View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7763_low_22 (Length: 321)
Name: NF7763_low_22
Description: NF7763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7763_low_22 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 15 - 310
Target Start/End: Original strand, 31610365 - 31610661
Alignment:
| Q |
15 |
acatcaaaactatggactatcatcagagtgtagtctatgccgcctataagccataacagatactcgtaaccaagatctaaccaaaagcatcagtaaaaaa |
114 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31610365 |
acatcaaaactatggactatcatcagagcgtagtctatgccgcctataagccataacagatactcgtaaccaagatctaaccaaaagcatcagtaaaaag |
31610464 |
T |
|
| Q |
115 |
ccagaatcctactatcatagttatatcataccataatgatataaataagatcatcttgcttcgaaaacaaaattctgaaacacctaaatccagaataaga |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31610465 |
ccagaatcctactatcatagttatatcataccataatgatataaataagatcatcttgcttcgaaaacaaaattctgaaacacctaaatccagaataaga |
31610564 |
T |
|
| Q |
215 |
ataggaattaaatttcagtcaaattttgaagcaaaataatatcacaaacaaaaataatgtattcaaaatgatgatc-tgattggccttaaggttcat |
310 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
31610565 |
ataggaatcaaatttcagtcaaattttgaagcaaaataatatcacaaacaaaaagaatgtattcaaaatgatgatcttgattggccttaaggttcat |
31610661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University