View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7763_low_18 (Length: 348)
Name: NF7763_low_18
Description: NF7763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7763_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 320; Significance: 1e-180; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 332
Target Start/End: Complemental strand, 1831946 - 1831615
Alignment:
| Q |
1 |
agagacaattttgttttgatccaattgaatgttggtacaaccagaggagccacaatttaactgaatagctaagtcgttagctgaagttccagtaaatcct |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1831946 |
agagacaattttgttttgatccaattgaatgttggttcaaccagatgagccacaatttaactgaatagctaagtcgttagctgaagttccagtaaatcct |
1831847 |
T |
|
| Q |
101 |
cgatatgtcacatcactcaccgacacatctccagcctaataatttacaaaattcacaatatataactatactatataaaacaaaccaacattactacatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1831846 |
cgatatgtcacatcactcaccgacacatctccagcctaataatttacaaaattcacaatatataactatactatataaaacaaaccaacattactacatt |
1831747 |
T |
|
| Q |
201 |
gttgatatcacaaaagatataataattatgaataatgtagaatgaaatatgtacctgaggaataatatcattgtaatattgatctataattatggggttc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
1831746 |
gttgatatcacaaaagatataataattatgaataatgtagaatgaaatatgtacctgaggaataatatcattgtaatattgatctataattatggagttc |
1831647 |
T |
|
| Q |
301 |
ttaacattaacaaggataatttggtcatatgt |
332 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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| T |
1831646 |
ttaacattaacaaggataatttggtcatatgt |
1831615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 332
Target Start/End: Complemental strand, 1866389 - 1866058
Alignment:
| Q |
1 |
agagacaattttgttttgatccaattgaatgttggtacaaccagaggagccacaatttaactgaatagctaagtcgttagctgaagttccagtaaatcct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1866389 |
agagacaattttgttttgatccaattgaatgttggttcaaccagatgagccacaatttaactgaatagctaagtcgttagctgaagttccagtaaatcct |
1866290 |
T |
|
| Q |
101 |
cgatatgtcacatcactcaccgacacatctccagcctaataatttacaaaattcacaatatataactatactatataaaacaaaccaacattactacatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1866289 |
cgatatgtcacatcactcaccgacacatctccagcctaataatttacaaaattcacaatatataactatactatataaaacaaaccaacattactacatt |
1866190 |
T |
|
| Q |
201 |
gttgatatcacaaaagatataataattatgaataatgtagaatgaaatatgtacctgaggaataatatcattgtaatattgatctataattatggggttc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
1866189 |
gttgatatcacaaaagatataataattatgaataatgtagaatgaaatatgtacctgaggaataatatcattgtaatattgatctataattatggagttc |
1866090 |
T |
|
| Q |
301 |
ttaacattaacaaggataatttggtcatatgt |
332 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
1866089 |
ttaacattaacaaggataatttggtcatatgt |
1866058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 37 - 145
Target Start/End: Complemental strand, 2534277 - 2534169
Alignment:
| Q |
37 |
acaaccagaggagccacaatttaactgaatagctaagtcgttagctgaagttccagtaaatcctcgatatgtcacatcactcaccgacacatctccagcc |
136 |
Q |
| |
|
||||||||| |||| |||||||||||||||||||||| || |||| |||||||| |||||||||||| || |||| |||||||||||||| | || || |
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|
| T |
2534277 |
acaaccagaagagctacaatttaactgaatagctaagccgctagcagaagttccggtaaatcctcgaaatttcactgaactcaccgacacatttgcaccc |
2534178 |
T |
|
| Q |
137 |
taataattt |
145 |
Q |
| |
|
||||||||| |
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|
| T |
2534177 |
taataattt |
2534169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 37 - 145
Target Start/End: Complemental strand, 2543721 - 2543613
Alignment:
| Q |
37 |
acaaccagaggagccacaatttaactgaatagctaagtcgttagctgaagttccagtaaatcctcgatatgtcacatcactcaccgacacatctccagcc |
136 |
Q |
| |
|
||||||||| |||| |||||||||||||||||||||| || |||| |||||||| ||||||||| || || |||| |||||||||||||| | || || |
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|
| T |
2543721 |
acaaccagaagagctacaatttaactgaatagctaagccgctagcagaagttccggtaaatccttgaaatttcactgaactcaccgacacatttgcaccc |
2543622 |
T |
|
| Q |
137 |
taataattt |
145 |
Q |
| |
|
||||||||| |
|
|
| T |
2543621 |
taataattt |
2543613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 5 - 111
Target Start/End: Complemental strand, 2556836 - 2556730
Alignment:
| Q |
5 |
acaattttgttttgatccaattgaatgttggtacaaccagaggagccacaatttaactgaatagctaagtcgttagctgaagttccagtaaatcctcgat |
104 |
Q |
| |
|
||||| || |||||||||||| |||||| | |||||||||||||| ||||||||| | || ||||| | | |||| |||||||| ||||||||||||| |
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|
| T |
2556836 |
acaatgttattttgatccaatagaatgtcgaaacaaccagaggagctacaatttaaattaacagctatcttgctagcagaagttccggtaaatcctcgat |
2556737 |
T |
|
| Q |
105 |
atgtcac |
111 |
Q |
| |
|
||||||| |
|
|
| T |
2556736 |
atgtcac |
2556730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 5 - 121
Target Start/End: Complemental strand, 2566662 - 2566546
Alignment:
| Q |
5 |
acaattttgttttgatccaattgaatgttggtacaaccagaggagccacaatttaactgaatagctaagtcgttagctgaagttccagtaaatcctcgat |
104 |
Q |
| |
|
||||| || |||||||||||| |||| ||| |||||||| ||||| ||||||||| | || ||||| | | |||| ||||||||| |||||||||||| |
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|
| T |
2566662 |
acaatgttattttgatccaatagaatattgaaacaaccaggggagctacaatttaaattaacagctatcttgctagcagaagttccaataaatcctcgat |
2566563 |
T |
|
| Q |
105 |
atgtcacatcactcacc |
121 |
Q |
| |
|
|||||||| ||||||| |
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|
| T |
2566562 |
atgtcacagaactcacc |
2566546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 83 - 127
Target Start/End: Complemental strand, 2551148 - 2551104
Alignment:
| Q |
83 |
gaagttccagtaaatcctcgatatgtcacatcactcaccgacaca |
127 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |||||||||||| |
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|
| T |
2551148 |
gaagttccggtaaatcctcgatatgtcacatctctcaccgacaca |
2551104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 280 - 332
Target Start/End: Complemental strand, 2543495 - 2543443
Alignment:
| Q |
280 |
tgatctataattatggggttcttaacattaacaaggataatttggtcatatgt |
332 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||||||| ||||| ||| |||| |
|
|
| T |
2543495 |
tgatctataattattgggttgttaacattaacaaggatgatttgctcaaatgt |
2543443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 130
Target Start/End: Complemental strand, 2546780 - 2546748
Alignment:
| Q |
98 |
cctcgatatgtcacatcactcaccgacacatct |
130 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |
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|
| T |
2546780 |
cctcgatatgttacatcactcaccgacacatct |
2546748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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