    |||||||| ||||| ||||||| |||| |  ||||||| |||| ||| ||||||||||||||||||||||    
T  21848035 atgcttgaaccttgtcttgtactactactaatctgaatgaataaaagtgtgtgcaagagtctctatttat 21848104  T

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Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 319 - 356
Target Start/End: Original strand, 27417123 - 27417160
Alignment:
Q  319 cttggaacttcaaatgaagtttcttcactttgtattgt 356  Q
    |||||||||| ||||||| |||||||||||||||||||    
T  27417123 cttggaacttgaaatgaattttcttcactttgtattgt 27417160  T

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Target: chr7 (Bit Score: 121; Significance: 7e-62; HSPs: 37)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 24596494 - 24596742
Alignment:
Q  1 aaacaatagaaaaacataccctagagagaacaagagaatgatggagatcctcgtccttgaagctcttaatgcttgacccttgccttgtaccactagtttt 100  Q
    |||||||| |||||||||| |||||||||||||||| ||||| |||||| ||  ||||||||||| | ||||||||||||||||||||||||  || |||    
T  24596494 aaacaatataaaaacatacactagagagaacaagaggatgatagagatcatctgccttgaagctcctgatgcttgacccttgccttgtaccatcagcttt 24596593  T
Q  101 ctgaat-aatacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaagagagtgaaaatagggtttttccaccaaaaacggcttg 199  Q
    |||||| |||| ||||||||||||  ||||||||||||| ||||||||||  || ||||||||| ||||||||||||  |||||||||||||| ||||||    
T  24596594 ctgaatgaataaaagagtgtgcaatggtctctatttataatgcatgattatatacgggttaagatagtgaaaataggagttttccaccaaaaatggcttg 24596693  T
Q  200 gaaaacaagcaaacatcacttcctccctgtgtccatgcgtggggcgcat 248  Q
    ||||||||||||||| |||||  |  |||||||||||||  ||||||||    
T  24596694 gaaaacaagcaaacaacacttaatgtctgtgtccatgcgcagggcgcat 24596742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 5 - 191
Target Start/End: Complemental strand, 9552758 - 9552570
Alignment:
Q  5 aatagaaaaacataccctagagagaacaagagaatgatggagatcctcgtccttgaagctcttaatgcttgacccttgccttg-taccactagttttctg 103  Q
    |||||||||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||||||||||||||  |||  ||||||||||    
T  9552758 aatagaaaaatataccctagagagaacaagaggatgatggagatcctcttccttgaagctcttgatgcttgacccttgccttgccaccgttagttttctg 9552659  T
Q  104 aat-aatacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaagagagtgaaaatagggtttttccaccaaaa 191  Q
    ||| | |  ||| ||||||||  |||||||||| |||| || | || |||||||||| |||||||||||||||||||||| ||||||||    
T  9552658 aatgagttaaagtgtgtgcaacggtctctatttgtagttcaaggtttcttaggggttgagagagtgaaaatagggtttttacaccaaaa 9552570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 9 - 191
Target Start/End: Complemental strand, 9801150 - 9800966
Alignment:
Q  9 gaaaaacataccctagagagaacaagagaatgatggagatcctcgtccttgaagctcttaatgcttgacccttgccttg-taccactagttttctgaat- 106  Q
    |||||||| ||||||||||||||||||| | ||||||||||||| ||||| |||||||| |||||||||||||||||||  ||| |||||||| |||||     
T  9801150 gaaaaacacaccctagagagaacaagaggaggatggagatcctcttccttaaagctcttgatgcttgacccttgccttgccaccgctagttttttgaatg 9801051  T
Q  107 aatacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaagagagtgaaaatagggtttttccaccaaaa 191  Q
    | |  ||| || |||||  ||||||||||||||| || | || |||||||||||||||||||||||||||| |||||||||||||    
T  9801050 agttaaagtgtatgcaacggtctctatttatagttcaaggtttcttaggggttaagagagtgaaaataggggttttccaccaaaa 9800966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 58 - 205
Target Start/End: Complemental strand, 4829387 - 4829239
Alignment:
Q  58 tgaagctcttaatgcttgacccttgccttgtaccactagttttctgaat-aatacaagagtgtgcaagagtctctatttatagtgcatgattacttaggg 156  Q
    ||||| |||| ||||||||||||||||||||||| |||| ||||| ||| |||| || | |||||| ||||||||||| |||||| |||| |||||||||    
T  4829387 tgaagatcttgatgcttgacccttgccttgtaccgctagctttctaaatgaataaaataatgtgcatgagtctctattcatagtggatgactacttaggg 4829288  T
Q  157 gttaagagagtgaaaatagggtttttccaccaaaaacggcttggaaaac 205  Q
    ||||||||||||||||||| |||||||||||||||||  ||||||||||    
T  4829287 gttaagagagtgaaaatagagtttttccaccaaaaacaacttggaaaac 4829239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 5 - 191
Target Start/End: Complemental strand, 9760712 - 9760524
Alignment:
Q  5 aatagaaaaacataccctagagagaacaagagaatgatggagatcctcgtccttgaagctcttaatgcttgacccttgccttg-taccactagttttctg 103  Q
    |||||||||||||||| |||||||||||| || | ||||||||||||| |||||||||||||| ||| |||||||||| ||||  ||| |||||||| ||    
T  9760712 aatagaaaaacataccttagagagaacaataggaggatggagatcctcttccttgaagctcttgatggttgacccttgtcttgccacccctagttttttg 9760613  T
Q  104 aat-aatacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaagagagtgaaaatagggtttttccaccaaaa 191  Q
    ||| | |  ||| || |||||  ||||||||||||||| || | || |||||||||||||||||||||||||||| |||||||||||||    
T  9760612 aatgagttaaagtgtatgcaacggtctctatttatagttcaaggtttcttaggggttaagagagtgaaaataggggttttccaccaaaa 9760524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 8 - 165
Target Start/End: Complemental strand, 5636814 - 5636657
Alignment:
Q  8 agaaaaacataccctagagagaacaagagaatgatggagatcctcgtccttgaagctcttaatgcttgacccttgccttgtaccactagttttctgaat- 106  Q
    ||||||| ||||||||||||||||||||| | | |||||||| ||  |||||||||| || |||||||||| ||||||||||| ||||| |||||||||     
T  5636814 agaaaaaaataccctagagagaacaagaggaggttggagatcatctgccttgaagct-ttgatgcttgaccattgccttgtactactagctttctgaatg 5636716  T
Q  107 aatacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaagaga 165  Q
    |||| ||| ||||||||| ||||||||||||||||||| ||||||||| | ||||||||    
T  5636715 aataaaagtgtgtgcaagggtctctatttatagtgcatcattacttagtgattaagaga 5636657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 134 - 249
Target Start/End: Complemental strand, 8606338 - 8606224
Alignment:
Q  134 ttatagtgcatgattacttaggggttaagagagtgaaaatagggtttttccaccaaaaacggcttggaaaacaagcaaacatcacttcctccctgtgtcc 233  Q
    ||||||||||||| ||| |||||||||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||| || ||||| | |||||||    
T  8606338 ttatagtgcatgaatacataggggttaagagagtgaaaatagagtttt-ccaccaaaaacggtttggaaaacaagcaaacaacatttccttcgtgtgtcc 8606240  T
Q  234 atgcgtggggcgcatg 249  Q
    |||||| |||||||||    
T  8606239 atgcgtagggcgcatg 8606224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 5312277 - 5312500
Alignment:
Q  1 aaacaatagaaaaacataccctagagagaacaagagaatgatggagatcctcgtccttgaagctcttaatgcttgacccttgccttgtaccactagtttt 100  Q
    ||||||| |||||||||||||||||||||||||||| | |||||||||| |   ||||||| ||| | ||| ||||| |||||||||||||||||| |||    
T  5312277 aaacaattgaaaaacataccctagagagaacaagaggaggatggagatcttataccttgaaactccttatgtttgactcttgccttgtaccactagcttt 5312376  T
Q  101 ctgaat-------------aatacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaagagagtgaaaatagggtttttccacc 187  Q
    || |||             |||| ||  |||||||||||||||| |||||||| ||| ||||||||||||||||||| ||||||||  || ||||||||     
T  5312377 ctcaatgcttttcggaatgaataaaaatgtgtgcaagagtctctgtttatagtacatcattacttaggggttaagag-gtgaaaatttgggttttccact 5312475  T
Q  188 aaaaacggcttggaaaacaagcaaa 212  Q
    ||||||  |||||||||||||||||    
T  5312476 aaaaacaacttggaaaacaagcaaa 5312500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 9 - 165
Target Start/End: Original strand, 22334791 - 22334948
Alignment:
Q  9 gaaaaacataccctagagagaacaagagaatgatggagatcctcgtccttgaagctcttaatgcttgacccttgccttgtaccactagttttctgaa-ta 107  Q
    |||||||||| | |||| ||| |||||| |  ||||||||||||  |||  ||| |||| |||||||||||||||||||||||||||| |||||||| ||    
T  22334791 gaaaaacatatcttagaaagaccaagaggagaatggagatcctctgcctgaaagttcttgatgcttgacccttgccttgtaccactagctttctgaatta 22334890  T
Q  108 atacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaagaga 165  Q
    ||| |||||||| |||   ||| |||||||||||||| ||||||||||||||||||||    
T  22334891 ataaaagagtgttcaatgatctttatttatagtgcatcattacttaggggttaagaga 22334948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 56 - 236
Target Start/End: Complemental strand, 30406134 - 30405952
Alignment:
Q  56 cttgaagctcttaatgcttgacccttgccttgtaccactagttttctgaat-aatacaagagtgtgcaagagtctctatttatagtgcatgattacttag 154  Q
    ||||| |||| | |||||||||  || ||||||||| |||| ||| ||||| |||| |||  |||||||| || ||||||||||||| |||||||| |||    
T  30406134 cttgatgctcctgatgcttgactattaccttgtaccgctagctttatgaatgaataaaagtttgtgcaagggtttctatttatagtgtatgattacatag 30406035  T
Q  155 gggttaagagagtgaaaatagggttt-ttccaccaaaaacggcttggaaaacaagcaaacatcacttcctccctgtgtccatg 236  Q
       |||||||||||||||||||||||  | ||| |||||| |||||||||||||||||||| |||| ||| || |||||||||    
T  30406034 caattaagagagtgaaaatagggtttccttcacaaaaaacagcttggaaaacaagcaaacaacactccctacccgtgtccatg 30405952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 256 - 359
Target Start/End: Original strand, 3487164 - 3487266
Alignment:
Q  256 cccctcttgcgcaaattctgcagttttcgaccattttt-caagcgttcttctatcttgcgatgtcttggaacttcaaatgaagtttcttcactttgtatt 354  Q
    |||||| ||| | |||||| ||||||| |||||||||| |||| |||||||  |||||| ||||||||||||||||||||||  ||||||||||||||||    
T  3487164 cccctcgtgctcgaattctacagtttttgaccattttttcaagagttcttccgtcttgcaatgtcttggaacttcaaatgaa--ttcttcactttgtatt 3487261  T
Q  355 gtctt 359  Q
    |||||    
T  3487262 gtctt 3487266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 269 - 411
Target Start/End: Original strand, 24596815 - 24596966
Alignment:
Q  269 aattctgcagttttcgaccatttttcaagcgttcttctatcttgcgatgtcttggaacttcaaatgaagtttcttcactttgtattg----------tct 358  Q
    |||| ||||||||||||||||||| || || |||||   |||||| ||| |||||||||||||||||| ||||||||||||||||||          |||    
T  24596815 aattatgcagttttcgaccatttt-cacgcattctttcgtcttgcaatgccttggaacttcaaatgaattttcttcactttgtattgtcttcaaatttct 24596913  T
Q  359 tctaagaactattgaacttcaatcttcatatcctcgatccttcacgtgatgtc 411  Q
    |||| |||| | |||||||||||||| |||||||||||| | |||||||||||    
T  24596914 tctatgaaccactgaacttcaatctttatatcctcgatcttccacgtgatgtc 24596966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 4091986 - 4092140
Alignment:
Q  1 aaacaatagaaaaacataccctagagagaacaagagaatgatggagatcctcgtcctt-gaagctcttaatgcttgacccttgccttgtaccactagttt 99  Q
    |||||||||||||||||||| ||||||||||||||| | |||||||||||||  |||| ||| ||| | ||||||||||||||||||  ||| |||| ||    
T  4091986 aaacaatagaaaaacatacc-tagagagaacaagaggaagatggagatcctctgccttggaacctc-tgatgcttgacccttgccttcaaccgctagctt 4092083  T
Q  100 tctgaat-aatacaagagtgtgcaagagtctctatttatagtgcatgattacttagg 155  Q
    ||||||| ||||  |  ||||| ||| |||||||||||||    |||||||||||||    
T  4092084 tctgaatgaataataatgtgtgaaagggtctctatttataacatatgattacttagg 4092140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 356 - 411
Target Start/End: Complemental strand, 23125108 - 23125053
Alignment:
Q  356 tcttctaagaactattgaacttcaatcttcatatcctcgatccttcacgtgatgtc 411  Q
    |||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||    
T  23125108 tcttataagaaccattgaacttcaatcttcatatcctcgatccttcacatgatgtc 23125053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 358 - 412
Target Start/End: Original strand, 21545736 - 21545790
Alignment:
Q  358 ttctaagaactattgaacttcaatcttcatatcctcgatccttcacgtgatgtcc 412  Q
    |||||||||| ||||| |||||||||||||||||| |||||||||||||||||||    
T  21545736 ttctaagaaccattgatcttcaatcttcatatccttgatccttcacgtgatgtcc 21545790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 7777591 - 7777631
Alignment:
Q  1 aaacaatagaaaaacataccctagagagaacaagagaatga 41  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  7777591 aaacaatagaaaaacataccctagagagaacaagagaatga 7777631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 357 - 408
Target Start/End: Complemental strand, 30405800 - 30405749
Alignment:
Q  357 cttctaagaactattgaacttcaatcttcatatcctcgatccttcacgtgat 408  Q
    ||||||||||  ||||||||||||||||||||||||||||||||||| ||||    
T  30405800 cttctaagaatcattgaacttcaatcttcatatcctcgatccttcacatgat 30405749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 20017597 - 20017506
Alignment:
Q  1 aaacaatagaaaaacataccctagagagaacaagagaatgatggagatcctcgtccttgaagctcttaatgcttgacccttgccttgtaccacta 95  Q
    |||||||||||||||||| || |||||||||||||| | |||| |||||||   ||||| | || |||||| ||||||||||||||| |||||||    
T  20017597 aaacaatagaaaaacatagccaagagagaacaagaggaagatgaagatcct--gccttggaact-ttaatgtttgacccttgccttgaaccacta 20017506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 357 - 411
Target Start/End: Complemental strand, 7494902 - 7494849
Alignment:
Q  357 cttctaagaactattgaacttcaatcttcatatcctcgatccttcacgtgatgtc 411  Q
    ||||||||||| ||| |||||||||||||||||||| ||||||||| ||||||||    
T  7494902 cttctaagaaccatt-aacttcaatcttcatatccttgatccttcatgtgatgtc 7494849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 361 - 411
Target Start/End: Original strand, 9761328 - 9761377
Alignment:
Q  361 taagaactattgaacttcaatcttcatatcctcgatccttcacgtgatgtc 411  Q
    ||||||| ||||| |||||||||||||||||| ||||||||||||||||||    
T  9761328 taagaaccattga-cttcaatcttcatatccttgatccttcacgtgatgtc 9761377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 18468221 - 18468263
Alignment:
Q  1 aaacaatagaaaaacataccctagagagaacaagagaatgatg 43  Q
    ||||||||||||||||||||||| ||||||||| |||||||||    
T  18468221 aaacaatagaaaaacataccctaaagagaacaaaagaatgatg 18468263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 375 - 411
Target Start/End: Original strand, 4977746 - 4977782
Alignment:
Q  375 cttcaatcttcatatcctcgatccttcacgtgatgtc 411  Q
    |||||||||||||||||||||||||||| ||||||||    
T  4977746 cttcaatcttcatatcctcgatccttcatgtgatgtc 4977782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 21545354 - 21545398
Alignment:
Q  1 aaacaatagaaaaacataccctagagagaacaagagaatgatgga 45  Q
    |||||||| ||||||||||||||||||||||||||| || |||||    
T  21545354 aaacaatataaaaacataccctagagagaacaagaggataatgga 21545398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 322 - 411
Target Start/End: Complemental strand, 29544771 - 29544672
Alignment:
Q  322 ggaacttcaaatgaagtttcttcactttgtattgtcttc----------taagaactattgaacttcaatcttcatatcctcgatccttcacgtgatgtc 411  Q
    ||||||| ||||||| |||||||||||||||||||||||          ||||||  ||||| |||||||||||||||| | ||||||||| ||||||||    
T  29544771 ggaacttgaaatgaattttcttcactttgtattgtcttcaaaaaccttctaagaatcattgatcttcaatcttcatatctttgatccttcatgtgatgtc 29544672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 33
Target Start/End: Complemental strand, 7493893 - 7493862
Alignment:
Q  2 aacaatagaaaaacataccctagagagaacaa 33  Q
    ||||||||||||||||||||||||||||||||    
T  7493893 aacaatagaaaaacataccctagagagaacaa 7493862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 107 - 165
Target Start/End: Original strand, 3268533 - 3268591
Alignment:
Q  107 aatacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaagaga 165  Q
    |||| ||| |||||||||||||| ||| |||||| ||| ||||||||||| ||||||||    
T  3268533 aataaaagtgtgtgcaagagtctatatatatagtacatcattacttagggtttaagaga 3268591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 322 - 360
Target Start/End: Complemental strand, 20017204 - 20017166
Alignment:
Q  322 ggaacttcaaatgaagtttcttcactttgtattgtcttc 360  Q
    ||||||| ||||||| |||||||||||||||||||||||    
T  20017204 ggaacttgaaatgaattttcttcactttgtattgtcttc 20017166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 40 - 106
Target Start/End: Original strand, 21537083 - 21537149
Alignment:
Q  40 gatggagatcctcgtccttgaagctcttaatgcttgacccttgccttgtaccactagttttctgaat 106  Q
    |||||||||||||  | ||||||||||| |||||| |||||| ||||||||| |||| ||| |||||    
T  21537083 gatggagatcctctccattgaagctcttgatgctttaccctttccttgtaccgctagctttttgaat 21537149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 319 - 360
Target Start/End: Complemental strand, 4829042 - 4829001
Alignment:
Q  319 cttggaacttcaaatgaagtttcttcactttgtattgtcttc 360  Q
    |||||||||| ||||||| | |||||||||||||||||||||    
T  4829042 cttggaacttgaaatgaattatcttcactttgtattgtcttc 4829001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 323 - 360
Target Start/End: Complemental strand, 7815573 - 7815536
Alignment:
Q  323 gaacttcaaatgaagtttcttcactttgtattgtcttc 360  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  7815573 gaacttgaaatgaattttcttcactttgtattgtcttc 7815536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 7815923 - 7815886
Alignment:
Q  1 aaacaatagaaaaacataccctagagagaacaagagaa 38  Q
    |||||||||||||||||||||||||| |||||| ||||    
T  7815923 aaacaatagaaaaacataccctagagtgaacaaaagaa 7815886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 9071039 - 9071002
Alignment:
Q  1 aaacaatagaaaaacataccctagagagaacaagagaa 38  Q
    |||||||||||||||||||| ||||||||| |||||||    
T  9071039 aaacaatagaaaaacataccttagagagaagaagagaa 9071002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 361 - 410
Target Start/End: Original strand, 9801787 - 9801835
Alignment:
Q  361 taagaactattgaacttcaatcttcatatcctcgatccttcacgtgatgt 410  Q
    ||||||| ||||| |||||||||||||||||| |||||||||| ||||||    
T  9801787 taagaaccattga-cttcaatcttcatatccttgatccttcacatgatgt 9801835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 96
Target Start/End: Original strand, 17880451 - 17880535
Alignment:
Q  11 aaaacataccctagagagaacaagagaatgatggagatcctcgtccttgaagctcttaatgcttgacccttgccttgtaccactag 96  Q
    |||||||||| |||||||||||| || | |||||||||||||  | || |||||| ||||||||||   ||||||| |||||||||    
T  17880451 aaaacataccatagagagaacaataggaggatggagatcctctacattaaagctc-taatgcttgatatttgccttataccactag 17880535  T

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Target: chr7; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 21472396 - 21472359
Alignment:
Q  1 aaacaatagaaaaacataccctagagagaacaagagaa 38  Q
    |||||||||||||||||| |||||||||||||| ||||    
T  21472396 aaacaatagaaaaacatatcctagagagaacaaaagaa 21472359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 357 - 397
Target Start/End: Original strand, 12358671 - 12358711
Alignment:
Q  357 cttctaagaactattgaacttcaatcttcatatcctcgatc 397  Q
    ||||||||||| ||||| |||||||||||||||||| ||||    
T  12358671 cttctaagaaccattgatcttcaatcttcatatccttgatc 12358711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 375 - 411
Target Start/End: Original strand, 20461574 - 20461610
Alignment:
Q  375 cttcaatcttcatatcctcgatccttcacgtgatgtc 411  Q
    |||||||||||||||||| |||||||||| |||||||    
T  20461574 cttcaatcttcatatccttgatccttcacttgatgtc 20461610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 118; Significance: 5e-60; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 26298394 - 26298177
Alignment:
Q  1 aaacaatagaaaaacataccctagagagaacaagagaatgatggagatcctcgtccttgaagctcttaatgcttgacccttgccttgtaccactagtttt 100  Q
    ||||||||||| |||||||   ||||| |||||||| | |||| |||||||| |||||||||||| | |||||||||||||| |||||| |||||| |||    
T  26298394 aaacaatagaataacatacttgagagacaacaagaggaggatgaagatcctcttccttgaagctcatgatgcttgacccttgacttgtagcactagcttt 26298295  T
Q  101 ctgaat-aatacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaagagagtgaaaatagggtttttccaccaaaaacggcttg 199  Q
    || ||| |||| ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||| ||||||| |||||||||| |||||    
T  26298294 ctcaattaataaaagagtgtgcaagagtctctatttataatgcatgattccttaggggttaagagagggaaaataaggttttttcaccaaaaacagcttg 26298195  T
Q  200 gaaaacaagcaaacatca 217  Q
    ||||||||| ||||||||    
T  26298194 gaaaacaaggaaacatca 26298177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 4 - 207
Target Start/End: Complemental strand, 18474816 - 18474610
Alignment:
Q  4 caatagaaaaacataccctagagagaacaagagaatgatggagatcctcgtccttgaagctcttaatgcttgacccttgccttgtaccactagttttctg 103  Q
    ||||||||||| | ||||| ||||||| ||||| | ||||||||| |||  ||||||| ||| | ||||||||||||||||||||||| |||| |||| |    
T  18474816 caatagaaaaataaaccctggagagaataagaggaggatggagatactctgccttgaaactcctgatgcttgacccttgccttgtacctctagctttcag 18474717  T
Q  104 aat-aatacaagagtgtgcaagagtctctatttatagtgcatgattacttagggg--ttaagagagtgaaaatagggtttttccaccaaaaacggcttgg 200  Q
    ||| |||  |||||||| ||   ||||||||||||| || |||||||| ||||||  |||||||||||||||||||| ||||||||||| |||| |||||    
T  18474716 aatgaatgaaagagtgttcatttgtctctatttataatggatgattacgtagggggattaagagagtgaaaataggggttttccaccaagaacgccttgg 18474617  T
Q  201 aaaacaa 207  Q
    |||||||    
T  18474616 aaaacaa 18474610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 7 - 192
Target Start/End: Original strand, 19542596 - 19542783
Alignment:
Q  7 tagaaaaacataccctagagagaacaagagaatgatggagatcctcgtccttgaagctcttaatgcttgacccttgccttgtaccactagttttctgaat 106  Q
    |||||||| ||||||||||||||||||||| | ||||||||| |||  |||| || ||  ||||||||||||||||||||||||| | || |||| ||||    
T  19542596 tagaaaaatataccctagagagaacaagaggaggatggagatactctgccttaaaacttataatgcttgacccttgccttgtacctcaagctttcagaat 19542695  T
Q  107 -aatacaagagtgtgcaagagtctctatttatagtgcatgattactta-ggggttaagagagtgaaaatagggtttttccaccaaaaa 192  Q
     |||  |||||||| || | ||||||||||||| |||||||| |  || |||||||||||||||||||||||||||||||||||||||    
T  19542696 gaatgaaagagtgttcatgtgtctctatttataatgcatgatcatatacggggttaagagagtgaaaatagggtttttccaccaaaaa 19542783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 8 - 223
Target Start/End: Complemental strand, 20892272 - 20892054
Alignment:
Q  8 agaaaaacataccc-tagagagaacaagagaatgatggagatcc-tcgtccttgaagctcttaatgcttgacccttgccttgtaccactagttttctgaa 105  Q
    |||||||||||||| || |||||||||||| | |||||| |||| | ||| || || | ||| ||||||||||||||||||||||| |||| ||| ||||    
T  20892272 agaaaaacatacccgtaaagagaacaagaggaggatggaaatcccttgtc-ttaaaacgcttgatgcttgacccttgccttgtaccgctagctttatgaa 20892174  T
Q  106 taat-acaagagtgtgcaagagtctctatttatagtgcatgattacttagg-ggttaagagagtgaaaatagggtttttccaccaaaaacggcttggaaa 203  Q
    || | | || ||||||||||| || ||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||| ||||| |||||  |||    
T  20892173 tagttaaaatagtgtgcaagattcactatttatagtgcatgattgcttaggtggttaagggagtgaaaatagggtttttccacaaaaaatggcttataaa 20892074  T
Q  204 acaagcaaacatcacttcct 223  Q
     |||| ||||| ||||||||    
T  20892073 gcaagaaaacaacacttcct 20892054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 11475472 - 11475287
Alignment:
Q  1 aaacaatagaaaaacataccctagagagaacaagagaatgatggagatcctcgtccttgaagctcttaatgcttgacccttgccttgtaccactagtttt 100  Q
    |||||||| ||||||||||| |||||||||||||  || |||  |||||||   |||||||||| || |||||||| |||||||||| ||| |||| |||    
T  11475472 aaacaatataaaaacataccttagagagaacaaggtaaggataaagatcctttaccttgaagct-ttgatgcttgatccttgccttgcaccgctagcttt 11475374  T
Q  101 ctgaat-aatacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaagagagtgaaaatagggtttttccac 186  Q
    |||||| |||| ||||||||||||||||||||||||||| | ||| |||||||||||||||| |||   ||| ||||||||| ||||    
T  11475373 ctgaatgaataaaagagtgtgcaagagtctctatttatattacatcattacttaggggttaaaagaagaaaactagggttttcccac 11475287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 10 - 159
Target Start/End: Original strand, 21828709 - 21828858
Alignment:
Q  10 aaaaacataccctagagagaacaagagaatgatggagatcctcgtccttgaagctcttaatgcttgacccttgccttgtaccactagttttctgaat-aa 108  Q
    ||||| || |||||||||||||||||| | ||||||||||||   ||||||||||||| ||||||||||||||| |||| || |||| ||||||||| ||    
T  21828709 aaaaaaattccctagagagaacaagaggaagatggagatcctttgccttgaagctctt-atgcttgacccttgcattgtgccgctagctttctgaatgaa 21828807  T
Q  109 tacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggtt 159  Q
    || | || ||| |||| ||||||||||||||| ||| ||||||||||||||    
T  21828808 taaatgaatgtacaagggtctctatttatagttcatcattacttaggggtt 21828858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 39 - 153
Target Start/End: Original strand, 22489614 - 22489729
Alignment:
Q  39 tgatggagatcctcgtccttgaagctcttaatgcttgacccttgccttgtaccactagttttctgaat-aatacaagagtgtgcaagagtctctatttat 137  Q
    ||||||||||||||  | ||||||||| ||||||||||| |||| |||||||| |||| |||   ||| |||| || |||||||||  ||||||||||||    
T  22489614 tgatggagatcctctactttgaagctcgtaatgcttgactcttgtcttgtaccgctagattttaaaatgaataaaatagtgtgcaatggtctctatttat 22489713  T
Q  138 agtgcatgattactta 153  Q
    ||||||||||||||||    
T  22489714 agtgcatgattactta 22489729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 25 - 165
Target Start/End: Original strand, 22992206 - 22992347
Alignment:
Q  25 agagaacaagagaatgatggagatcctcgtccttgaagctcttaatgcttgacccttgccttgtaccactagttttctgaat-aatacaagagtgtgcaa 123  Q
    |||||||||||| | ||| |||||||||  |||||||||| | |  | ||||||| ||||||||||  |||  ||||| ||| || | ||||||||| ||    
T  22992206 agagaacaagaggaggatagagatcctctaccttgaagctatgatggtttgacccctgccttgtactgctacgtttctaaatcaacaaaagagtgtggaa 22992305  T
Q  124 gagtctctatttatagtgcatgattacttaggggttaagaga 165  Q
    ||||||||||||||||||||| ||||| |||||||| |||||    
T  22992306 gagtctctatttatagtgcatcattacgtaggggtttagaga 22992347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 5 - 165
Target Start/End: Complemental strand, 10342368 - 10342207
Alignment:
Q  5 aatagaaaaacataccctagagagaacaagagaatgatggagatcctcgtccttgaag-ctcttaatgcttgacccttgccttgtaccactagttttctg 103  Q
    |||||||||| ||||||||||||||||||||| | |||||| ||| ||  |||||||  |||| | || |||||||| || ||| |||||||  ||||||    
T  10342368 aatagaaaaatataccctagagagaacaagaggaggatggaaatcatctgccttgaaaactctga-tgtttgaccctcgctttgaaccactaactttctg 10342270  T
Q  104 aat-aatacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaagaga 165  Q
    ||| ||||  |   ||||||||||||| ||||||||||  |||||||||||||| ||||||||    
T  10342269 aattaataataatatgtgcaagagtctatatttatagtaaatgattacttagggtttaagaga 10342207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 40 - 165
Target Start/End: Complemental strand, 19285673 - 19285549
Alignment:
Q  40 gatggagatcctcgtccttgaagctcttaatgcttgacccttgccttgtaccactagttttctgaat-aatacaagagtgtgcaagagtctctatttata 138  Q
    |||| ||||||||  |||||||||||  | || |||||||||||||||||||| ||| ||||||||| |||| |||||||| |||  |||| ||||||||    
T  19285673 gatgaagatcctctgccttgaagctccga-tgtttgacccttgccttgtaccattagctttctgaatgaataaaagagtgt-caaaggtctttatttata 19285576  T
Q  139 gtgcatgattacttaggggttaagaga 165  Q
    |||||| ||||||| ||||||| ||||    
T  19285575 gtgcatcattacttcggggttaggaga 19285549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 308 - 411
Target Start/End: Original strand, 19542973 - 19543086
Alignment:
Q  308 tcttgcgatgtcttggaacttcaaatgaagtttcttcactttgtattgt----------cttctaagaactattgaacttcaatcttcatatcctcgatc 397  Q
    |||||| ||| |||||||||| ||||||| |||||||||||||||||||          |||||||||||||||||| ||||||||| | || |||||||    
T  19542973 tcttgcaatgccttggaacttgaaatgaattttcttcactttgtattgtcttcaaataccttctaagaactattgaaattcaatctttacattctcgatc 19543072  T
Q  398 cttcacgtgatgtc 411  Q
    ||||| ||||||||    
T  19543073 cttcatgtgatgtc 19543086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 55 - 165
Target Start/End: Complemental strand, 33578318 - 33578208
Alignment:
Q  55 ccttgaagctcttaatgcttgacccttgccttgtaccactagttttctgaat-aatacaagagtgtgcaagagtctctatttatagtgcatgattactta 153  Q
    |||||||||||| |||| |||||| |||||||| ||| |||| ||||| ||| |||| ||| ||||||||| |||||||||||||||| || ||||| ||    
T  33578318 ccttgaagctct-aatgtttgaccattgccttgaaccgctagctttctaaatgaataaaagtgtgtgcaagtgtctctatttatagtgtatcattacgta 33578220  T
Q  154 ggggttaagaga 165  Q
      ||||||||||    
T  33578219 taggttaagaga 33578208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 357 - 411
Target Start/End: Original strand, 19219119 - 19219173
Alignment:
Q  357 cttctaagaactattgaacttcaatcttcatatcctcgatccttcacgtgatgtc 411  Q
    ||||||||||| ||||| |||||||||||||||||| ||||||||| ||||||||    
T  19219119 cttctaagaaccattgatcttcaatcttcatatccttgatccttcatgtgatgtc 19219173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 55 - 214
Target Start/End: Original strand, 26387355 - 26387517
Alignment:
Q  55 ccttgaagctcttaatgcttgacccttgccttgtaccactag-ttttctgaat-aatacaagagtgtgcaagagtctctatttatagtgcatgattactt 152  Q
    ||||||||||||| || || |||||||||| |||| || ||| |||||||||| |||  ||||||| | |||  | | |||||||| ||||| |||||||    
T  26387355 ccttgaagctcttgattctcgacccttgccatgtatcagtagcttttctgaatgaatgaaagagtgagtaaggatatatatttataatgcatcattactt 26387454  T
Q  153 aggggttaagagagtga-aaatagggtttttccaccaaaaacggcttggaaaacaagcaaaca 214  Q
     ||||||||| | |  | ||||||| |||||||||||||||| | ||||||||| ||||||||    
T  26387455 gggggttaaggggggtagaaataggttttttccaccaaaaacagtttggaaaactagcaaaca 26387517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 369 - 410
Target Start/End: Complemental strand, 28422647 - 28422606
Alignment:
Q  369 attgaacttcaatcttcatatcctcgatccttcacgtgatgt 410  Q
    ||||||||||||||||||||||||| ||||||||||||||||    
T  28422647 attgaacttcaatcttcatatcctcaatccttcacgtgatgt 28422606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 14280791 - 14280839
Alignment:
Q  4 caatagaaaaacataccctagagagaacaagagaatgatggagatcctc 52  Q
    ||||||||||||||||||||||||||||||||| | |||| ||||||||    
T  14280791 caatagaaaaacataccctagagagaacaagaggaggatgtagatcctc 14280839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 245 - 336
Target Start/End: Complemental strand, 26298069 - 26297978
Alignment:
Q  245 gcatgaggcatcccctcttgcgcaaattctgcagttttcgaccatttttcaagcgttcttctatcttgcgatgtcttggaacttcaaatgaa 336  Q
    ||||||| || |||||| || ||||||||| || ||||  ||  ||||||| ||||||| ||||||||| ||| ||||||||||||||||||    
T  26298069 gcatgagacaacccctcatgtgcaaattcttcaattttttactctttttcatgcgttctcctatcttgcaatgccttggaacttcaaatgaa 26297978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 284 - 357
Target Start/End: Original strand, 27374274 - 27374347
Alignment:
Q  284 gaccatttttcaagcgttcttctatcttgcgatgtcttggaacttcaaatgaagtttcttcactttgtattgtc 357  Q
    |||| |||||||||||||||||| ||||| ||   |||||| ||| ||||||| |||||||||| |||||||||    
T  27374274 gaccctttttcaagcgttcttctgtcttgtgacaccttggatctttaaatgaattttcttcactctgtattgtc 27374347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 8401903 - 8401967
Alignment:
Q  1 aaacaatagaaaaacataccctagagagaacaagagaatgatggagatcctcgtccttgaagctc 65  Q
    |||||||| |||||||||||||||||| |||||||| | |||| ||||||||  || ||||||||    
T  8401903 aaacaatataaaaacataccctagagataacaagaggaggatgaagatcctctgccatgaagctc 8401967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 375 - 411
Target Start/End: Original strand, 8402478 - 8402514
Alignment:
Q  375 cttcaatcttcatatcctcgatccttcacgtgatgtc 411  Q
    ||||||||||||||||||||||||||||| |||||||    
T  8402478 cttcaatcttcatatcctcgatccttcacttgatgtc 8402514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 320 - 360
Target Start/End: Complemental strand, 18474423 - 18474383
Alignment:
Q  320 ttggaacttcaaatgaagtttcttcactttgtattgtcttc 360  Q
    ||||||||| ||||||| |||||||||||||||||||||||    
T  18474423 ttggaacttgaaatgaattttcttcactttgtattgtcttc 18474383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 357 - 409
Target Start/End: Original strand, 19263815 - 19263867
Alignment:
Q  357 cttctaagaactattgaacttcaatcttcatatcctcgatccttcacgtgatg 409  Q
    |||||| |||| ||||| |||||||||||||||||| ||||||||| ||||||    
T  19263815 cttctatgaaccattgatcttcaatcttcatatccttgatccttcatgtgatg 19263867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 22488367 - 22488414
Alignment:
Q  1 aaacaatagaaaaacataccctagagagaacaagagaatgatggagat 48  Q
    ||||||| |||||||||| ||||||||||||||||| | |||||||||    
T  22488367 aaacaattgaaaaacatatcctagagagaacaagaggaggatggagat 22488414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 376 - 411
Target Start/End: Complemental strand, 26297934 - 26297899
Alignment:
Q  376 ttcaatcttcatatcctcgatccttcacgtgatgtc 411  Q
    |||||||||||||||||||||||||||| |||||||    
T  26297934 ttcaatcttcatatcctcgatccttcacttgatgtc 26297899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 175 - 221
Target Start/End: Original strand, 22493445 - 22493491
Alignment:
Q  175 gggtttttccaccaaaaacggcttggaaaacaagcaaacatcacttc 221  Q
    ||||||||||||||||||| | || ||||||||| ||||||||||||    
T  22493445 gggtttttccaccaaaaacagtttcgaaaacaagaaaacatcacttc 22493491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 107 - 165
Target Start/End: Original strand, 22991074 - 22991132
Alignment:
Q  107 aatacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaagaga 165  Q
    |||| ||||||||||||  ||||| ||||||||||||| |||||||| |||||| ||||    
T  22991074 aataaaagagtgtgcaatggtctcgatttatagtgcatcattacttatgggttacgaga 22991132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 322 - 360
Target Start/End: Complemental strand, 25883354 - 25883316
Alignment:
Q  322 ggaacttcaaatgaagtttcttcactttgtattgtcttc 360  Q
    ||||||| ||||||| |||||||||||||||||||||||    
T  25883354 ggaacttgaaatgaattttcttcactttgtattgtcttc 25883316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 13911908 - 13911871
Alignment:
Q  1 aaacaatagaaaaacataccctagagagaacaagagaa 38  Q
    ||||||||||||| ||||||||| ||||||||||||||    
T  13911908 aaacaatagaaaaccataccctatagagaacaagagaa 13911871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 300 - 360
Target Start/End: Original strand, 8402392 - 8402452
Alignment:
Q  300 ttcttctatcttgcgatgtcttggaacttcaaatgaagtttcttcactttgtattgtcttc 360  Q
    |||||| ||||||| ||||| |||||||| |||||||  ||||||||||| |||| |||||    
T  8402392 ttcttccatcttgcaatgtcatggaacttgaaatgaatgttcttcactttatattttcttc 8402452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 316 - 360
Target Start/End: Original strand, 19219068 - 19219112
Alignment:
Q  316 tgtcttggaacttcaaatgaagtttcttcactttgtattgtcttc 360  Q
    |||||||||| || ||||||| ||| |||||||||||||||||||    
T  19219068 tgtcttggaatttgaaatgaattttattcactttgtattgtcttc 19219112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 97; Significance: 2e-47; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 21549265 - 21549058
Alignment:
Q  1 aaacaatagaaaaacataccctagagagaacaagagaatgatggagatcctcgtccttgaagctcttaatgcttgacccttgccttgtaccactagtttt 100  Q
    |||||||||||||||||||||||||||||||||||| | |||||||||||||  |||||||| || | |||||||||| ||| |||||||  |||| |||    
T  21549265 aaacaatagaaaaacataccctagagagaacaagaggaggatggagatcctctgccttgaagatcctgatgcttgaccattgacttgtactgctagattt 21549166  T
Q  101 ctgaat-aatacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaagagagtgaaaatagggtttttccaccaaaaacggcttg 199  Q
     ||||| |||| ||||||||||||| |||| |||||||| |||||||||||||  ||||||||| ||| |||||| |||||||||||||| ||| |||||    
T  21549165 ttgaatgaataaaagagtgtgcaagggtctttatttatattgcatgattacttttgggttaagaaagtaaaaata-ggtttttccaccaataacagcttg 21549067  T
Q  200 gaaaacaag 208  Q
     ||||||||    
T  21549066 aaaaacaag 21549058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 52270720 - 52270935
Alignment:
Q  1 aaacaatagaaaaacataccctagagagaacaagagaatgatggagatcctcgtccttgaagctcttaatgcttgacccttgccttgtaccactagtttt 100  Q
    |||||||||||||||||   |||||||||||||||| | |||| |||||||   || |||||||| | ||||||| ||||||||||||||| |||| |||    
T  52270720 aaacaatagaaaaacatcatctagagagaacaagaggaggatgaagatcctttgccgtgaagctcctgatgcttggcccttgccttgtaccgctagcttt 52270819  T
Q  101 ctgaat-aatacaagagtgtgcaa-------gagtctctatttatagtgcatgattacttaggggttaagagagtgaaaatagggtttttccaccaaaaa 192  Q
    |||||| |||| |||| |||| ||       ||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  52270820 ctgaatgaataaaagattgtgtaacagtgaagagtctctatttatattgcatgattacttaggggttaagagagtgaaaatagagcttttccaccaaaaa 52270919  T
Q  193 cggcttggaaaacaag 208  Q
    |  |||| ||||||||    
T  52270920 caacttgaaaaacaag 52270935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 240 - 403
Target Start/End: Original strand, 26854102 - 26854274
Alignment:
Q  240 ggggcgcatgaggcatcccctcttgcgcaaattctgcagttttcgaccatttttcaagcgttcttctatcttgcgatgtcttggaacttcaaatgaagtt 339  Q
    |||| ||||||||||||||||| || || || |||||| ||||||||||||||||| | ||||||| ||||||| ||| |||||||||||||||||| ||    
T  26854102 ggggtgcatgaggcatcccctcatgtgcgaactctgcaattttcgaccatttttca-gtgttcttccatcttgcaatgccttggaacttcaaatgaattt 26854200  T
Q  340 tcttcactttgtattg----------tcttctaagaactattgaacttcaatcttcatatcctcgatccttcac 403  Q
    ||||||||||||||||          |||||||||||| |||||||||||||||||||||| | ||||||||||    
T  26854201 tcttcactttgtattgtcttcaaatatcttctaagaaccattgaacttcaatcttcatatcattgatccttcac 26854274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 25778352 - 25778148
Alignment:
Q  1 aaacaatagaaaaacataccctagagagaacaagagaatgatggagatcctcgtccttgaagctcttaatgcttgacccttgccttgtaccactagtttt 100  Q
    ||||||||||||||||||||||||||||||| |||| | ||||||||| ||| ||||||||||||   ||| ||||||||||||||||||   ||  |||    
T  25778352 aaacaatagaaaaacataccctagagagaacgagaggaggatggagatgctcttccttgaagctccagatgtttgacccttgccttgtactgttatcttt 25778253  T
Q  101 ctgaat-aatacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaagagagtgaaaatagggtttttccaccaaaaacggcttg 199  Q
     | ||| |||| ||||||||||||  ||||||||||||||||||| |||||||| | ||||| ||||  |||||| || |||| ||| ||||||| ||||    
T  25778252 ataaatgaataaaagagtgtgcaaaggtctctatttatagtgcattattacttaagagttaatagaggaaaaataagggttttgcacaaaaaacgacttg 25778153  T
Q  200 gaaaa 204  Q
     ||||    
T  25778152 aaaaa 25778148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 23506392 - 23506183
Alignment:
Q  1 aaacaatagaaaaacataccctagagagaacaagagaatgatggagatcctcgtccttgaagctcttaatgcttgacccttgccttgtaccactagtttt 100  Q
    ||||||||||||||||| | |||||||||| ||||| | |||||||||||    ||| |||||||||||||||  || ||||||||||||  |||  |||    
T  23506392 aaacaatagaaaaacattctctagagagaataagaggaggatggagatccgatgcctcgaagctcttaatgctaaacacttgccttgtactgctaacttt 23506293  T
Q  101 ctgaat-aatacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaagagagtgaaaatagggtttttccaccaaaaacggcttg 199  Q
    |||||  |||| ||   ||| |||| ||||||||||||||||||| ||||||||||| | ||||||||||||||||  ||| |||||||| |||  ||||    
T  23506292 ctgaaagaatagaattctgtccaagggtctctatttatagtgcattattacttagggctcaagagagtgaaaatagattttatccaccaagaacttcttg 23506193  T
Q  200 gaaaacaagc 209  Q
    ||||||||||    
T  23506192 gaaaacaagc 23506183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 11 - 192
Target Start/End: Original strand, 25665296 - 25665480
Alignment:
Q  11 aaaacataccctagagagaacaagagaatgatggagatcctcgtccttgaagctcttaatgcttgacccttgccttgtaccactagttttctgaat-aat 109  Q
    |||||||| ||||||||||||||||| | |||||||||| ||  ||||||||||| | |||||||||||||| |||||||  |||| ||| ||||| |||    
T  25665296 aaaacatatcctagagagaacaagaggaggatggagatcatctgccttgaagctcatgatgcttgacccttgtcttgtactgctagctttatgaatgaat 25665395  T
Q  110 acaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaagagagtgaaaataggg--tttttccaccaaaaa 192  Q
      || | |||||||| ||||||||||| |||||||| ||||||| ||||| | || ||||||||||||  |||||||||||||||    
T  25665396 taaaaattgtgcaagggtctctatttacagtgcatgcttacttatgggttcaaagtgtgaaaatagggtttttttccaccaaaaa 25665480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 55 - 217
Target Start/End: Original strand, 26853873 - 26854036
Alignment:
Q  55 ccttgaagctcttaatgcttgacccttgccttgtaccactagttttctgaat-aatacaagagtgtgcaagagtctctatttatagtgcatgattactta 153  Q
    ||||||||||||| ||||||||| |||||||  ||    ||| ||||||||| |||| || ||||| |||| |||||||||||||||| || ||||||||    
T  26853873 ccttgaagctcttgatgcttgactcttgcctcatattgttagctttctgaatgaataaaatagtgttcaagggtctctatttatagtgtatcattactta 26853972  T
Q  154 ggggttaagagagtgaaaatagggtttttccaccaaaaacggcttggaaaacaagcaaacatca 217  Q
    |||||| ||| ||||||||||| ||||||||||||||||||||| ||| ||||  |||||||||    
T  26853973 ggggttgagatagtgaaaatagtgtttttccaccaaaaacggctgggagaacagacaaacatca 26854036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 25731093 - 25730937
Alignment:
Q  1 aaacaatagaaaaacataccctagagagaacaagagaatgatggagatcctcgtccttgaagctcttaatgcttgacccttgccttgtaccactagtttt 100  Q
    |||||||| ||||||||||||||||||||||  ||| | |||| |||||||| ||||| |||||| | ||| || |||||||||||||||   ||  |||    
T  25731093 aaacaatataaaaacataccctagagagaacgggaggaggatgaagatcctcttcctttaagctcctgatgttttacccttgccttgtactgttatcttt 25730994  T
Q  101 ctgaat-aatacaagagtgtgcaagagtctctatttatagtgcatgattacttaggg 156  Q
     | ||| |||| |||||| |||||  ||||||||||||||||||| |||||||||||    
T  25730993 ataaatgaataaaagagtatgcaaaggtctctatttatagtgcattattacttaggg 25730937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 34533246 - 34533082
Alignment:
Q  1 aaacaatagaaaaacataccctagagagaacaagagaatgatggagatcctcgtccttgaagctcttaatgcttgacccttgccttgtaccactagtttt 100  Q
    ||||||| |||||||||||||||||||||||||||| | |||| |||||||| |||||||| ||  | ||||||||||| ||| ||| ||   |||||||    
T  34533246 aaacaatcgaaaaacataccctagagagaacaagaggaggatgaagatcctcttccttgaaact-atgatgcttgacccgtgcattgaactgttagtttt 34533148  T
Q  101 ctgaat-aatacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaagaga 165  Q
    || ||| ||||  |  |||||||||||||||||||||||    |||||||||||| | ||||||||    
T  34533147 ctaaatgaataagaatgtgtgcaagagtctctatttatatcatatgattacttagagtttaagaga 34533082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 240 - 406
Target Start/End: Original strand, 52271027 - 52271202
Alignment:
Q  240 ggggcgcatgaggcatcccctcttgcgcaaattctgcagttttcgaccatttttcaagcgttcttctatcttgcgatgtcttggaacttcaaatgaagtt 339  Q
    ||||||||| ||||| |||||||||| | |||||  ||||||| |||| |||| |   ||||||||  |||||| ||  ||||||| || ||||||| ||    
T  52271027 ggggcgcataaggcaacccctcttgcacgaattcaacagtttttgaccctttt-cgcccgttcttccgtcttgcaattccttggaatttgaaatgaattt 52271125  T
Q  340 tcttcactttgtattgtcttc----------taagaactattgaacttcaatcttcatatcctcgatccttcacgtg 406  Q
    |||||||||||||||||||||          |||| || ||||||||||||||||||||||||||||||||||||||    
T  52271126 tcttcactttgtattgtcttcaaataccttctaagtaccattgaacttcaatcttcatatcctcgatccttcacgtg 52271202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 31314161 - 31314004
Alignment:
Q  1 aaacaatagaaaaacataccctagagagaacaagagaatgatggagatcctcgtccttgaagctcttaatgcttgacccttgccttgtaccactagtttt 100  Q
    |||||||||||||||| ||| ||||||||||||||    |||||||||||||  ||||| ||||| | ||| ||||||||  ||||||||| |||| |||    
T  31314161 aaacaatagaaaaacaaaccatagagagaacaagatggggatggagatcctctgccttgcagctc-tgatggttgaccctaaccttgtaccgctagcttt 31314063  T
Q  101 ctgaat-aatacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggt 158  Q
    |||||| |||| |||||||  |||   |||||||||||||||||| ||| |||| ||||    
T  31314062 ctgaataaataaaagagtgaacaatgatctctatttatagtgcatcattgcttaagggt 31314004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 69 - 165
Target Start/End: Original strand, 27460443 - 27460540
Alignment:
Q  69 atgcttgacccttgccttgtaccactagttttctgaat-aatacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaagaga 165  Q
    |||||||| |||||   |||||| |||||||||||||  |||| ||||||||| ||| |||||||||||||||| || ||||||||||||||||||||    
T  27460443 atgcttgatccttgtaatgtaccgctagttttctgaaagaataaaagagtgtgtaagggtctctatttatagtggatcattacttaggggttaagaga 27460540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 50047703 - 50047619
Alignment:
Q  1 aaacaatagaaaaacataccctagagagaacaagagaatgatggagatcctcgtccttgaagctcttaatgcttgacccttgcctt 86  Q
    |||||||| ||||||||||||||||||||||||||| | ||||||||||| | |||||| | ||| ||||| ||||||||||||||    
T  50047703 aaacaatataaaaacataccctagagagaacaagaggaggatggagatccccttccttggaactc-taatgtttgacccttgcctt 50047619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 279 - 359
Target Start/End: Original strand, 25665590 - 25665670
Alignment:
Q  279 ttttcgaccatttttcaagcgttcttctatcttgcgatgtcttggaacttcaaatgaagtttcttcactttgtattgtctt 359  Q
    ||||||| | |||||||| ||||||||  |||||| ||| |||||||||||||||||  ||||||||||||||||||||||    
T  25665590 ttttcgaacctttttcaatcgttcttccgtcttgcaatgccttggaacttcaaatgatttttcttcactttgtattgtctt 25665670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 289 - 360
Target Start/End: Complemental strand, 23506040 - 23505969
Alignment:
Q  289 tttttcaagcgttcttctatcttgcgatgtcttggaacttcaaatgaagtttcttcactttgtattgtcttc 360  Q
    |||||| |||||| |||| ||||||  ||||||||||||| ||||||| |||||||||||||||||||||||    
T  23506040 tttttccagcgttattctgtcttgcattgtcttggaacttgaaatgaattttcttcactttgtattgtcttc 23505969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 26658104 - 26658002
Alignment:
Q  1 aaacaatagaaaaacataccctagagagaacaagagaatgatggagatcctcgtccttgaagctcttaatgcttgacccttgccttgtaccactagtttt 100  Q
    |||||||| ||||||||||||||||||||||||||||||||  || ||| |  |||||||||||| | ||||||||||||||||||| ||  | ||| ||    
T  26658104 aaacaata-aaaaacataccctagagagaacaagagaatga-agaaatcat--tccttgaagctc-tgatgcttgacccttgccttgaactgccagtgtt 26658010  T
Q  101 ctgaataa 108  Q
    ||||||||    
T  26658009 ctgaataa 26658002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 248 - 411
Target Start/End: Complemental strand, 21548974 - 21548800
Alignment:
Q  248 tgaggcatcccctcttgcgcaaattctgcag-ttttcgaccatttttcaagcgttcttctatcttgcgatgtcttggaacttcaaatgaagtttcttcac 346  Q
    |||||||  |||||||||||||||| ||||| ||||| ||| |||||| ||| |||||   |||||  ||| |||||||||||||||||| ||| ||||     
T  21548974 tgaggcagtccctcttgcgcaaattatgcagtttttcaaccctttttctagcattctttcgtcttgtaatgccttggaacttcaaatgaatttttttcaa 21548875  T
Q  347 tttgtat----------tgtcttctaagaactattgaacttcaatcttcatatcctcgatccttcacgtgatgtc 411  Q
     ||||||          |||||||||||||| ||| | ||||||||||||||||| | || ||| ||||||||||    
T  21548874 cttgtattatcttcaaatgtcttctaagaaccatttagcttcaatcttcatatccacaattctttacgtgatgtc 21548800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 30676042 - 30675992
Alignment:
Q  1 aaacaatagaaaaacataccctagagagaacaagagaatgatggagatcct 51  Q
    |||||||||||||||||||||||||||||  ||||| | ||||||||||||    
T  30676042 aaacaatagaaaaacataccctagagagactaagaggaggatggagatcct 30675992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 14744944 - 14745102
Alignment:
Q  1 aaacaatagaaaaacataccctagagagaacaagagaatgatggagatcctcgtccttgaagctcttaatgcttgacccttgccttgtaccactagtttt 100  Q
    |||||||||||||||||| | ||||||||||||||  | |||| ||||| ||   ||||||||||   |||||||||||||||||| |||  ||||        
T  14744944 aaacaatagaaaaacatatcatagagagaacaagaagaggatgcagatcatctgtcttgaagctc-agatgcttgacccttgccttatactgctag---- 14745038  T
Q  101 ctgaataatacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaagagag 166  Q
    || | ||||  |||||||||||| | ||| || |||| || ||| |||||||||||||||||||||    
T  14745039 ctaattaat--aagagtgtgcaaaaatctttacttatggtacatcattacttaggggttaagagag 14745102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 69 - 165
Target Start/End: Complemental strand, 25126997 - 25126900
Alignment:
Q  69 atgcttgacccttgccttgtaccactagttttctgaat-aatacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaagaga 165  Q
    ||||||||||||||||||||||  |||| ||| ||||| |||| || ||||| ||||  |||||||||||| | ||| | ||||| ||||||||||||    
T  25126997 atgcttgacccttgccttgtactgctagctttttgaatgaataaaaaagtgttcaaggatctctatttataatacatcactactttggggttaagaga 25126900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 11769500 - 11769558
Alignment:
Q  1 aaacaatagaaaaacataccctagagagaacaagagaatgatggagatcctcgtccttg 59  Q
    |||||||| ||||||| ||| ||||||||| ||||| | ||||||||||||| ||||||    
T  11769500 aaacaatataaaaacacaccatagagagaaaaagaggaggatggagatcctcttccttg 11769558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 322 - 360
Target Start/End: Original strand, 11769857 - 11769895
Alignment:
Q  322 ggaacttcaaatgaagtttcttcactttgtattgtcttc 360  Q
    ||||||| ||||||| |||||||||||||||||||||||    
T  11769857 ggaacttgaaatgaattttcttcactttgtattgtcttc 11769895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 357 - 411
Target Start/End: Original strand, 18300911 - 18300965
Alignment:
Q  357 cttctaagaactattgaacttcaatcttcatatcctcgatccttcacgtgatgtc 411  Q
    ||||||||||| ||||   || |||||||||||||| ||||||||||||||||||    
T  18300911 cttctaagaaccattggtatttaatcttcatatccttgatccttcacgtgatgtc 18300965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 308 - 411
Target Start/End: Original strand, 19257655 - 19257766
Alignment:
Q  308 tcttgcgatgtcttggaacttcaaatgaagtttcttcactttgtattgtcttctaagaact--------attgaacttcaatcttcatatcctcgatcct 399  Q
    |||||| ||| ||||||| || |||| || ||||||||||||||||||||||| |||| ||         ||||  |||||||||||||||||||||| |    
T  19257655 tcttgcaatgccttggaaattgaaataaattttcttcactttgtattgtcttcaaagaccttctaagaacttgatgttcaatcttcatatcctcgatctt 19257754  T
Q  400 tcacgtgatgtc 411  Q
    ||| ||||||||    
T  19257755 tcatgtgatgtc 19257766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 23223992 - 23223890
Alignment:
Q  1 aaacaatagaaaaacataccctagagagaacaagagaatgatggagatcctcgtccttgaagctcttaatgcttgacccttgccttgtaccactagtttt 100  Q
    |||||||||||||||||||||||  |||||| |||| | |||| ||||||||  ||||| | ||| | ||||||||||||| || || | |||||| |||    
T  23223992 aaacaatagaaaaacatacccta--gagaactagaggaggatgaagatcctctgccttggaactc-tgatgcttgaccctttccgtgaatcactagcttt 23223896  T
Q  101 ctgaat 106  Q
    ||||||    
T  23223895 ctgaat 23223890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 308 - 411
Target Start/End: Complemental strand, 25126745 - 25126632
Alignment:
Q  308 tcttgcgatgtcttggaacttcaaatgaagtttcttcactttgtattgtcttc----------taagaactattgaacttcaatcttcatatcctcgatc 397  Q
    |||||| ||| |||||||||| ||||||| |||||||| |||||||||| |||          ||||||||||||| ||  | || |||||||||| |||    
T  25126745 tcttgcaatgccttggaacttgaaatgaattttcttcattttgtattgtattcaaagattttctaagaactattgatctgtagtcgtcatatcctcaatc 25126646  T
Q  398 cttcacgtgatgtc 411  Q
    ||||||||||||||    
T  25126645 cttcacgtgatgtc 25126632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 41
Target Start/End: Complemental strand, 12810771 - 12810735
Alignment:
Q  5 aatagaaaaacataccctagagagaacaagagaatga 41  Q
    ||||||||| ||||||||| |||||||||||||||||    
T  12810771 aatagaaaagcataccctaaagagaacaagagaatga 12810735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 93; Significance: 4e-45; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 3 - 214
Target Start/End: Complemental strand, 11438013 - 11437801
Alignment:
Q  3 acaatagaaaaacataccctagagagaacaagagaatgatggagatcctcgtccttgaagctcttaatgcttgacccttgccttgtaccactagttttct 102  Q
    |||||| |||||||||||||| |||||||||||||| |||||||||||||  | ||||||||| | |||||||||||||||||||||| ||||| |||||    
T  11438013 acaataaaaaaacataccctacagagaacaagagaaggatggagatcctctgctttgaagctcatgatgcttgacccttgccttgtactactagctttct 11437914  T
Q  103 gaat-aatacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaagagagtgaaaatagggtttttccaccaaaaacggcttgga 201  Q
     ||| |||| || |||||| ||  |||| |||||||  ||||| |||||||||||||||| |||||||||||| | ||||||||||||||    ||||||    
T  11437913 aaatgaataaaatagtgtgtaatggtctatatttatgatgcatcattacttaggggttaacagagtgaaaatatgatttttccaccaaaattaccttgga 11437814  T
Q  202 aaacaagcaaaca 214  Q
    |||||| ||||||    
T  11437813 aaacaaacaaaca 11437801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 18771548 - 18771340
Alignment:
Q  1 aaacaatagaaaaacataccctagagagaacaagagaatgatggagatcctcgtccttgaagctcttaatgcttgacccttgccttgtaccactagtttt 100  Q
    |||||||||||||| |||| ||||||||||||| |  | |||||||||| ||  ||||||||||| | |||||||||| |||||||||| |  | | |||    
T  18771548 aaacaatagaaaaagatactctagagagaacaaaatgaggatggagatcatctaccttgaagctcctgatgcttgaccattgccttgtatcgatggattt 18771449  T
Q  101 ctgaat-aatacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaagagagtgaaaatagggtttttccaccaaaaacggcttg 199  Q
    || ||| |||| ||||||||||||| ||||||||| | |||| ||||||||| |||| |||||||||||||||||||| |||||||||||||||   |||    
T  18771448 ctaaatgaataaaagagtgtgcaagggtctctattaagagtgtatgattactgagggattaagagagtgaaaataggggttttccaccaaaaacatattg 18771349  T
Q  200 gaaaacaag 208  Q
    |||||||||    
T  18771348 gaaaacaag 18771340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 30850552 - 30850731
Alignment:
Q  1 aaacaatagaaaaacataccctagagagaacaagagaatgatggagatcctcgtccttgaagctcttaatgcttgacccttgccttgtaccactagtttt 100  Q
    ||||||||||||||||||||||||||||||||| || | |||||||||||||  |||| || ||||| ||| ||||||||||||||||||| |||| |||    
T  30850552 aaacaatagaaaaacataccctagagagaacaataggaggatggagatcctctgccttaaatctctt-atgtttgacccttgccttgtaccgctagcttt 30850650  T
Q  101 ctgaat-aatacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaagagagtgaaaatagggttttt 182  Q
    |||||| |||| |||| | |||| | ||||||||||| | |  || |||||||||||||||||||| ||||| |||| |||||    
T  30850651 ctgaatgaataaaagaatttgcatgggtctctatttacaat-aatcattacttaggggttaagaga-tgaaattaggcttttt 30850731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 240 - 400
Target Start/End: Complemental strand, 11437753 - 11437583
Alignment:
Q  240 ggggcgcatgaggcatcccctcttgcgcaaattctgcagttttcgaccatttttcaagcgttcttctatcttgcgatgtcttggaacttcaaatgaagtt 339  Q
    ||||| ||||||| | ||||||||| |||||||||| ||||||||| | ||||||||| |||||||  |||||| |||  ||||||||||||||||| |     
T  11437753 ggggcacatgaggtaacccctcttgtgcaaattctgtagttttcgatcctttttcaagtgttcttccgtcttgcaatgctttggaacttcaaatgaatta 11437654  T
Q  340 tcttcactttgtattgt----------cttctaagaactattgaacttcaatcttcatatcctcgatcctt 400  Q
    |||||||| ||||||||          ||||||||||| ||||||||||||| |||||||||| |||||||    
T  11437653 tcttcactctgtattgtcttcaaatgtcttctaagaaccattgaacttcaattttcatatccttgatcctt 11437583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 29 - 174
Target Start/End: Complemental strand, 30544319 - 30544171
Alignment:
Q  29 aacaagagaatgatggagatcctcgtccttgaagctcttaatgcttgacccttgccttgtaccactag--ttttctgaat-aatacaagagtgtgcaaga 125  Q
    |||||||| | |||| |||||||   ||||||||| | || || ||||| ||||||||| ||||||||  |||||| ||| |||| ||||||||||||      
T  30544319 aacaagaggaggatgaagatcctatgccttgaagcgcctattgtttgactcttgccttgaaccactagccttttctaaatgaataaaagagtgtgcaatg 30544220  T
Q  126 gtctctatttatagtgcatgattacttaggggttaagagagtgaaaata 174  Q
     ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  30544219 atctctatttatagtgtatgattacttaggggttaagagagtgaaaata 30544171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 24927354 - 24927565
Alignment:
Q  1 aaacaatagaaaaacataccctagagagaacaagagaatgatggagatcctcgtccttgaagctcttaatgcttgacccttgccttgtaccactagtttt 100  Q
    ||||||||||||||||||||||| |||||||||| | | |||| ||||||||  ||||||||||| |  || |||||  |||||||| |||||||  | |    
T  24927354 aaacaatagaaaaacataccctaaagagaacaaggggaggatgaagatcctccaccttgaagctcctggtgtttgacatttgccttggaccactaactat 24927453  T
Q  101 ctgaat-aatacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaagagagtgaaaatagggtttttccaccaaaaacggcttg 199  Q
     ||||| |||| ||   |||||||| ||||||||||||| |  |||||||||||||||||||||||  ||||| | |||||| |   |||||||||||      
T  24927454 atgaatgaata-aaatttgtgcaagggtctctatttatattagatgattacttaggggttaagagaaagaaaacatggttttccattcaaaaacggctaa 24927552  T
Q  200 gaaaacaagcaaa 212  Q
    ||||||| |||||    
T  24927553 gaaaacatgcaaa 24927565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 247 - 411
Target Start/End: Original strand, 13583304 - 13583482
Alignment:
Q  247 atgaggcatcccctcttgcgcaaattctgcagttttcgaccatttttcaagcgttcttctatcttgcgatgtcttggaacttcaaatgaagtttctt--- 343  Q
    |||||||| |||||| || || |||| || ||||||||| | |||||| ||||||||||  |||||| ||  |||||||||||||||||| ||| ||       
T  13583304 atgaggcagcccctcatgtgcgaattatgtagttttcgatcttttttccagcgttcttccgtcttgcaataccttggaacttcaaatgaatttttttttt 13583403  T
Q  344 -cactttgtattgtctt----------ctaagaactattgaacttcaatcttcatatcctcgatccttcacgtgatgtc 411  Q
     ||||||||||||||||          |||||||| |||||||||||||| |||||||||||||||||||| |||||||    
T  13583404 tcactttgtattgtcttcaaatatcttctaagaaccattgaacttcaatcatcatatcctcgatccttcacttgatgtc 13583482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 13583111 - 13583216
Alignment:
Q  1 aaacaatagaaaaacataccctagagagaacaagagaatgatggagatcctcgtccttgaagctcttaatgcttgacccttgccttgtaccactagtttt 100  Q
    ||||||| ||||||||||||||| | |||| |||||  || |||||||||||  ||||||||||||| ||| ||||||||||||||||||| |||| |||    
T  13583111 aaacaatggaaaaacataccctacaaagaataagagggtggtggagatcctccgccttgaagctcttgatggttgacccttgccttgtacctctagcttt 13583210  T
Q  101 ctgaat 106  Q
     |||||    
T  13583211 atgaat 13583216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 240 - 408
Target Start/End: Complemental strand, 30544095 - 30543916
Alignment:
Q  240 ggggcgcatgaggcatcccctcttgcgcaaattctgcagttttcgaccatttttcaagcgttcttctatcttgcgatgtcttggaacttcaaatgaagtt 339  Q
    ||||| ||||||||| |||||| ||| | | ||| ||||||||||||| |||||||  | ||||||   ||||| ||| |||||||||| ||||||| ||    
T  30544095 ggggcacatgaggcaacccctcatgcacgatttcagcagttttcgaccctttttcactcattcttccgccttgcaatgccttggaacttgaaatgaattt 30543996  T
Q  340 tcttcactttgtattgtct-------tct----aagaactattgaacttcaatcttcatatcctcgatccttcacgtgat 408  Q
    |||||||||| ||||||||       |||    |||||| ||||||||||||||||||||||||| |||||||| |||||    
T  30543995 tcttcactttatattgtctttaaatatcttttaaagaaccattgaacttcaatcttcatatcctcaatccttcatgtgat 30543916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 55 - 174
Target Start/End: Complemental strand, 18786245 - 18786125
Alignment:
Q  55 ccttgaagctcttaatgcttgacccttgccttgtaccactagttttctgaat-aatacaagagtgtgcaagagtctctatttatagtgcatgattactta 153  Q
    ||||||||||| | |||||||||| || |||||||||  | | ||||| ||| |||| || |||||||||  ||||| ||| |||||| |||||||||||    
T  18786245 ccttgaagctcctgatgcttgaccatttccttgtaccgatggctttctaaatgaataaaaaagtgtgcaaaggtctcaattaatagtgtatgattactta 18786146  T
Q  154 ggggttaagagagtgaaaata 174  Q
    ||| |||||||||||||||||    
T  18786145 gggattaagagagtgaaaata 18786125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 14184553 - 14184463
Alignment:
Q  1 aaacaatagaaaaacataccctagagaga--acaagagaatgatggagatcctcgtccttgaagctcttaatgcttgacccttgccttgta 89  Q
    ||||||||||||| |||||||||||||||  | ||||| | |||||||||| ||  ||||||||||||| |||||||||| ||||||||||    
T  14184553 aaacaatagaaaatcataccctagagagagaataagaggaggatggagatcttctaccttgaagctcttgatgcttgaccattgccttgta 14184463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 105
Target Start/End: Complemental strand, 29292453 - 29292366
Alignment:
Q  18 accctagagagaacaagagaatgatggagatcctcgtccttgaagctcttaatgcttgacccttgccttgtaccactagttttctgaa 105  Q
    ||||||||||||||||||||||||||  |||| || |||||||||||| | ||| |||| | |||||||||||| |||  ||||||||    
T  29292453 accctagagagaacaagagaatgatgctgatcttcttccttgaagctcctgatgtttgatcattgccttgtacctctaactttctgaa 29292366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 268 - 403
Target Start/End: Complemental strand, 5154063 - 5153918
Alignment:
Q  268 aaattctgcagttttcgaccatttttcaagcgttcttctatcttgcgatgtcttggaacttcaaatgaagtttcttcactttgtattgtcttctaagaac 367  Q
    ||||| ||||||||||| || |||||| ||| ||||||  |||||| |||||||||||||| ||||||| ||| ||||  || |||||||||| || | |    
T  5154063 aaattttgcagttttcgtccctttttcgagcattcttccgtcttgcaatgtcttggaacttgaaatgaattttattcatgttatattgtcttcaaaaacc 5153964  T
Q  368 t----------attgaacttcaatcttcatatcctcgatccttcac 403  Q
    |          ||||| |||||||||||||||||||||||||||||    
T  5153963 ttccaataatcattgatcttcaatcttcatatcctcgatccttcac 5153918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 10 - 161
Target Start/End: Complemental strand, 28075096 - 28074945
Alignment:
Q  10 aaaaacataccctagagagaacaagagaatgatggagatcctcgtccttgaagctcttaatgcttgacccttgccttgtaccactagttttctgaat-aa 108  Q
    |||||||||||||||  |||||||||| | ||| |||||||||  || | ||| | | | || |||||||||| ||| |||  ||||  |||||||| ||    
T  28075096 aaaaacataccctagtaagaacaagaggaggatagagatcctctgccataaagttatga-tgtttgacccttgtcttatactgctagccttctgaatgaa 28074998  T
Q  109 tacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaa 161  Q
    || || ||||| |||  ||||||||||||||||||| ||||||||||||||||    
T  28074997 taaaatagtgtacaaaggtctctatttatagtgcataattacttaggggttaa 28074945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 5 - 87
Target Start/End: Original strand, 22892743 - 22892821
Alignment:
Q  5 aatagaaaaacataccctagagagaacaagagaatgatggagatcctcgtccttgaagctcttaatgcttgacccttgccttg 87  Q
    |||||||||||||||||||||||||||||||||| ||  || |||||  |||||||| ||| | |||||||||||||||||||    
T  22892743 aatagaaaaacataccctagagagaacaagagaagga-agaaatcct--tccttgaaactc-tgatgcttgacccttgccttg 22892821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 357 - 408
Target Start/End: Complemental strand, 29291976 - 29291925
Alignment:
Q  357 cttctaagaactattgaacttcaatcttcatatcctcgatccttcacgtgat 408  Q
    ||||||||||| ||||| ||||||| |||||||||||||| |||||||||||    
T  29291976 cttctaagaaccattgatcttcaatattcatatcctcgattcttcacgtgat 29291925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 23876560 - 23876395
Alignment:
Q  1 aaacaatagaaaaacataccctagagagaacaagagaatgatggag----atcctcgtccttgaagctcttaatgcttgacccttgccttgtaccactag 96  Q
    |||||||||||||||||||| |||| |||||||||| |||| ||||    |||||    ||||||| ||| | || || || |||||||| |||| ||||    
T  23876560 aaacaatagaaaaacataccgtagatagaacaagaggatga-ggaggacaatcctatagcttgaagttctga-tgtttaacacttgccttataccgctag 23876463  T
Q  97 ttttctgaataa-tacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaaga 163  Q
     || || ||||| || |||| |||| ||| ||||||||||||||||||| |||||||| |||||||||    
T  23876462 cttgctaaataaataaaagaatgtgtaagtgtctctatttatagtgcatcattacttaagggttaaga 23876395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 357 - 411
Target Start/End: Original strand, 28292009 - 28292063
Alignment:
Q  357 cttctaagaactattgaacttcaatcttcatatcctcgatccttcacgtgatgtc 411  Q
    ||||||||||| ||| | ||||||||||||||||||| |||||||| ||||||||    
T  28292009 cttctaagaaccattaatcttcaatcttcatatcctcaatccttcatgtgatgtc 28292063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 276 - 411
Target Start/End: Complemental strand, 32239585 - 32239440
Alignment:
Q  276 cagttttcgaccatttttcaagcgttcttctatcttgcgatgtcttggaacttcaaatgaagtttcttcactttgtattgt----------cttctaaga 365  Q
    ||||||| |||| ||||||   |||| |||| |||||| ||| |||| ||||| ||||||| |||||||||||| ||||||          ||| ||| |    
T  32239585 cagtttttgaccctttttcgcccgtttttctgtcttgcaatgccttgaaacttgaaatgaattttcttcactttttattgtctttaagaaccttataaaa 32239486  T
Q  366 actattgaacttcaatcttcatatcctcgatccttcacgtgatgtc 411  Q
    || ||||||||||||||||||||||||  |||||||| ||||||||    
T  32239485 accattgaacttcaatcttcatatcctttatccttcatgtgatgtc 32239440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 69 - 165
Target Start/End: Original strand, 5569737 - 5569833
Alignment:
Q  69 atgcttgacccttgccttgtaccactagttttctgaat-aatacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaagaga 165  Q
    |||||||| |||||||||| |||  ||||||||||||| |||| ||| ||||| ||| |||||||||||||    |||||||||||||| ||||||||    
T  5569737 atgcttgatccttgccttgaaccgttagttttctgaatgaataaaagtgtgtg-aagggtctctatttataacaaatgattacttagggtttaagaga 5569833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 319 - 360
Target Start/End: Original strand, 22894392 - 22894433
Alignment:
Q  319 cttggaacttcaaatgaagtttcttcactttgtattgtcttc 360  Q
    |||||||||||||| ||| |||||||||||||||||||||||    
T  22894392 cttggaacttcaaaagaattttcttcactttgtattgtcttc 22894433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 361 - 409
Target Start/End: Original strand, 6888105 - 6888153
Alignment:
Q  361 taagaactattgaacttcaatcttcatatcctcgatccttcacgtgatg 409  Q
    ||||||| ||||| |||||||||||||||||||||| || |||||||||    
T  6888105 taagaaccattgatcttcaatcttcatatcctcgatactgcacgtgatg 6888153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 165
Target Start/End: Complemental strand, 24120866 - 24120711
Alignment:
Q  10 aaaaacataccctagagagaacaagagaatgatggagatcctcgtccttgaagctcttaatgcttgacccttgccttgtaccactagttttctgaat-aa 108  Q
    ||||| ||||| ||||||||||||||| | ||| |||||||||  ||||| | ||| | ||||||| |||||| |||  |||  ||| ||||||||| |     
T  24120866 aaaaaaataccgtagagagaacaagaggaggatagagatcctctgccttggaactc-tgatgcttggcccttggcttaaaccggtagctttctgaatcat 24120768  T
Q  109 tacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaagaga 165  Q
    || ||| ||||||||  ||||||||||||||   |||||||||||| | ||||||||    
T  24120767 taaaagtgtgtgcaatggtctctatttatagcatatgattacttagtgtttaagaga 24120711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 126 - 165
Target Start/End: Original strand, 6887828 - 6887867
Alignment:
Q  126 gtctctatttatagtgcatgattacttaggggttaagaga 165  Q
    ||||||||||||||||||| ||||||||| ||||||||||    
T  6887828 gtctctatttatagtgcatcattacttagaggttaagaga 6887867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 303 - 403
Target Start/End: Original strand, 30850944 - 30851054
Alignment:
Q  303 ttctatcttgcgatgtcttggaacttcaaatgaagtttcttcactttgtattgtcttc----------taagaactattgaacttcaatcttcatatcct 392  Q
    ||||||||||| ||| |||||||||| |||| || ||||||||||||||||| | |||          |||||||  |||| ||||||||||||||||||    
T  30850944 ttctatcttgcaatgacttggaacttgaaattaattttcttcactttgtattatattcaaagacattctaagaaccgttgatcttcaatcttcatatcct 30851043  T
Q  393 cgatccttcac 403  Q
     ||||||||||    
T  30851044 tgatccttcac 30851054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 23893713 - 23893615
Alignment:
Q  1 aaacaatagaaaaacataccctagagagaacaagagaatgatggagatcctcgtccttgaagctcttaatgcttgacccttgccttgtaccactagtttt 100  Q
    ||||||||||| ||| ||| ||||||||||||| || | ||||||||||||   ||||||| ||| |||| ||||||||||||| || ||| |||| |||    
T  23893713 aaacaatagaataacctactctagagagaacaataggaggatggagatcct--gccttgaaactc-taattcttgacccttgccctgaaccgctagcttt 23893617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 300 - 393
Target Start/End: Complemental strand, 31436742 - 31436643
Alignment:
Q  300 ttcttctatcttgcgatgtcttggaacttcaaatgaagtttcttcactttgtattgtctt-------ctaagaactattgaacttcaatcttcatatcct 392  Q
    ||||||| |||||| ||| |||||||||| |||| || ||| ||||||||||||||||||       |||||||| ||||| | ||||||||||||||||    
T  31436742 ttcttctgtcttgcaatgccttggaacttgaaat-aatttttttcactttgtattgtcttcaaatacctaagaaccattgatcgtcaatcttcatatcct 31436644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 13305015 - 13304978
Alignment:
Q  1 aaacaatagaaaaacataccctagagagaacaagagaa 38  Q
    |||||||||||||| |||||||||||||||||| ||||    
T  13305015 aaacaatagaaaaatataccctagagagaacaaaagaa 13304978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 212
Target Start/End: Complemental strand, 14184443 - 14184326
Alignment:
Q  97 ttttctgaat-aatacaagagtgtgcaagagtctctatttatagtgcatgattactta-ggggttaagagagtgaaaatagggtttttccaccaaaaacg 194  Q
    |||||||||| |||| ||| |||||||||  |||||||||||||   ||||||||||| ||||||||||||  ||||| ||| |||| |    |||| |     
T  14184443 ttttctgaatcaataaaagtgtgtgcaaggttctctatttatagcagatgattacttagggggttaagagaaagaaaacaggattttccattgaaaagca 14184344  T
Q  195 gcttggaaaacaagcaaa 212  Q
    ||||||||||||||||||    
T  14184343 gcttggaaaacaagcaaa 14184326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 12957124 - 12957076
Alignment:
Q  1 aaacaatagaaaaacataccctagagagaacaagagaatgatggagatc 49  Q
    ||||| ||||||||||||||||| |||||||||||  |||||| |||||    
T  12957124 aaacattagaaaaacataccctatagagaacaagatgatgatgaagatc 12957076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 79; Significance: 9e-37; HSPs: 35)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 5 - 174
Target Start/End: Original strand, 18281714 - 18281884
Alignment:
Q  5 aatagaaaaacataccctagagagaacaagagaatgatggagatcctcgtccttgaagctcttaatgcttgacccttgccttgtaccactagttttctga 104  Q
    |||||||||| ||||||||||||||||||||| | ||||||| |||||  ||||||||||| | ||| |||||  |||||||| ||  |||| |||||||    
T  18281714 aatagaaaaatataccctagagagaacaagaggacgatggaggtcctctaccttgaagctcctgatgtttgacgtttgccttgcactgctagctttctga 18281813  T
Q  105 at-aatacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaagagagtgaaaata 174  Q
    || || | ||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||| |||||    
T  18281814 atgaagaaaagagtgtgcaagggtcactatttatattgcatgattacttaggggttaagagagtggaaata 18281884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 54 - 226
Target Start/End: Original strand, 23157337 - 23157510
Alignment:
Q  54 tccttgaagctcttaatgcttgacccttgccttgtaccactagttttctgaat-aatacaagagtgtgcaagagtctctatttatagtgcatgattactt 152  Q
    ||||||||||||| | |||||||||||||||||||||  | |  ||||||||| |||| || |||||||||| |||||| |||||| |||||||||||||    
T  23157337 tccttgaagctctga-tgcttgacccttgccttgtactgccaactttctgaatgaataaaatagtgtgcaagggtctctttttataatgcatgattactt 23157435  T
Q  153 aggggttaagagagtg-aaaatagggtttttccaccaaaaacggcttggaaaacaagcaaacatcacttcctccc 226  Q
    |||||||||||||||| |||||| || ||||||||| ||||| |||||||||||||| ||||| |||||| ||||    
T  23157436 aggggttaagagagtgaaaaatatgggttttccacctaaaacagcttggaaaacaagaaaacaacacttcttccc 23157510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 16622137 - 16622300
Alignment:
Q  1 aaacaatagaaaaacataccctagagagaacaagagaatgatggagatcctcgtccttgaagctcttaatgcttgacccttgccttgtaccactagtttt 100  Q
    ||||||||||||||||||||||| |||||||||||||| |||||||| ||||   |||| | ||| ||||||||||| ||||||||| |||||||| |||    
T  16622137 aaacaatagaaaaacataccctaaagagaacaagagaaggatggagaccctcagtcttggaactc-taatgcttgactcttgccttgaaccactagcttt 16622235  T
Q  101 ctgaat-aatacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaagag 164  Q
     ||||| |||| |||  |||||||||||||||||||||| || |||||||||||| | |||||||    
T  16622236 atgaataaataaaagtatgtgcaagagtctctatttataatgtatgattacttagagtttaagag 16622300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 115 - 237
Target Start/End: Complemental strand, 25368140 - 25368017
Alignment:
Q  115 agtgtgcaagagtctctatttatagtgcatgattacttag-gggttaagagagtgaaaatagggtttttccaccaaaaacggcttggaaaacaagcaaac 213  Q
    |||||||||  ||||||||||||||||||||||||| ||  ||||||||||||||||||||||| |||||||||||||| |||||| ||||||||||||     
T  25368140 agtgtgcaatggtctctatttatagtgcatgattacgtacagggttaagagagtgaaaataggggttttccaccaaaaatggcttgaaaaacaagcaaat 25368041  T
Q  214 atcacttcctccctgtgtccatgc 237  Q
    |||||||| | | |||||||||||    
T  25368040 atcacttcttgcatgtgtccatgc 25368017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 18178754 - 18178575
Alignment:
Q  1 aaacaatagaaaaacataccctagagagaacaagagaatgatggagatcctcgtccttgaagctcttaatgcttgacccttgccttgtaccactagtttt 100  Q
    |||||||| ||||| ||||||||||||||||||||| | |||| ||||||||  |||| ||||||| | || |||||| ||||||||||||| ||| |||    
T  18178754 aaacaataaaaaaa-ataccctagagagaacaagaggaggatgaagatcctccacctttaagctctga-tgtttgaccattgccttgtaccattagcttt 18178657  T
Q  101 ctgaat-aatacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaagagagtgaaaatagggttttt 182  Q
     ||||| |||| || |||||||||| ||||||||| ||| ||||| ||||||||||||||||||||  ||||||| |||||||    
T  18178656 ttgaatgaataaaaaagtgtgcaagggtctctattgatattgcatcattacttaggggttaagaga-agaaaataaggttttt 18178575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 7742384 - 7742548
Alignment:
Q  1 aaacaatagaaaaacataccctagagagaacaagagaatgatggagatcctcgtccttgaagctcttaatgcttgacccttgccttgtaccactagtttt 100  Q
    ||||| |||||||| ||||| | |||| |||||||| |||||| ||||||||   ||||||||| || ||| |||||||||||||||||||||||  |||    
T  7742384 aaacagtagaaaaatataccattgagaaaacaagaggatgatgaagatcctctgacttgaagct-ttgatgtttgacccttgccttgtaccactaacttt 7742482  T
Q  101 ctgaataat-acaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaagaga 165  Q
     ||||| || | ||||||||||||| ||||||||||||| ||||| ||| ||||||||||||||||    
T  7742483 ttgaatgattaaaagagtgtgcaagggtctctatttataatgcatcattgcttaggggttaagaga 7742548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 6 - 153
Target Start/End: Original strand, 19763395 - 19763542
Alignment:
Q  6 atagaaaaacataccctagagagaacaagagaatgatggagatcctcgtccttgaagctcttaatgcttgacccttgccttgtaccactagttttctgaa 105  Q
    |||||||||| |||||| ||||||||||||| | |||| ||||||||  |||||||||| || ||| |||||||||||||||||||||||| ||| ||||    
T  19763395 atagaaaaacttacccttgagagaacaagaggaggatgaagatcctctgccttgaagct-ttgatgtttgacccttgccttgtaccactagctttttgaa 19763493  T
Q  106 t-aatacaagagtgtgcaagagtctctatttatagtgcatgattactta 153  Q
    | |||| ||||||||  ||| |||  |||||||||| ||| | ||||||    
T  19763494 tgaataaaagagtgtataagggtccatatttatagtacatcactactta 19763542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 5 - 184
Target Start/End: Complemental strand, 20084108 - 20083929
Alignment:
Q  5 aatagaaaaacataccctagagagaacaagagaatgatggagatcctcgtccttgaagctcttaatgcttgacccttgccttgtaccactagttttctga 104  Q
    |||| |||||||||||||||||||||||| || ||||||  |||| || ||||||||| ||| | ||||||||| || | ||||||| |||| ||||| |    
T  20084108 aatataaaaacataccctagagagaacaacaggatgatgaggatcttcttccttgaagttctga-tgcttgaccttttctttgtacctctagctttctaa 20084010  T
Q  105 at-aatacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaagagagtgaaaatagggtttttcc 184  Q
    |  |||| |||||| || ||| || |||||||||| | ||| |||||||||||||||| |||   ||||||||||||||||    
T  20084009 aagaataaaagagtatgaaagggtatctatttatattacatcattacttaggggttaacagaagaaaaatagggtttttcc 20083929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 20695245 - 20695088
Alignment:
Q  1 aaacaatagaaaaacataccctagagagaacaagagaatgatggagatcctcgtccttgaagctcttaatgcttgacccttgccttgtaccactagtttt 100  Q
    |||||||||||||||||||||||||||||| ||||  | |||| ||||||    |||||||| |   | ||||||||||||||||| ||||||||| |||    
T  20695245 aaacaatagaaaaacataccctagagagaaaaagaagaggatgaagatccattgccttgaagttgcga-tgcttgacccttgccttctaccactagcttt 20695147  T
Q  101 ctgaat-aatacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggt 158  Q
    |||||| |||  ||  || |||||||||||||||||||||| ||| |||||||| ||||    
T  20695146 ctgaatgaatgaaaaggtttgcaagagtctctatttatagtacatcattacttacgggt 20695088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 269 - 409
Target Start/End: Complemental strand, 19331814 - 19331664
Alignment:
Q  269 aattctgcagttttcgaccatttttcaagcgttcttctatcttgcgatgtcttggaacttcaaatgaagtttcttcactttgtattgt----------ct 358  Q
    |||| |||||||||||||| |||||||| ||||||||| | |||| |||||||  ||||||||||||  | ||||||| |||||||||          ||    
T  19331814 aattatgcagttttcgaccttttttcaaacgttcttctgttttgcaatgtcttataacttcaaatgacttatcttcacattgtattgtcttcaaatgtct 19331715  T
Q  359 tctaagaactattgaacttcaatcttcatatcctcgatccttcacgtgatg 409  Q
    ||||| ||  |||||| |||||||||||||||||||||||||||| |||||    
T  19331714 tctaaaaatcattgaatttcaatcttcatatcctcgatccttcacttgatg 19331664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 240 - 359
Target Start/End: Original strand, 23157585 - 23157704
Alignment:
Q  240 ggggcgcatgaggcatcccctcttgcgcaaattctgcagttttcgaccatttttcaagcgttcttctatcttgcgatgtcttggaacttcaaatgaagtt 339  Q
    ||||||||||||| | | | || |||||||||||  |||||||||||| ||||||| |||||||||| |||||| |   |||||||||| ||||||| ||    
T  23157585 ggggcgcatgaggtagctcatcctgcgcaaattcaacagttttcgaccctttttcacgcgttcttctgtcttgcaaaaccttggaactttaaatgaactt 23157684  T
Q  340 tcttcactttgtattgtctt 359  Q
    |||||||||| | |||||||    
T  23157685 tcttcactttctgttgtctt 23157704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 22930580 - 22930492
Alignment:
Q  1 aaacaatagaaaaacataccctagagagaacaagagaatgatggagatcctcgtccttgaagctcttaatgcttgacccttgccttgtac 90  Q
    |||||||||||||||||| |||||||| ||||| || | |||||||||||||  |||| |||||||| ||| ||||||||||||||||||    
T  22930580 aaacaatagaaaaacataacctagagataacaaaaggaggatggagatcctctaccttaaagctctt-atgtttgacccttgccttgtac 22930492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 67 - 165
Target Start/End: Complemental strand, 25681148 - 25681049
Alignment:
Q  67 taatgcttgacccttgccttgtaccactagttttctgaataa-tacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaagaga 165  Q
    ||||||||||||||||||||| |||||||| ||||||||||| ||  |  ||||||||| ||||||||||||||   |||||| ||||||| ||||||||    
T  25681148 taatgcttgacccttgccttgaaccactagctttctgaataattaataatgtgtgcaagtgtctctatttatagcaaatgatttcttagggtttaagaga 25681049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 25594152 - 25594246
Alignment:
Q  1 aaacaatagaaaaacataccctagagagaacaagagaatgatggagatcctcgtccttgaagctcttaatgcttgacccttgccttgtaccactag 96  Q
    |||||||||||||||||| | ||||||||||||||| | |||| ||| |||| |||||| ||||| | ||| || |||||||||||| ||||||||    
T  25594152 aaacaatagaaaaacatatcttagagagaacaagaggaggatgaagaccctcttccttggagctc-tgatgtttaacccttgccttgaaccactag 25594246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 314 - 360
Target Start/End: Original strand, 18872907 - 18872953
Alignment:
Q  314 gatgtcttggaacttcaaatgaagtttcttcactttgtattgtcttc 360  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||||    
T  18872907 gatgtcttggaacttcaaatgaattttcttcaatttgtattgtcttc 18872953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 26329554 - 26329651
Alignment:
Q  1 aaacaatagaaaaacataccctagagagaacaagagaatgatggagatcctcgtccttgaagctcttaatgcttgacccttgccttgtaccactagtttt 100  Q
    |||||||||||||||||||||||||||| | ||||||| ||  || |||||   ||||||||||| ||||||||||||||||||||| |||| |||| ||    
T  26329554 aaacaatagaaaaacataccctagagaggataagagaagga-agaaatcct--gccttgaagctc-taatgcttgacccttgccttgaaccattagtgtt 26329649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 4 - 187
Target Start/End: Complemental strand, 30791226 - 30791045
Alignment:
Q  4 caatagaaaaacataccctagagagaacaagagaatgatggagatcctcgtccttgaagctcttaatgcttgacccttgccttgtaccactagttttctg 103  Q
    ||||||| || ||| |||||||||||||||||| |  ||  ||||||||  |||| ||||||| | ||||||| |||| |||||| | || |  ||||||    
T  30791226 caatagacaagcatgccctagagagaacaagaggagaatcaagatcctctgccttaaagctctga-tgcttgaacctttccttgtcctacgaactttctg 30791128  T
Q  104 aataat-acaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaagagagtgaaaatagggtttttccacc 187  Q
    |||||| | ||||||||||||| |||| ||| |||||  ||| ||||||||||  ||||||||   ||||| |||||||||||||    
T  30791127 aataattagaagagtgtgcaagggtctatatatatagcacatcattacttaggatttaagaga--aaaaattgggtttttccacc 30791045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 78 - 165
Target Start/End: Original strand, 17695027 - 17695115
Alignment:
Q  78 ccttgccttgtaccactagttttctgaat-aatacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaagaga 165  Q
    |||||||||||||  |||  ||| ||||| |||| ||| | |||||||| |||||||||||||||||| ||||||||||| ||||||||    
T  17695027 ccttgccttgtacatctaactttttgaatgaataaaagtgcgtgcaagactctctatttatagtgcatcattacttagggtttaagaga 17695115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 31340850 - 31341001
Alignment:
Q  1 aaacaatagaaaaacataccctagagagaacaagagaatgatggagatcctcgtccttgaagctcttaatgcttgacccttgccttgtaccactagtttt 100  Q
    ||||||||||||||||||    |||||||||||||  | ||| |||||||||  |||||||||| |  ||| ||||||||||| |||||   |||| |||    
T  31340850 aaacaatagaaaaacatata--agagagaacaagaagaggattgagatcctctgccttgaagct-tcgatgtttgacccttgctttgtatatctagcttt 31340946  T
Q  101 ctgaat-aatacaagagtgtgcaagagtctctatttatagtgcatgattacttag 154  Q
    | |||| |||  ||||||||||||| ||||||||||||||| ||  |||||||||    
T  31340947 cagaatgaatttaagagtgtgcaagggtctctatttatagtacaccattacttag 31341001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 357 - 411
Target Start/End: Original strand, 11274238 - 11274292
Alignment:
Q  357 cttctaagaactattgaacttcaatcttcatatcctcgatccttcacgtgatgtc 411  Q
    ||||||||||| ||||  |||||||||||||||||| ||||||||| ||||||||    
T  11274238 cttctaagaaccattggtcttcaatcttcatatccttgatccttcatgtgatgtc 11274292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 11 - 65
Target Start/End: Original strand, 22643454 - 22643508
Alignment:
Q  11 aaaacataccctagagagaacaagagaatgatggagatcctcgtccttgaagctc 65  Q
    |||| ||||||||||||||||||||| |||||||| ||| || ||||||||||||    
T  22643454 aaaaaataccctagagagaacaagaggatgatggatatcttcttccttgaagctc 22643508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 357 - 410
Target Start/End: Original strand, 7742778 - 7742831
Alignment:
Q  357 cttctaagaactattgaacttcaatcttcatatcctcgatccttcacgtgatgt 410  Q
    ||||||||||| ||||| ||||| |||||||||| ||||| |||||||||||||    
T  7742778 cttctaagaaccattgatcttcagtcttcatatcttcgattcttcacgtgatgt 7742831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 322 - 411
Target Start/End: Original strand, 26329933 - 26330031
Alignment:
Q  322 ggaacttcaaatgaagtttcttcactttgtattgtctt----------ctaagaactattgaacttcaatcttcatatcctcgatccttcacgtgatgtc 411  Q
    ||||||| ||||||| ||||||||||||||||||||||          ||||| || ||||| |||||||||||||||||| ||||||||| ||||||||    
T  26329933 ggaacttgaaatgaattttcttcactttgtattgtcttaaaaaaccttctaaggaccattga-cttcaatcttcatatccttgatccttcatgtgatgtc 26330031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 17381503 - 17381554
Alignment:
Q  1 aaacaatagaaaaacataccctagagagaacaagagaatgatggagatcctc 52  Q
    |||||||| ||| |||||||||||||||||||| || | |||||||||||||    
T  17381503 aaacaatataaatacataccctagagagaacaaaaggaggatggagatcctc 17381554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 289 - 360
Target Start/End: Original strand, 19763716 - 19763787
Alignment:
Q  289 tttttcaagcgttcttctatcttgcgatgtcttggaacttcaaatgaagtttcttcactttgtattgtcttc 360  Q
    |||||| |||||||||| ||||| | ||   ||||||||| ||||||| ||||||||||||||||| |||||    
T  19763716 tttttcgagcgttcttccatctttcaatcctttggaacttgaaatgaattttcttcactttgtattatcttc 19763787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 18451732 - 18451766
Alignment:
Q  1 aaacaatagaaaaacataccctagagagaacaaga 35  Q
    |||||||||||||||||| ||||||||||||||||    
T  18451732 aaacaatagaaaaacatatcctagagagaacaaga 18451766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 126 - 248
Target Start/End: Original strand, 24410546 - 24410665
Alignment:
Q  126 gtctctatttatagtgcatgattacttaggggttaagagagtgaaaataggg-tttttccaccaaaaacggcttggaaaacaagcaaacatcacttcctc 224  Q
    |||| |||||||||||||| || ||||||| |||||||||   ||| | ||| |||||||||||||    ||||||||||||||||||||  |||| ||     
T  24410546 gtctttatttatagtgcattataacttaggagttaagagaagaaaagtggggttttttccaccaaa----gcttggaaaacaagcaaacaatactttctg 24410641  T
Q  225 cctgtgtccatgcgtggggcgcat 248  Q
    ||||   ||||||| |||||||||    
T  24410642 cctgcagccatgcgcggggcgcat 24410665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 361 - 411
Target Start/End: Original strand, 24410842 - 24410892
Alignment:
Q  361 taagaactattgaacttcaatcttcatatcctcgatccttcacgtgatgtc 411  Q
    ||||||| ||||| ||| |||||||| ||||||||||||||| ||||||||    
T  24410842 taagaaccattgatcttgaatcttcagatcctcgatccttcatgtgatgtc 24410892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 12265103 - 12265140
Alignment:
Q  1 aaacaatagaaaaacataccctagagagaacaagagaa 38  Q
    |||||||||||||| |||| ||||||||||||||||||    
T  12265103 aaacaatagaaaaatatacactagagagaacaagagaa 12265140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 357 - 402
Target Start/End: Complemental strand, 18178308 - 18178263
Alignment:
Q  357 cttctaagaactattgaacttcaatcttcatatcctcgatccttca 402  Q
    |||| |||||| ||||  ||||||||||||||||||||||||||||    
T  18178308 cttccaagaacaattggtcttcaatcttcatatcctcgatccttca 18178263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 24268707 - 24268670
Alignment:
Q  1 aaacaatagaaaaacataccctagagagaacaagagaa 38  Q
    |||||||| |||||||||||||| ||||||||||||||    
T  24268707 aaacaatataaaaacataccctaaagagaacaagagaa 24268670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 24345337 - 24345300
Alignment:
Q  1 aaacaatagaaaaacataccctagagagaacaagagaa 38  Q
    |||||||| |||||||||||||| ||||||||||||||    
T  24345337 aaacaatataaaaacataccctaaagagaacaagagaa 24345300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 139
Target Start/End: Complemental strand, 24846674 - 24846613
Alignment:
Q  79 cttgccttgtaccactagttttctgaat-aatacaagagtgtgcaagagtctctatttatag 139  Q
    ||||||||||||||| | |||||||||| |||| ||| | |||||||||| |||||||||||    
T  24846674 cttgccttgtaccaccaattttctgaatgaataaaagtgcgtgcaagagtgtctatttatag 24846613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 375 - 411
Target Start/End: Complemental strand, 26070662 - 26070626
Alignment:
Q  375 cttcaatcttcatatcctcgatccttcacgtgatgtc 411  Q
    |||||||||||||||||| ||||||||| ||||||||    
T  26070662 cttcaatcttcatatccttgatccttcatgtgatgtc 26070626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 323 - 359
Target Start/End: Complemental strand, 30072366 - 30072330
Alignment:
Q  323 gaacttcaaatgaagtttcttcactttgtattgtctt 359  Q
    |||||| ||||||| ||||||||||||||||||||||    
T  30072366 gaacttgaaatgaaatttcttcactttgtattgtctt 30072330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 78; Significance: 3e-36; HSPs: 2)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 5 - 206
Target Start/End: Complemental strand, 12891 - 12682
Alignment:
Q  5 aatagaaaaacataccctagagagaacaagagaatgatggagatcctcgtccttgaagctcttaatgcttg--acccttgccttgtaccactagttttct 102  Q
    ||||||||| ||| | |||||||||||||||| | |||||||||||||  | |||||||   | ||||||   |||||||||||||||| |||| |||||    
T  12891 aatagaaaatcattctctagagagaacaagaggaggatggagatcctctgctttgaagccgatgatgctttgaacccttgccttgtaccgctagctttct 12792  T
Q  103 gaat-aatacaagagtgtgcaagagtctctatttatagtgcatgattactt-aggggttaa----gagagtgaaaatagggtttttccaccaaaaacggc 196  Q
    |||| |||| |   ||||||||| ||||||||||||||||||| ||||||| |||||||||    |||||||||||||||||||||||||| ||||||||    
T  12791 gaatgaataaactggtgtgcaagggtctctatttatagtgcataattactttaggggttaattaagagagtgaaaatagggtttttccacccaaaacggc 12692  T
Q  197 ttggaaaaca 206  Q
    ||||||||||    
T  12691 ttggaaaaca 12682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 360
Target Start/End: Complemental strand, 12538 - 12457
Alignment:
Q  279 ttttcgaccatttttcaagcgttcttctatcttgcgatgtcttggaacttcaaatgaagtttcttcactttgtattgtcttc 360  Q
    ||||||||| ||||||   | |||||| |||||| || | |||||||||| |||| || ||||||||||||||||| |||||    
T  12538 ttttcgaccctttttcggcccttcttccatcttgtgacgccttggaacttgaaataaattttcttcactttgtattttcttc 12457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 1e-26; HSPs: 28)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 22262995 - 22262835
Alignment:
Q  1 aaacaatagaaaaacataccctagagagaacaagagaatgatggagatcctcgtccttgaagctcttaatgcttgacccttgccttgtaccactagtttt 100  Q
    |||||||||||||||||||  |||||| || ||||  | ||||| |||||||  |||||||||| | | |||||||||||||||||| ||| |||| |||    
T  22262995 aaacaatagaaaaacatacattagagaaaataagaagaggatggcgatcctctaccttgaagctatga-tgcttgacccttgccttgaaccgctagcttt 22262897  T
Q  101 ctgaat-aatacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaa 161  Q
    || ||| |||| ||| |||||||||||||||||||||| |||||| ||||||||||| ||||    
T  22262896 ctcaatgaataaaagtgtgtgcaagagtctctatttatggtgcatcattacttagggtttaa 22262835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 55 - 165
Target Start/End: Original strand, 9396154 - 9396264
Alignment:
Q  55 ccttgaagctcttaatgcttgacccttgccttgtaccactagttttctgaat-aatacaagagtgtgcaagagtctctatttatagtgcatgattactta 153  Q
    |||||||||||| ||||||||||||||||||||||||||||  ||| ||||| ||||  || ||||||| |||||| |||||||||||||| ||| ||||    
T  9396154 ccttgaagctct-aatgcttgacccttgccttgtaccactatctttttgaatgaataagagtgtgtgcacgagtctatatttatagtgcatcatttctta 9396252  T
Q  154 ggggttaagaga 165  Q
     || ||||||||    
T  9396253 aggtttaagaga 9396264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 16528267 - 16528117
Alignment:
Q  1 aaacaatagaaaaacataccctagagagaacaagagaatgatggagatcctcgtccttgaagctcttaatgcttgacccttgccttgtaccactagtttt 100  Q
    |||||||| ||||||||||||||||||||||||||| | |||| ||||||||  ||||| | |||  |||||||||||||| ||||| || ||||| |||    
T  16528267 aaacaatacaaaaacataccctagagagaacaagaggaggatgaagatcctctgccttggaactc-caatgcttgaccctttccttgaacaactagcttt 16528169  T
Q  101 ctgaat-aatacaagagtgtgcaagagtctctatttatagtgcatgattact 151  Q
    || ||| ||||  |  ||||||||  ||||||||||||||  ||||||||||    
T  16528168 ctaaatgaataataatgtgtgcaatggtctctatttatagcacatgattact 16528117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 10 - 138
Target Start/End: Original strand, 13830414 - 13830542
Alignment:
Q  10 aaaaacataccctagagagaacaagagaatgatggagatcctcgtccttgaagctcttaatgcttgacccttgccttgtaccactagttttctgaat-aa 108  Q
    |||| |||||||||||||||||||||| | ||||||||||| | |||||| | ||| ||||| |||||||||||||| |||||| |  ||| ||||| ||    
T  13830414 aaaatcataccctagagagaacaagaggaggatggagatccccttccttggaactc-taatgtttgacccttgccttataccacaaactttatgaatgaa 13830512  T
Q  109 tacaagagtgtgcaagagtctctatttata 138  Q
    || ||| ||||||||| |||| ||||||||    
T  13830513 taaaagtgtgtgcaagggtctttatttata 13830542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 266 - 406
Target Start/End: Original strand, 26499655 - 26499804
Alignment:
Q  266 gcaaattctgcagttttcgaccatttttcaagcgttcttctatcttgcgatgtcttggaacttcaaatgaagtttcttcactttgtattgtcttc----- 360  Q
    ||||||| |||||||||||  | |||||| |||||| |||  |||||| ||| |||| ||||| ||||||| |||||| ||||||||||||||||         
T  26499655 gcaaattttgcagttttcgttc-tttttcgagcgttgttccgtcttgcaatgccttgaaacttgaaatgaattttctttactttgtattgtcttcaaaaa 26499753  T
Q  361 -----taagaactattgaacttcaatcttcatatcctcgatccttcacgtg 406  Q
         ||||||| ||||| ||||||||||||||||||||||| ||||||||    
T  26499754 ccttctaagaaccattgatcttcaatcttcatatcctcgatctttcacgtg 26499804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 4 - 106
Target Start/End: Original strand, 26499356 - 26499457
Alignment:
Q  4 caatagaaaaacataccctagagagaacaagagaatgatggagatcctcgtccttgaagctcttaatgcttgacccttgccttgtaccactagttttctg 103  Q
    ||||| ||||||||||| ||||||||||||||| | |||||||||| |  ||||||||| || | |||||| ||||||||||||| || |||| ||||||    
T  26499356 caatataaaaacataccttagagagaacaagaggaggatggagatcattttccttgaagatc-tgatgcttaacccttgccttgtgcctctagctttctg 26499454  T
Q  104 aat 106  Q
    |||    
T  26499455 aat 26499457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 84 - 249
Target Start/End: Complemental strand, 28178531 - 28178365
Alignment:
Q  84 cttgtaccactagttttctgaat-aatacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaagagagtgaaaatagggttttt 182  Q
    ||||||||||||| ||||||||| |||| || |||  ||||||| || |||||||||||||||  ||| ||||| ||||   ||||||||| ||| ||||    
T  28178531 cttgtaccactagctttctgaatgaataaaatagtcggcaagagcctatatttatagtgcatggctacatagggattaaagaagtgaaaattggggtttt 28178432  T
Q  183 ccaccaaaaacggcttggaaaacaagcaaacatcacttcctccctgtgtccatgcgtggggcgcatg 249  Q
    ||| |||||||| ||||  |   ||||||||| ||||||||  |||| |||||||  ||||||||||    
T  28178431 ccaacaaaaacgacttgagagttaagcaaacaacacttcctagctgtttccatgcacggggcgcatg 28178365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 73 - 144
Target Start/End: Original strand, 10976638 - 10976710
Alignment:
Q  73 ttgacccttgccttgtaccactagttttctgaat-aatacaagagtgtgcaagagtctctatttatagtgcat 144  Q
    ||||||||  |||||||||| ||||||||||||| |||| ||| |||||| ||||||||||||||||||||||    
T  10976638 ttgaccctctccttgtaccaatagttttctgaatgaataaaagtgtgtgccagagtctctatttatagtgcat 10976710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 76 - 183
Target Start/End: Original strand, 17198379 - 17198487
Alignment:
Q  76 acccttgccttgtaccactagttttctgaat-aatacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaagagagtgaaaata 174  Q
    |||||||||||||| | |||||||| | ||| |||| |||||| |||||| ||||||||||| | | ||| ||||||||||||||||||||   ||||||    
T  17198379 acccttgccttgtatcgctagttttataaatgaataaaagagtatgcaagggtctctatttagaatacatcattacttaggggttaagagaagaaaaata 17198478  T
Q  175 gggtttttc 183  Q
    ||| |||||    
T  17198479 ggggttttc 17198487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 15382303 - 15382214
Alignment:
Q  1 aaacaatagaaaaacataccctagagagaacaagaga--atgatggagatcctcgtccttgaagctcttaatgcttgacccttgccttgt 88  Q
    ||||||| |||||||||||||||||||| | || |||  | |||| ||||| ||  ||||||||||||| ||||||||||||||||||||    
T  15382303 aaacaattgaaaaacataccctagagagtataaaagaggaggatgaagatcgtctgccttgaagctcttgatgcttgacccttgccttgt 15382214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 357 - 407
Target Start/End: Complemental strand, 30355523 - 30355473
Alignment:
Q  357 cttctaagaactattgaacttcaatcttcatatcctcgatccttcacgtga 407  Q
    ||||||||||| ||||| |||||||||||||||||||||||||||| ||||    
T  30355523 cttctaagaacgattgatcttcaatcttcatatcctcgatccttcatgtga 30355473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 107 - 212
Target Start/End: Complemental strand, 15318564 - 15318459
Alignment:
Q  107 aatacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaagagagtgaaaatagggtttttccaccaaaaacggcttggaaaaca 206  Q
    |||| ||| ||| ||||||||||||||| ||||||||| ||||| || ||||||| |||   |||||| ||||||||||| |||| | ||||| ||||||    
T  15318564 aataaaagtgtgcgcaagagtctctattcatagtgcatcattacgtatgggttaaaagatgaaaaataaggtttttccactaaaatcagcttgaaaaaca 15318465  T
Q  207 agcaaa 212  Q
    | ||||    
T  15318464 aacaaa 15318459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 69 - 165
Target Start/End: Original strand, 32930036 - 32930133
Alignment:
Q  69 atgcttgacccttgccttgtaccactagttttctgaat-aatacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaagaga 165  Q
    |||||||| | ||| |||||||| |||| ||||||||| |||| ||| || |||||||||||||||||||| || || ||||||||||  ||||||||    
T  32930036 atgcttgatcattgtcttgtaccgctagctttctgaatgaataaaagtgtatgcaagagtctctatttataatggatcattacttaggaattaagaga 32930133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 107 - 162
Target Start/End: Original strand, 12971956 - 12972011
Alignment:
Q  107 aatacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaag 162  Q
    |||| |||||| |||||| ||||||||||||||||||| ||||| |||||||||||    
T  12971956 aataaaagagtctgcaagggtctctatttatagtgcatcattacgtaggggttaag 12972011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 30235867 - 30235902
Alignment:
Q  1 aaacaatagaaaaacataccctagagagaacaagag 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  30235867 aaacaatagaaaaacataccctagagagaacaagag 30235902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 279 - 360
Target Start/End: Original strand, 24507263 - 24507344
Alignment:
Q  279 ttttcgaccatttttcaagcgttcttctatcttgcgatgtcttggaacttcaaatgaagtttcttcactttgtattgtcttc 360  Q
    ||||||||| ||||||   | ||||||||||||| || | |||||||||| |||| || ||||||||||||||||| |||||    
T  24507263 ttttcgaccctttttcggcccttcttctatcttgtgacgccttggaacttgaaataaattttcttcactttgtattttcttc 24507344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 15318683 - 15318596
Alignment:
Q  1 aaacaatagaaaaacataccctagagagaacaagagaatgatggagatcctcgtccttgaagctcttaatgcttgacccttgccttgt 88  Q
    ||||||| ||||||||||||||||||||||||| ||   |||  ||||| || ||||| |||||||| |||||| |||  ||||||||    
T  15318683 aaacaattgaaaaacataccctagagagaacaaaaggtggataaagatcatcttccttaaagctcttgatgcttcaccactgccttgt 15318596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 15376052 - 15375965
Alignment:
Q  1 aaacaatagaaaaacataccctagagagaacaagagaatgatggagatcctcgtccttgaagctcttaatgcttgacccttgccttgt 88  Q
    ||||||| ||||||||||||||||||||||||||   | ||| |||||| ||  ||||||||||| | ||| | ||||||| ||||||    
T  15376052 aaacaattgaaaaacataccctagagagaacaagttgaggattgagatcgtctgccttgaagctcctgatgatggacccttaccttgt 15375965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 289 - 356
Target Start/End: Original strand, 17198652 - 17198719
Alignment:
Q  289 tttttcaagcgttcttctatcttgcgatgtcttggaacttcaaatgaagtttcttcactttgtattgt 356  Q
    |||||| |||| |||||| |||||| ||| |||||||||| |||| || ||| |||||||||||||||    
T  17198652 tttttcgagcgatcttctgtcttgcaatgccttggaactttaaataaattttattcactttgtattgt 17198719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 361 - 408
Target Start/End: Original strand, 33638417 - 33638464
Alignment:
Q  361 taagaactattgaacttcaatcttcatatcctcgatccttcacgtgat 408  Q
    ||||||| ||||| |||||||||||||||||| |||||||||| ||||    
T  33638417 taagaaccattgatcttcaatcttcatatccttgatccttcacttgat 33638464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 357 - 411
Target Start/End: Original strand, 12972293 - 12972347
Alignment:
Q  357 cttctaagaactattgaacttcaatcttcatatcctcgatccttcacgtgatgtc 411  Q
    |||| |||||| ||||| |||||||||||||||| |||||| ||||||| |||||    
T  12972293 cttcaaagaaccattgatcttcaatcttcatatcatcgatctttcacgttatgtc 12972347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 122 - 212
Target Start/End: Complemental strand, 15349198 - 15349108
Alignment:
Q  122 aagagtctctatttatagtgcatgattacttaggggttaagagagtgaaaatagggtttttccaccaaaaacggcttggaaaacaagcaaa 212  Q
    |||||||||||||||||||  || ||||| || ||||||| |||   |||||||||||||||||| |||| |  |||| ||||||| ||||    
T  15349198 aagagtctctatttatagtatattattacgtatgggttaaaagatgaaaaatagggtttttccactaaaatcaacttgaaaaacaaacaaa 15349108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 107 - 181
Target Start/End: Complemental strand, 15369209 - 15369135
Alignment:
Q  107 aatacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaagagagtgaaaatagggtttt 181  Q
    |||| ||| ||| |||||| |||||||||||||||||| ||||| || ||||||| |||   |||||||||||||    
T  15369209 aataaaagtgtgcgcaagaatctctatttatagtgcatcattacgtatgggttaaaagatgaaaaatagggtttt 15369135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 322 - 360
Target Start/End: Complemental strand, 15575175 - 15575137
Alignment:
Q  322 ggaacttcaaatgaagtttcttcactttgtattgtcttc 360  Q
    ||||||| ||||||| |||||||||||||||||||||||    
T  15575175 ggaacttgaaatgaattttcttcactttgtattgtcttc 15575137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 15349332 - 15349259
Alignment:
Q  1 aaacaatagaaaaacataccctagagagaacaagagaatgatggagatcctcgtccttgaagctcttaatgctt 74  Q
    ||||||| ||||||||||||||||||||||||| ||   |||  ||||| || ||||| |||||||| ||||||    
T  15349332 aaacaattgaaaaacataccctagagagaacaaaaggcggataaagatcatcttccttaaagctcttgatgctt 15349259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 120 - 183
Target Start/End: Complemental strand, 15375920 - 15375857
Alignment:
Q  120 gcaagagtctctatttatagtgcatgattacttaggggttaagagagtgaaaat-agggtttttc 183  Q
    ||||||||||||||||||||||||| ||||| || | ||||| ||| ||||||| ||||||||||    
T  15375920 gcaagagtctctatttatagtgcatcattacgtatgagttaaaaga-tgaaaataagggtttttc 15375857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 322 - 358
Target Start/End: Original strand, 17860312 - 17860348
Alignment:
Q  322 ggaacttcaaatgaagtttcttcactttgtattgtct 358  Q
    ||||||| ||||||| |||||||||||||||||||||    
T  17860312 ggaacttgaaatgaattttcttcactttgtattgtct 17860348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 375 - 411
Target Start/End: Original strand, 24507368 - 24507404
Alignment:
Q  375 cttcaatcttcatatcctcgatccttcacgtgatgtc 411  Q
    |||||||||||||||| || |||||||||||||||||    
T  24507368 cttcaatcttcatatcgtcaatccttcacgtgatgtc 24507404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337 (Bit Score: 61; Significance: 5e-26; HSPs: 3)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 5 - 183
Target Start/End: Complemental strand, 3758 - 3573
Alignment:
Q  5 aatagaaaaacataccctagagagaacaagagaatgatggagatcctcgtccttgaagctcttaatgct-tgaccc-ttgccttgtaccactagttttct 102  Q
    ||||||||| ||| | |||||||||||||||| | |||||||||||||  | |||||||   | ||||| |||||| || || |||||| |||||||| |    
T  3758 aatagaaaatcattctctagagagaacaagaggaggatggagatcctctgctttgaagccgatgatgctctgaccccttaccctgtaccgctagttttat 3659  T
Q  103 gaat-aatacaagagtgtgcaagagtctctatttatagtgcatgattacttagggg----ttaagagagtgaaaatagggtttttc 183  Q
    |||| |||| |  |||||||||| ||||||||||||||||||| ||||||||||||    ||||||||||||||||||||||||||    
T  3658 gaatgaataaactagtgtgcaagggtctctatttatagtgcataattacttaggggataattaagagagtgaaaatagggtttttc 3573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 360
Target Start/End: Complemental strand, 2102 - 2021
Alignment:
Q  279 ttttcgaccatttttcaagcgttcttctatcttgcgatgtcttggaacttcaaatgaagtttcttcactttgtattgtcttc 360  Q
    ||||||||| ||||||   | |||||| |||||| || | |||||||||| |||| || ||||||||||||||||| |||||    
T  2102 ttttcgaccctttttcggcccttcttccatcttgtgacgccttggaacttgaaataaattttcttcactttgtattttcttc 2021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 375 - 411
Target Start/End: Complemental strand, 1997 - 1961
Alignment:
Q  375 cttcaatcttcatatcctcgatccttcacgtgatgtc 411  Q
    |||||||||||||||| || |||||||||||||||||    
T  1997 cttcaatcttcatatcgtcaatccttcacgtgatgtc 1961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0190 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 11165 - 11355
Alignment:
Q  1 aaacaatagaaaaacataccctagagagaacaagagaatgatggagatcctcgtccttgaagctcttaatgcttgacccttgccttgtaccactagtttt 100  Q
    |||||||||||||| ||||| ||||||||||| ||| | |||| | ||| ||  |||||||||||| || |||| ||||||||||||||| || || |||    
T  11165 aaacaatagaaaaatataccttagagagaacatgaggaggatgaaaatcatctgccttgaagctctgaa-gcttaacccttgccttgtactacaagcttt 11263  T
Q  101 ctgaat-aatacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaagagagtgaaaatagggtttttccaccaaaa 191  Q
     ||||| |||| || |||||||||| ||||||||||||||| ||| |||||||| || |||  ||| | |||||| |||||||  |||||||    
T  11264 ttgaatgaataaaaaagtgtgcaagtgtctctatttatagtacatcattacttaaggattacaagaataaaaataaggttttttaaccaaaa 11355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0190; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 308 - 360
Target Start/End: Original strand, 11548 - 11599
Alignment:
Q  308 tcttgcgatgtcttggaacttcaaatgaagtttcttcactttgtattgtcttc 360  Q
    |||||| ||| |||||| ||| ||||||| |||||||||||||||||||||||    
T  11548 tcttgcaatgccttgga-cttgaaatgaattttcttcactttgtattgtcttc 11599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 56; Significance: 5e-23; HSPs: 3)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 241 - 360
Target Start/End: Original strand, 227969 - 228088
Alignment:
Q  241 gggcgcatgaggcatcccctcttgcgcaaattctgcagttttcgaccatttttcaagcgttcttctatcttgcgatgtcttggaacttcaaatgaagttt 340  Q
    |||||| |||| || || ||| ||||| ||||| ||| ||||||||| |||||||  ||||||||  |||||| |||||||||||||| ||||||| |||    
T  227969 gggcgcttgagacagcctctcctgcgcgaattcagcaattttcgaccctttttcacccgttcttccgtcttgcaatgtcttggaacttgaaatgaatttt 228068  T
Q  341 cttcactttgtattgtcttc 360  Q
    ||||||||||||||||||||    
T  228069 cttcactttgtattgtcttc 228088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 162 - 249
Target Start/End: Original strand, 227818 - 227905
Alignment:
Q  162 gagagtgaaaatagggtttttccaccaaaaacggcttggaaaacaagcaaacatcacttcctccctgtgtccatgcgtggggcgcatg 249  Q
    ||||||||||||| |||||||| ||||||||  |||||||||||||| ||||| ||||||||   |||||||||| ||||||| ||||    
T  227818 gagagtgaaaatatggtttttcaaccaaaaatagcttggaaaacaagaaaacagcacttcctggttgtgtccatgtgtggggctcatg 227905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 227697 - 227747
Alignment:
Q  1 aaacaatagaaaaacataccctagagagaacaagagaatgatggagatcct 51  Q
    ||||||| ||||||||||| |||||||||||||||| | ||||||||||||    
T  227697 aaacaattgaaaaacatactctagagagaacaagaggaggatggagatcct 227747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: scaffold0386
Description:

Target: scaffold0386; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 8229 - 8393
Alignment:
Q  1 aaacaatagaaaaacataccctagagagaacaagagaatgatggagatcctcgtccttgaagctcttaatgcttgacccttgccttgtaccactagtttt 100  Q
    ||||||||||||||||||| |||||||||||||||| | |||||| ||||||  ||||| | ||| | ||||||||||||||| ||||| || ||| |||    
T  8229 aaacaatagaaaaacatacactagagagaacaagaggaggatggatatcctctaccttggaactc-tgatgcttgacccttgcgttgtaacattagcttt 8327  T
Q  101 ctgaat-aatacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaagaga 165  Q
    |||||| |||| ||  || |||||| ||||||||||||||   || ||||||||||| | ||||||    
T  8328 ctgaatgaataaaaatgtctgcaagggtctctatttatagcatattattacttagggttaaagaga 8393  T

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Target: scaffold0386; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 11259 - 11423
Alignment:
Q  1 aaacaatagaaaaacataccctagagagaacaagagaatgatggagatcctcgtccttgaagctcttaatgcttgacccttgccttgtaccactagtttt 100  Q
    ||||||||||||||||||| |||||||||||||||| | |||||| ||||||  ||||| | || || ||||||||||||||||||||| |  ||| |||    
T  11259 aaacaatagaaaaacatacactagagagaacaagaggaggatggatatcctctaccttggaact-ttgatgcttgacccttgccttgtaacgttagcttt 11357  T
Q  101 ctgaat-aatacaagagtgtgcaagagtctctatttatagtgcatgattacttaggggttaagaga 165  Q
    |||||| |||| ||   |||||||| ||||||||||||||   || ||||||||||  ||||||||    
T  11358 ctgaatgaataaaaatatgtgcaagggtctctatttatagcatattattacttaggatttaagaga 11423  T

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Target: scaffold1149 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: scaffold1149
Description:

Target: scaffold1149; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 280 - 360
Target Start/End: Complemental strand, 2080 - 2000
Alignment:
Q  280 tttcgaccatttttcaagcgttcttctatcttgcgatgtcttggaacttcaaatgaagtttcttcactttgtattgtcttc 360  Q
    |||||||| |||||||  ||||||||| |||||| | || ||||||||| ||||||| |||||| ||||||||||||||||    
T  2080 tttcgaccctttttcacccgttcttctgtcttgcaaagtattggaacttgaaatgaattttctttactttgtattgtcttc 2000  T

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Target: scaffold1149; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 118 - 175
Target Start/End: Complemental strand, 2301 - 2246
Alignment:
Q  118 gtgcaagagtctctatttatagtgcatgattacttaggggttaagagagtgaaaatag 175  Q
    |||||||||||||||||||  |||||  ||||||||||||||||| |||| |||||||    
T  2301 gtgcaagagtctctattta--gtgcaatattacttaggggttaagggagtaaaaatag 2246  T

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Target: scaffold0650 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0650
Description:

Target: scaffold0650; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 5234 - 5316
Alignment:
Q  1 aaacaatagaaaaacataccctagagagaacaagagaatgatggagatcctcgtccttgaagctcttaatgcttgacccttgccttg 87  Q
    |||||||||||||||||| ||||||||||||||||||||||  || |||||   ||||||||||| | |||||||||||||||||||    
T  5234 aaacaatagaaaaacatatcctagagagaacaagagaatga-agaaatcct--gccttgaagctc-tgatgcttgacccttgccttg 5316  T

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Target: scaffold0650; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 357 - 411
Target Start/End: Original strand, 5678 - 5731
Alignment:
Q  357 cttctaagaactattgaacttcaatcttcatatcctcgatccttcacgtgatgtc 411  Q
    ||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||    
T  5678 cttctaagaaccattgaa-ttcaatcttcatatcctcgatccttcatgtgatgtc 5731  T

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Target: scaffold0188 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 358 - 411
Target Start/End: Original strand, 26864 - 26917
Alignment:
Q  358 ttctaagaactattgaacttcaatcttcatatcctcgatccttcacgtgatgtc 411  Q
    |||||||||| ||||||||||||| |||||||||| |||| |||||||||||||    
T  26864 ttctaagaaccattgaacttcaattttcatatccttgatctttcacgtgatgtc 26917  T

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Target: scaffold0185 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0185
Description:

Target: scaffold0185; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 269 - 360
Target Start/End: Complemental strand, 2804 - 2713
Alignment:
Q  269 aattctgcagttttcgaccatttttcaagcgttcttctatcttgcgatgtcttggaacttcaaatgaagtttcttcactttgtattgtcttc 360  Q
    |||| ||||||||||| || |||||| || ||||||||||||||   | ||||||||| | ||||||  |||||||||| ||||||||||||    
T  2804 aattttgcagttttcgtccctttttcgagtgttcttctatcttgacctatcttggaacatgaaatgagttttcttcactctgtattgtcttc 2713  T

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Target: scaffold0362 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0362
Description:

Target: scaffold0362; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 8273 - 8236
Alignment:
Q  1 aaacaatagaaaaacataccctagagagaacaagagaa 38  Q
    |||||||||||||| |||||||||||||||||||||||    
T  8273 aaacaatagaaaaaaataccctagagagaacaagagaa 8236  T

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Target: scaffold0043 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 368 - 412
Target Start/End: Complemental strand, 58941 - 58897
Alignment:
Q  368 tattgaacttcaatcttcatatcctcgatccttcacgtgatgtcc 412  Q
    |||| ||||||||||||||||| |||||||||||| |||||||||    
T  58941 tattaaacttcaatcttcatattctcgatccttcatgtgatgtcc 58897  T

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Target: scaffold0043; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 284 - 360
Target Start/End: Complemental strand, 59038 - 58963
Alignment:
Q  284 gaccatttttcaagcgttcttctatcttgcgatgtcttggaacttcaaatgaagtttcttcactttgtattgtcttc 360  Q
    |||| ||||||||||||||||   ||||| |||  |||||||||| ||||||| |||||||| |||| |||||||||    
T  59038 gaccctttttcaagcgttctttcgtcttgtgataccttggaactttaaatgaa-tttcttcattttgcattgtcttc 58963  T

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Target: scaffold0836 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0836
Description:

Target: scaffold0836; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 295 - 357
Target Start/End: Complemental strand, 2886 - 2824
Alignment:
Q  295 aagcgttcttctatcttgcgatgtcttggaacttcaaatgaagtttcttcactttgtattgtc 357  Q
    |||||||||| | ||||| |||  |||||| ||| ||||||| ||||||||||||||||||||    
T  2886 aagcgttcttttgtcttgtgataccttggatctttaaatgaattttcttcactttgtattgtc 2824  T

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Target: scaffold0171 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 357 - 411
Target Start/End: Complemental strand, 21604 - 21550
Alignment:
Q  357 cttctaagaactattgaacttcaatcttcatatcctcgatccttcacgtgatgtc 411  Q
    ||||||||||| ||||| |||||||||||||||| | ||||||||| || |||||    
T  21604 cttctaagaaccattgatcttcaatcttcatatcattgatccttcatgtaatgtc 21550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 37601 - 37568
Alignment:
Q  1 aaacaatagaaaaacataccctagagagaacaag 34  Q
    ||||||| ||||||||||||||||||||||||||    
T  37601 aaacaattgaaaaacataccctagagagaacaag 37568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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