View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7763_low_23 (Length: 317)

Name: NF7763_low_23
Description: NF7763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7763_low_23
NF7763_low_23
[»] chr7 (42 HSPs)
chr7 (59-249)||(22580914-22581104)
chr7 (71-240)||(7678763-7678933)
chr7 (247-303)||(22581368-22581424)
chr7 (1-60)||(16546212-16546271)
chr7 (1-60)||(16619391-16619450)
chr7 (1-60)||(22580129-22580188)
chr7 (1-60)||(13138800-13138859)
chr7 (1-60)||(13879367-13879426)
chr7 (1-60)||(16557485-16557544)
chr7 (1-60)||(16608118-16608177)
chr7 (1-60)||(28623228-28623287)
chr7 (1-60)||(35954786-35954845)
chr7 (2-60)||(15705370-15705427)
chr7 (2-60)||(33604128-33604186)
chr7 (3-60)||(33420979-33421035)
chr7 (1-60)||(4493768-4493827)
chr7 (1-60)||(12175209-12175268)
chr7 (1-60)||(14186910-14186969)
chr7 (1-60)||(15467139-15467198)
chr7 (1-60)||(19328885-19328944)
chr7 (1-60)||(21691648-21691707)
chr7 (2-60)||(13302085-13302143)
chr7 (2-60)||(16315413-16315471)
chr7 (4-60)||(48237713-48237769)
chr7 (1-60)||(13473362-13473420)
chr7 (1-60)||(15574483-15574541)
chr7 (1-60)||(30025158-30025217)
chr7 (2-60)||(10884046-10884104)
chr7 (2-60)||(13645675-13645733)
chr7 (2-60)||(13731552-13731610)
chr7 (1-58)||(23280850-23280908)
chr7 (1-46)||(13034728-13034773)
chr7 (1-61)||(2499251-2499311)
chr7 (28-60)||(44466304-44466336)
chr7 (2-61)||(2914532-2914590)
chr7 (1-60)||(11792094-11792153)
chr7 (1-60)||(13027826-13027885)
chr7 (1-60)||(14424531-14424590)
chr7 (1-60)||(41843297-41843356)
chr7 (2-44)||(9069000-9069042)
chr7 (2-60)||(12367633-12367691)
chr7 (1-45)||(16911752-16911796)
[»] chr8 (29 HSPs)
chr8 (74-248)||(3755664-3755838)
chr8 (79-248)||(2601762-2601929)
chr8 (1-60)||(17796636-17796695)
chr8 (1-60)||(23185619-23185678)
chr8 (1-60)||(6406980-6407038)
chr8 (2-60)||(12758616-12758674)
chr8 (2-60)||(17007529-17007587)
chr8 (2-60)||(17541363-17541421)
chr8 (2-60)||(30422304-30422362)
chr8 (4-60)||(23264503-23264559)
chr8 (1-60)||(9319791-9319850)
chr8 (1-52)||(16206458-16206509)
chr8 (1-60)||(18122005-18122064)
chr8 (1-60)||(31445321-31445380)
chr8 (1-60)||(36104564-36104622)
chr8 (1-60)||(45539357-45539416)
chr8 (2-60)||(25163290-25163348)
chr8 (1-60)||(15336960-15337018)
chr8 (1-60)||(15426025-15426083)
chr8 (1-60)||(15517329-15517387)
chr8 (1-60)||(22672996-22673054)
chr8 (2-60)||(14990962-14991019)
chr8 (2-60)||(19153243-19153301)
chr8 (1-57)||(21932097-21932154)
chr8 (5-60)||(16188489-16188544)
chr8 (1-60)||(22662291-22662349)
chr8 (59-95)||(17782341-17782376)
chr8 (1-60)||(19706732-19706789)
chr8 (8-60)||(39692760-39692812)
[»] chr6 (32 HSPs)
chr6 (74-223)||(11421771-11421920)
chr6 (123-248)||(33670526-33670651)
chr6 (1-60)||(21624316-21624375)
chr6 (2-60)||(17380787-17380845)
chr6 (1-60)||(10631361-10631420)
chr6 (1-60)||(19687958-19688016)
chr6 (1-60)||(32543487-32543546)
chr6 (59-240)||(23256364-23256544)
chr6 (1-60)||(16332954-16333012)
chr6 (1-60)||(21234380-21234439)
chr6 (1-60)||(21617478-21617536)
chr6 (2-60)||(15301442-15301500)
chr6 (2-60)||(15532497-15532555)
chr6 (1-60)||(13435109-13435168)
chr6 (1-60)||(14101310-14101369)
chr6 (1-60)||(19833855-19833913)
chr6 (2-60)||(19085356-19085414)
chr6 (2-60)||(19623211-19623269)
chr6 (2-60)||(25593296-25593353)
chr6 (1-58)||(12422468-12422524)
chr6 (8-60)||(18377651-18377703)
chr6 (1-60)||(20113499-20113559)
chr6 (4-60)||(29537845-29537901)
chr6 (1-60)||(9717050-9717109)
chr6 (5-60)||(14732985-14733040)
chr6 (1-60)||(16528539-16528598)
chr6 (2-60)||(13601391-13601449)
chr6 (1-59)||(20731572-20731630)
chr6 (1-60)||(24717683-24717744)
chr6 (7-60)||(16876133-16876185)
chr6 (1-60)||(3680328-3680385)
chr6 (1-60)||(17304132-17304189)
[»] chr4 (25 HSPs)
chr4 (72-248)||(53976856-53977022)
chr4 (1-60)||(56033750-56033809)
chr4 (1-59)||(22676388-22676446)
chr4 (1-61)||(14905153-14905213)
chr4 (1-60)||(29120590-29120649)
chr4 (1-60)||(44397431-44397490)
chr4 (2-60)||(16631661-16631719)
chr4 (2-60)||(37986442-37986500)
chr4 (1-57)||(37436358-37436413)
chr4 (1-60)||(3792555-3792614)
chr4 (2-61)||(12599976-12600035)
chr4 (1-60)||(19883915-19883974)
chr4 (1-60)||(24628725-24628784)
chr4 (2-60)||(10072112-10072170)
chr4 (2-60)||(19611201-19611259)
chr4 (1-46)||(17246846-17246891)
chr4 (4-61)||(23749747-23749804)
chr4 (1-61)||(14605734-14605794)
chr4 (1-60)||(6516707-6516765)
chr4 (1-60)||(54679083-54679142)
chr4 (1-60)||(55379534-55379593)
chr4 (2-60)||(10071726-10071784)
chr4 (2-60)||(15134941-15134999)
chr4 (2-60)||(29681346-29681404)
chr4 (1-45)||(16852710-16852753)
[»] chr3 (47 HSPs)
chr3 (71-160)||(450481-450569)
chr3 (1-60)||(31302575-31302634)
chr3 (1-60)||(1241947-1242006)
chr3 (1-60)||(14954636-14954695)
chr3 (1-60)||(14968595-14968654)
chr3 (1-60)||(49554382-49554441)
chr3 (4-60)||(11189219-11189275)
chr3 (1-60)||(13823296-13823355)
chr3 (1-60)||(38178517-38178576)
chr3 (2-60)||(8874998-8875056)
chr3 (1-60)||(18122520-18122579)
chr3 (1-60)||(20628334-20628393)
chr3 (1-60)||(21639154-21639212)
chr3 (1-60)||(29854637-29854695)
chr3 (1-60)||(29952309-29952368)
chr3 (1-60)||(30001463-30001522)
chr3 (1-60)||(40799116-40799175)
chr3 (1-60)||(52283021-52283080)
chr3 (6-60)||(15902421-15902475)
chr3 (2-60)||(17667596-17667654)
chr3 (1-59)||(52919651-52919709)
chr3 (1-49)||(5212803-5212850)
chr3 (4-60)||(41494229-41494284)
chr3 (1-60)||(6089954-6090013)
chr3 (1-60)||(12727108-12727167)
chr3 (5-60)||(2782710-2782767)
chr3 (5-60)||(2783100-2783157)
chr3 (2-60)||(49643637-49643695)
chr3 (1-60)||(11222019-11222081)
chr3 (1-60)||(11222771-11222833)
chr3 (4-60)||(14393870-14393926)
chr3 (2-46)||(16659434-16659478)
chr3 (1-61)||(46350713-46350773)
chr3 (1-52)||(22804893-22804944)
chr3 (17-60)||(40850204-40850246)
chr3 (1-60)||(46797267-46797325)
chr3 (1-60)||(49669358-49669416)
chr3 (1-44)||(50299480-50299523)
chr3 (2-60)||(12963959-12964017)
chr3 (2-60)||(13781459-13781517)
chr3 (2-60)||(13939122-13939180)
chr3 (2-60)||(17239802-17239860)
chr3 (2-60)||(19889812-19889870)
chr3 (4-60)||(28581321-28581378)
chr3 (1-60)||(14310906-14310963)
chr3 (12-60)||(22140233-22140280)
chr3 (1-37)||(47206912-47206948)
[»] scaffold0016 (1 HSPs)
scaffold0016 (134-231)||(112188-112286)
[»] chr2 (30 HSPs)
chr2 (1-61)||(22188924-22188984)
chr2 (78-150)||(4664634-4664706)
chr2 (1-60)||(13964800-13964859)
chr2 (1-54)||(23234183-23234236)
chr2 (1-60)||(31801702-31801761)
chr2 (2-60)||(40780533-40780591)
chr2 (1-60)||(24851489-24851548)
chr2 (1-60)||(31328791-31328849)
chr2 (1-60)||(31335512-31335570)
chr2 (1-60)||(39038457-39038516)
chr2 (1-60)||(45087814-45087873)
chr2 (2-60)||(6391890-6391948)
chr2 (2-60)||(24575256-24575314)
chr2 (2-60)||(24778555-24778613)
chr2 (1-59)||(25188627-25188685)
chr2 (2-60)||(28702042-28702100)
chr2 (1-59)||(38780621-38780679)
chr2 (2-57)||(10010568-10010623)
chr2 (1-60)||(22455776-22455835)
chr2 (5-60)||(27294715-27294770)
chr2 (79-240)||(28447832-28447997)
chr2 (2-60)||(20569567-20569625)
chr2 (1-37)||(6574981-6575017)
chr2 (8-60)||(17964127-17964179)
chr2 (1-45)||(20152811-20152855)
chr2 (1-61)||(21538004-21538064)
chr2 (1-60)||(23185149-23185206)
chr2 (1-60)||(23596412-23596469)
chr2 (1-45)||(28712523-28712567)
chr2 (8-60)||(34322753-34322804)
[»] chr1 (29 HSPs)
chr1 (1-60)||(1577073-1577132)
chr1 (79-203)||(9450929-9451052)
chr1 (1-60)||(2833880-2833939)
chr1 (2-60)||(7309015-7309072)
chr1 (1-60)||(1899571-1899630)
chr1 (1-60)||(20959826-20959885)
chr1 (5-60)||(22600986-22601041)
chr1 (1-60)||(25449383-25449441)
chr1 (1-60)||(29215024-29215083)
chr1 (1-60)||(44824549-44824607)
chr1 (2-59)||(10250219-10250275)
chr1 (8-60)||(36133435-36133487)
chr1 (1-60)||(22153050-22153109)
chr1 (1-60)||(22428134-22428193)
chr1 (1-60)||(23037319-23037378)
chr1 (5-56)||(38281591-38281642)
chr1 (2-60)||(22202678-22202736)
chr1 (4-57)||(14294081-14294134)
chr1 (1-60)||(19214834-19214893)
chr1 (1-57)||(30571430-30571485)
chr1 (2-45)||(22202556-22202599)
chr1 (1-60)||(32786734-32786793)
chr1 (17-60)||(48571064-48571106)
chr1 (2-60)||(30892289-30892347)
chr1 (2-60)||(33257165-33257223)
chr1 (2-60)||(33277337-33277395)
chr1 (5-45)||(2266325-2266365)
chr1 (4-60)||(10756657-10756713)
chr1 (12-60)||(12283618-12283666)
[»] scaffold0439 (1 HSPs)
scaffold0439 (1-60)||(7535-7593)
[»] scaffold0330 (1 HSPs)
scaffold0330 (1-60)||(497-556)
[»] chr5 (26 HSPs)
chr5 (2-60)||(31487432-31487490)
chr5 (79-245)||(16117586-16117752)
chr5 (5-60)||(13736964-13737019)
chr5 (1-60)||(21100604-21100663)
chr5 (59-150)||(26454335-26454427)
chr5 (1-60)||(7746550-7746609)
chr5 (1-60)||(9399467-9399526)
chr5 (2-60)||(19546385-19546443)
chr5 (2-60)||(33932491-33932549)
chr5 (59-154)||(25632714-25632807)
chr5 (1-60)||(6498538-6498597)
chr5 (1-60)||(11993113-11993171)
chr5 (1-60)||(15516192-15516250)
chr5 (2-60)||(6513285-6513343)
chr5 (14-60)||(16606705-16606751)
chr5 (2-60)||(22000882-22000940)
chr5 (4-60)||(23413833-23413889)
chr5 (5-61)||(28138822-28138877)
chr5 (1-57)||(30116728-30116783)
chr5 (1-45)||(33021898-33021942)
chr5 (2-60)||(90288-90347)
chr5 (1-60)||(21076037-21076096)
chr5 (1-60)||(26764695-26764753)
chr5 (1-60)||(30742163-30742222)
chr5 (1-60)||(37395391-37395450)
chr5 (1-60)||(21199867-21199924)
[»] scaffold0275 (1 HSPs)
scaffold0275 (1-60)||(23853-23911)
[»] scaffold0479 (1 HSPs)
scaffold0479 (1-60)||(9192-9251)
[»] scaffold0471 (1 HSPs)
scaffold0471 (1-60)||(2680-2738)
[»] scaffold0315 (1 HSPs)
scaffold0315 (1-60)||(7895-7954)
[»] scaffold0290 (1 HSPs)
scaffold0290 (1-60)||(19480-19539)
[»] scaffold0036 (1 HSPs)
scaffold0036 (1-60)||(111426-111485)
[»] scaffold0035 (2 HSPs)
scaffold0035 (1-60)||(110418-110476)
scaffold0035 (4-60)||(20294-20350)
[»] scaffold0009 (2 HSPs)
scaffold0009 (1-60)||(83586-83646)
scaffold0009 (4-60)||(83522-83579)
[»] scaffold0005 (1 HSPs)
scaffold0005 (1-61)||(211584-211644)
[»] scaffold0859 (1 HSPs)
scaffold0859 (1-60)||(2195-2254)
[»] scaffold0210 (1 HSPs)
scaffold0210 (1-60)||(847-906)
[»] scaffold0205 (1 HSPs)
scaffold0205 (1-60)||(778-837)
[»] scaffold0115 (1 HSPs)
scaffold0115 (2-58)||(17557-17615)
[»] scaffold0011 (1 HSPs)
scaffold0011 (1-60)||(66231-66289)
[»] scaffold0004 (3 HSPs)
scaffold0004 (1-60)||(210631-210689)
scaffold0004 (2-60)||(378378-378436)
scaffold0004 (5-60)||(219465-219520)
[»] scaffold0567 (1 HSPs)
scaffold0567 (2-60)||(9124-9182)
[»] scaffold0530 (1 HSPs)
scaffold0530 (2-60)||(2841-2899)
[»] scaffold0163 (1 HSPs)
scaffold0163 (2-60)||(25654-25712)
[»] scaffold0084 (2 HSPs)
scaffold0084 (3-60)||(48542-48599)
scaffold0084 (2-60)||(31815-31873)
[»] scaffold1359 (1 HSPs)
scaffold1359 (1-60)||(32-91)
[»] scaffold0607 (1 HSPs)
scaffold0607 (1-60)||(5359-5417)
[»] scaffold0488 (1 HSPs)
scaffold0488 (17-60)||(11425-11467)
[»] scaffold0280 (1 HSPs)
scaffold0280 (1-60)||(3509-3567)
[»] scaffold0028 (1 HSPs)
scaffold0028 (1-60)||(24602-24660)
[»] scaffold0026 (1 HSPs)
scaffold0026 (2-45)||(7120-7163)
[»] scaffold0321 (1 HSPs)
scaffold0321 (136-245)||(13887-13995)
[»] scaffold0146 (1 HSPs)
scaffold0146 (2-60)||(14340-14398)
[»] scaffold0022 (2 HSPs)
scaffold0022 (2-60)||(36655-36713)
scaffold0022 (2-60)||(134715-134773)
[»] scaffold0217 (1 HSPs)
scaffold0217 (1-45)||(755-800)
[»] scaffold0758 (1 HSPs)
scaffold0758 (32-60)||(3540-3568)
[»] scaffold0251 (1 HSPs)
scaffold0251 (1-60)||(7055-7115)
[»] scaffold0081 (1 HSPs)
scaffold0081 (1-60)||(13220-13277)
[»] scaffold0023 (1 HSPs)
scaffold0023 (1-45)||(102796-102840)


Alignment Details
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 42)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 59 - 249
Target Start/End: Original strand, 22580914 - 22581104
Alignment:
Q  59 aattaagggaggatgttagtttgttaattcaagttagaataagtgattagtgacttaatcaaggttgtttggttaagatcacatagtaatcaagttaatt 158  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22580914 aattaagggaggatgttagtttgttaattcaagttagaataagtgattagtgacttaatcaaggttgtttggttaagatcacatagtaatcaagttaatt 22581013  T
Q  159 ttgtttgttatgaagttagttacatttttgctagattttatcattaggttgtttgggtttgagagaggacttgcttctcaagaaactcaat 249  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  22581014 ttgtttgttatgaagttagttacatttttgctagattttatcattaggttgttagggtttgagagaggacttgcttctcaagaaactcaat 22581104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 71 - 240
Target Start/End: Complemental strand, 7678933 - 7678763
Alignment:
Q  71 atgttagtttgttaattcaagttagaataagtgattagtgacttaatcaaggttgtttggttaagatcacatagtaatcaagttaattttgtttgttatg 170  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  7678933 atgttagtttgttaattcaagttagaataagtgatttgtgacttaatcaagtttgtttggttaagatcacatagtaatcaagttagttttgtttgttatg 7678834  T
Q  171 aagttagttacat-ttttgctagattttatcattaggttgtttgggtttgagagaggacttgcttctcaag 240  Q
    ||||||||||||| ||||||||||||||| ||||||||| || ||||||  |||| |||||| ||||||||    
T  7678833 aagttagttacattttttgctagattttagcattaggttattagggttttggagatgacttgtttctcaag 7678763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 247 - 303
Target Start/End: Original strand, 22581368 - 22581424
Alignment:
Q  247 aattaacggatgcatacaaattcaaagacgaaacattaacttgaaagctttgatgtc 303  Q
    ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  22581368 aattaaccgatgcatacaaattcaaagacgaaacattaacttcaaagctttgatgtc 22581424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 16546212 - 16546271
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||||||||||||||||||||  |||||||||||||||||||| ||||||||||||||    
T  16546212 ctgcttctgatcagtgttttcagcttaggagaaaaagaagaaaaagccaacacaattcaa 16546271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 16619450 - 16619391
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||||||||||||||||||||  |||||||||||||||||||| ||||||||||||||    
T  16619450 ctgcttctgatcagtgttttcagcttaggagaaaaagaagaaaaagccaacacaattcaa 16619391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 22580129 - 22580188
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  22580129 ctgcttttgatcagtgttttcagcataggagaaaaagaagaaaaagccaacacaattcaa 22580188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 13138800 - 13138859
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    ||||||||||||| ||||||||| ||| ||||||||||||||||| ||||||||||||||    
T  13138800 ctgcttctgatcaatgttttcagcataagagaaaaagaagaaaaagccaacacaattcaa 13138859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 13879426 - 13879367
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    ||||||||||||||||||||||| ||| ||||||||||||||||| | ||||||||||||    
T  13879426 ctgcttctgatcagtgttttcagcataagagaaaaagaagaaaaagcaaacacaattcaa 13879367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 16557485 - 16557544
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||||||||||||||||||||  ||||||| |||||||||||| ||||||||||||||    
T  16557485 ctgcttctgatcagtgttttcagcttaggagataaagaagaaaaagccaacacaattcaa 16557544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 16608177 - 16608118
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||||||||||||||||||||  ||||||| |||||||||||| ||||||||||||||    
T  16608177 ctgcttctgatcagtgttttcagcttaggagataaagaagaaaaagccaacacaattcaa 16608118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 28623228 - 28623287
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    ||||||||||||||||| |||||  |||||||||||||||||||| ||||||||||||||    
T  28623228 ctgcttctgatcagtgtgttcagcttaggagaaaaagaagaaaaagccaacacaattcaa 28623287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 35954786 - 35954845
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||||||||||||||||||||  ||||||||||||||||||||  |||||||||||||    
T  35954786 ctgcttctgatcagtgttttcagcttaggagaaaaagaagaaaaagtcaacacaattcaa 35954845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 2 - 60
Target Start/End: Original strand, 15705370 - 15705427
Alignment:
Q  2 tgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    ||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||    
T  15705370 tgcttctgatctgtgttttcagt-taggagaaaaagaagaaaaagccaacacaattcaa 15705427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 2 - 60
Target Start/End: Complemental strand, 33604186 - 33604128
Alignment:
Q  2 tgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    ||||||||||||||||||||||  |||||||||| ||||||||| ||||||||||||||    
T  33604186 tgcttctgatcagtgttttcagcttaggagaaaacgaagaaaaagccaacacaattcaa 33604128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 3 - 60
Target Start/End: Complemental strand, 33421035 - 33420979
Alignment:
Q  3 gcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||    
T  33421035 gcttctgatctgtgttttcagt-taggagaaaaagaagaaaaagccaacacaattcaa 33420979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 4493827 - 4493768
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||||||||||||||||||||  |||||||||| ||||||||| | ||||||||||||    
T  4493827 ctgcttctgatcagtgttttcagcttaggagaaaacgaagaaaaagctaacacaattcaa 4493768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 12175209 - 12175268
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    ||||||||||||||||||||||   | ||||||||| |||||||||||||||||||||||    
T  12175209 ctgcttctgatcagtgttttcaactttggagaaaaacaagaaaaaaccaacacaattcaa 12175268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 14186969 - 14186910
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||||||||||||||||||||  ||||||||||||||||||||   ||||||||||||    
T  14186969 ctgcttctgatcagtgttttcagcctaggagaaaaagaagaaaaagtaaacacaattcaa 14186910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 15467198 - 15467139
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||||||||||||||||||||  ||||||||||||||||||||   ||||||||||||    
T  15467198 ctgcttctgatcagtgttttcagcttaggagaaaaagaagaaaaagataacacaattcaa 15467139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 19328885 - 19328944
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||| ||||||||||||||||  | |||||||||||||||||| ||||||||||||||    
T  19328885 ctgcttgtgatcagtgttttcagctttggagaaaaagaagaaaaagccaacacaattcaa 19328944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 21691707 - 21691648
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||||||||||||||||||||  |||||||||| | ||||||| ||||||||||||||    
T  21691707 ctgcttctgatcagtgttttcagcttaggagaaaatgtagaaaaagccaacacaattcaa 21691648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 2 - 60
Target Start/End: Complemental strand, 13302143 - 13302085
Alignment:
Q  2 tgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||||||| |||||||||||  |||||||||| ||||||||||| ||||||||||||    
T  13302143 tgcttctgataagtgttttcagcttaggagaaaacgaagaaaaaactaacacaattcaa 13302085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 2 - 60
Target Start/End: Original strand, 16315413 - 16315471
Alignment:
Q  2 tgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    ||||||||||||||||||||||  |||||||||| ||||||||| | ||||||||||||    
T  16315413 tgcttctgatcagtgttttcagcttaggagaaaacgaagaaaaacctaacacaattcaa 16315471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 4 - 60
Target Start/End: Original strand, 48237713 - 48237769
Alignment:
Q  4 cttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    ||||||||||||||||||||  || |||||||||||||||||  |||||||||||||    
T  48237713 cttctgatcagtgttttcagcttaagagaaaaagaagaaaaagtcaacacaattcaa 48237769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 13473362 - 13473420
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||||||||||||||||||||  |||||||||| |||||||||| | |||||||||||    
T  13473362 ctgcttctgatcagtgttttcagcttaggagaaaacgaagaaaaaa-ctacacaattcaa 13473420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 15574483 - 15574541
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||||||||| || |||||| | |||||||||||||||||||| ||||||||||||||    
T  15574483 ctgcttctgatctgtattttcaat-taggagaaaaagaagaaaaagccaacacaattcaa 15574541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 30025217 - 30025158
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    ||||||||||||| |||||||||  |||||||||| ||||||||| | ||||||||||||    
T  30025217 ctgcttctgatcaatgttttcagcttaggagaaaacgaagaaaaagcaaacacaattcaa 30025158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 60
Target Start/End: Original strand, 10884046 - 10884104
Alignment:
Q  2 tgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    ||||||||||||||||||||||  ||||||||||  |||||||| | ||||||||||||    
T  10884046 tgcttctgatcagtgttttcagcttaggagaaaacaaagaaaaagctaacacaattcaa 10884104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 60
Target Start/End: Complemental strand, 13645733 - 13645675
Alignment:
Q  2 tgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    ||||||||||| ||||||||||  |||||||||| ||||||||| | ||||||||||||    
T  13645733 tgcttctgatcggtgttttcagcttaggagaaaacgaagaaaaagctaacacaattcaa 13645675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 60
Target Start/End: Original strand, 13731552 - 13731610
Alignment:
Q  2 tgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    ||||||||||| ||||||||||  |||||||||| ||||||||| | ||||||||||||    
T  13731552 tgcttctgatctgtgttttcagcttaggagaaaacgaagaaaaagctaacacaattcaa 13731610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 23280850 - 23280908
Alignment:
Q  1 ctgcttctgatcagtgtttt-cagtataggagaaaaagaagaaaaaaccaacacaattc 58  Q
    |||||||||||||||||||| |||  |||||||||||||||||||| | ||||||||||    
T  23280850 ctgcttctgatcagtgtttttcagcttaggagaaaaagaagaaaaatctaacacaattc 23280908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 13034728 - 13034773
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaa 46  Q
    |||||||||||||||||||||||  |||||||||| ||||||||||    
T  13034728 ctgcttctgatcagtgttttcagcttaggagaaaatgaagaaaaaa 13034773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 2499311 - 2499251
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaat 61  Q
    ||||||||||| |||||||||||  |||||||||| |||||||||   |||||||||||||    
T  2499311 ctgcttctgattagtgttttcagcttaggagaaaatgaagaaaaagttaacacaattcaat 2499251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 60
Target Start/End: Complemental strand, 44466336 - 44466304
Alignment:
Q  28 ggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||||||||||||||||||||||||||||||    
T  44466336 ggagaaaaagaagaaaaaaccaacacaattcaa 44466304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 2 - 61
Target Start/End: Original strand, 2914532 - 2914590
Alignment:
Q  2 tgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaat 61  Q
    ||||||||||||||||||||||  |||||| ||| ||||||||| | |||||||||||||    
T  2914532 tgcttctgatcagtgttttcagcttaggag-aaacgaagaaaaagctaacacaattcaat 2914590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 11792153 - 11792094
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    ||||||||||||||||||||||   |||||||||| |||||||||   ||||||||||||    
T  11792153 ctgcttctgatcagtgttttcaacttaggagaaaacgaagaaaaagataacacaattcaa 11792094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 13027826 - 13027885
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    ||||||||||||| ||||||| |  |||||||||| ||||||||| | ||||||||||||    
T  13027826 ctgcttctgatcaatgttttcggcttaggagaaaatgaagaaaaagcaaacacaattcaa 13027885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 14424590 - 14424531
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||||||||||||||||| ||  |||||||||| |||||||||   ||||||||||||    
T  14424590 ctgcttctgatcagtgtttttagattaggagaaaacgaagaaaaagtaaacacaattcaa 14424531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 41843297 - 41843356
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||||||||||||||||||||  || ||||||| |||||||||   ||||||||||||    
T  41843297 ctgcttctgatcagtgttttcagcttaagagaaaacgaagaaaaaggtaacacaattcaa 41843356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 44
Target Start/End: Complemental strand, 9069042 - 9069000
Alignment:
Q  2 tgcttctgatcagtgttttcagtataggagaaaaagaagaaaa 44  Q
    ||||||||||||||||||||||  |||||||||| ||||||||    
T  9069042 tgcttctgatcagtgttttcagcttaggagaaaacgaagaaaa 9069000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 60
Target Start/End: Original strand, 12367633 - 12367691
Alignment:
Q  2 tgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||||||||||||||||||   |||||||||| |||||||||   ||||||||||||    
T  12367633 tgcttctgatcagtgttttcaccttaggagaaaacgaagaaaaagataacacaattcaa 12367691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 16911752 - 16911796
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaa 45  Q
    ||||| |||||||||||| ||||  ||||||||||||||||||||    
T  16911752 ctgctcctgatcagtgttatcagcttaggagaaaaagaagaaaaa 16911796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 127; Significance: 1e-65; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 74 - 248
Target Start/End: Complemental strand, 3755838 - 3755664
Alignment:
Q  74 ttagtttgttaattcaagttagaataagtgattagtgacttaatcaaggttgtttggttaagatcacatagtaatcaagttaattttgtttgttatgaag 173  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |||||||| ||||||||    
T  3755838 ttagtttgttaattcaagttagaataagtgattagtgacttaatcaagtttgtttggttaagatgacatagtaatcaagttagttttgtttattatgaag 3755739  T
Q  174 ttagttacatttttgctagattttatcattaggttgtttgggtttgagagaggacttgcttctcaagaaactcaa 248  Q
    || |||||||||||||||||||||| ||||||||| || ||||||||||||  ||||| |||||||| |||||||    
T  3755738 ttcgttacatttttgctagattttagcattaggttcttagggtttgagagatcacttgtttctcaagcaactcaa 3755664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 79 - 248
Target Start/End: Complemental strand, 2601929 - 2601762
Alignment:
Q  79 ttgttaattcaagttagaataagtgattagtgacttaat-caaggttgtttggttaagatcacatagtaatcaagttaattttgtttgttatgaagttag 177  Q
    ||||||||||||||||| |||| |||||||||| ||||| |||| ||||||| ||||  ||| ||||||||||||||| |||||||||||   |||||||    
T  2601929 ttgttaattcaagttagcataattgattagtgatttaattcaagtttgtttgattaa--tcatatagtaatcaagttagttttgtttgttga-aagttag 2601833  T
Q  178 ttacatttttgctagattttatcattaggttgtttgggtttgagagaggacttgcttctcaagaaactcaa 248  Q
    ||||||||||||||  ||||| || |||||||||  ||||||||||| |||||| ||||| || |||||||    
T  2601832 ttacatttttgctaatttttagcactaggttgttaaggtttgagagatgacttgtttctcgagcaactcaa 2601762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 17796695 - 17796636
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||||||||||||||||||||  |||||||||||||||||||| ||||||||||||||    
T  17796695 ctgcttctgatcagtgttttcagcttaggagaaaaagaagaaaaagccaacacaattcaa 17796636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 23185619 - 23185678
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||||||||||||||||||||  ||| |||||||||||||||||||||||||||||||    
T  23185619 ctgcttctgatcagtgttttcagcttagaagaaaaagaagaaaaaaccaacacaattcaa 23185678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 6407038 - 6406980
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||    
T  6407038 ctgcttctgatctgtattttcagt-taggagaaaaagaagaaaaaaccaacacaattcaa 6406980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 2 - 60
Target Start/End: Original strand, 12758616 - 12758674
Alignment:
Q  2 tgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    ||||||||||||||||||||||| |||||||||| ||||||||| | ||||||||||||    
T  12758616 tgcttctgatcagtgttttcagtttaggagaaaacgaagaaaaagctaacacaattcaa 12758674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 2 - 60
Target Start/End: Complemental strand, 17007587 - 17007529
Alignment:
Q  2 tgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    ||||||||||||||||||||||  |||||||||| ||||||||||| ||||||||||||    
T  17007587 tgcttctgatcagtgttttcagcttaggagaaaacgaagaaaaaacaaacacaattcaa 17007529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 2 - 60
Target Start/End: Original strand, 17541363 - 17541421
Alignment:
Q  2 tgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    ||||||||||||||||||||||  |||||||||| ||||||||||| ||||||||||||    
T  17541363 tgcttctgatcagtgttttcagcttaggagaaaatgaagaaaaaactaacacaattcaa 17541421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 2 - 60
Target Start/End: Original strand, 30422304 - 30422362
Alignment:
Q  2 tgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    ||||||||||||||||||||||  |||||||||||||||||||| | ||||||||||||    
T  30422304 tgcttctgatcagtgttttcagcttaggagaaaaagaagaaaaagcaaacacaattcaa 30422362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 4 - 60
Target Start/End: Original strand, 23264503 - 23264559
Alignment:
Q  4 cttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    ||||||||||||||||||||  |||||||||| ||||||||| ||||||||||||||    
T  23264503 cttctgatcagtgttttcagcttaggagaaaaggaagaaaaagccaacacaattcaa 23264559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 9319850 - 9319791
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||||||||||||||||||||  ||| |||||||||| |||||| |||||||||||||    
T  9319850 ctgcttctgatcagtgttttcagcttagaagaaaaagaataaaaaatcaacacaattcaa 9319791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 16206509 - 16206458
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaaca 52  Q
    |||||||||||||||||||||||  |||||||||||||||||||| ||||||    
T  16206509 ctgcttctgatcagtgttttcagcttaggagaaaaagaagaaaaagccaaca 16206458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 18122005 - 18122064
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    ||||||||||||| |||||||||   ||||||||||||||||||| ||||||||||||||    
T  18122005 ctgcttctgatcaatgttttcagctaaggagaaaaagaagaaaaagccaacacaattcaa 18122064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 31445380 - 31445321
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||||||||||||||||||||  ||||| ||||| || ||||||||||||||||||||    
T  31445380 ctgcttctgatcagtgttttcagcttaggaaaaaaaaaaaaaaaaaccaacacaattcaa 31445321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 36104622 - 36104564
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||||||||| ||||||||||| |||||||||| ||||||||| ||||||||||||||    
T  36104622 ctgcttctgatctgtgttttcagt-taggagaaaatgaagaaaaagccaacacaattcaa 36104564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 45539357 - 45539416
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||||||||||||||||||||  ||||||||||||||||||||   ||||||||||||    
T  45539357 ctgcttctgatcagtgttttcagcttaggagaaaaagaagaaaaagaaaacacaattcaa 45539416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 2 - 60
Target Start/End: Complemental strand, 25163348 - 25163290
Alignment:
Q  2 tgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    ||||||||||||||||||||||  |||||||||| ||||||||| | ||||||||||||    
T  25163348 tgcttctgatcagtgttttcagcttaggagaaaacgaagaaaaagctaacacaattcaa 25163290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 15336960 - 15337018
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    ||||| |||||||||| ||||||| |||||||||||||||||||| | ||||||||||||    
T  15336960 ctgctcctgatcagtgatttcagt-taggagaaaaagaagaaaaagcaaacacaattcaa 15337018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 15426025 - 15426083
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    ||||| |||||||||| ||||||| |||||||||||||||||||| | ||||||||||||    
T  15426025 ctgctcctgatcagtgatttcagt-taggagaaaaagaagaaaaagcaaacacaattcaa 15426083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 15517329 - 15517387
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    ||||| |||||||||| ||||||| |||||||||||||||||||| | ||||||||||||    
T  15517329 ctgctcctgatcagtgatttcagt-taggagaaaaagaagaaaaagcaaacacaattcaa 15517387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 22673054 - 22672996
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||||||||| || |||||||| ||||||||||| |||||||| ||||||||||||||    
T  22673054 ctgcttctgatctgtattttcagt-taggagaaaaacaagaaaaagccaacacaattcaa 22672996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 60
Target Start/End: Original strand, 14990962 - 14991019
Alignment:
Q  2 tgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    ||||||||| | || |||||||| |||||||||||||||||||| ||||||||||||||    
T  14990962 tgcttctgacctgtattttcagt-taggagaaaaagaagaaaaagccaacacaattcaa 14991019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 60
Target Start/End: Complemental strand, 19153301 - 19153243
Alignment:
Q  2 tgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    ||||||||||||||||||||||  |||||||||| |||||| || | ||||||||||||    
T  19153301 tgcttctgatcagtgttttcagcttaggagaaaacgaagaataagctaacacaattcaa 19153243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 21932154 - 21932097
Alignment:
Q  1 ctgcttctgatcagtgtttt-cagtataggagaaaaagaagaaaaaaccaacacaatt 57  Q
    |||||||||||||||||||| |||  |||||||||||||||||||| | |||||||||    
T  21932154 ctgcttctgatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaatt 21932097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 5 - 60
Target Start/End: Complemental strand, 16188544 - 16188489
Alignment:
Q  5 ttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||||||||| ||||||  ||||| |||||||| ||||||| ||||||||||||    
T  16188544 ttctgatcagtgctttcagcttaggaaaaaaagaataaaaaactaacacaattcaa 16188489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 22662349 - 22662291
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||||||||| || ||||  || |||||||||||||||||||| ||||||||||||||    
T  22662349 ctgcttctgatctgtattttt-gtttaggagaaaaagaagaaaaagccaacacaattcaa 22662291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 95
Target Start/End: Complemental strand, 17782376 - 17782341
Alignment:
Q  59 aattaagggaggatgttagtttgttaattcaagttag 95  Q
    ||||||||||||||||||| |||||||||||||||||    
T  17782376 aattaagggaggatgttag-ttgttaattcaagttag 17782341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 19706789 - 19706732
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    ||||||||||||||||  ||||  ||||||||||| ||||||||| | ||||||||||||    
T  19706789 ctgcttctgatcagtgacttca--ataggagaaaacgaagaaaaagctaacacaattcaa 19706732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 39692812 - 39692760
Alignment:
Q  8 tgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||| |||||||||  |||||||||| ||||||||||  ||||||||||||    
T  39692812 tgatcaatgttttcagcttaggagaaaacgaagaaaaaattaacacaattcaa 39692760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 122; Significance: 1e-62; HSPs: 32)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 74 - 223
Target Start/End: Complemental strand, 11421920 - 11421771
Alignment:
Q  74 ttagtttgttaattcaagttagaataagtgattagtgacttaatcaaggttgtttggttaagatcacatagtaatcaagttaattttgtttgttatgaag 173  Q
    |||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  11421920 ttagtttgttaattcaagttagaacaagtgattagtgacttaatcatgtttgtttggttaagatcacatagtaatcaagttagttttgtttgttatgaag 11421821  T
Q  174 ttagttacatttttgctagattttatcattaggttgtttgggtttgagag 223  Q
    ||||||||||||||||||||||||| |||||||||||| || ||||||||    
T  11421820 ttagttacatttttgctagattttagcattaggttgttaggatttgagag 11421771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 123 - 248
Target Start/End: Original strand, 33670526 - 33670651
Alignment:
Q  123 ttgtttggttaagatcacatagtaatcaagttaattttgtttgttatgaagttagttacatttttgctagattttatcattaggttgtttgggtttgaga 222  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||| |||||| ||||||||||    
T  33670526 ttgtttggttaagatcacatagtaatcaagttagttttgtttgttatgaaattagttacatttttgctagattttagcattatgttgttagggtttgaga 33670625  T
Q  223 gaggacttgcttctcaagaaactcaa 248  Q
    || |||||| |||||||| |||||||    
T  33670626 gatgacttgtttctcaagcaactcaa 33670651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 21624375 - 21624316
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||||||||||||||||||||  |||||||||||||||||||| ||||||||||||||    
T  21624375 ctgcttctgatcagtgttttcagcttaggagaaaaagaagaaaaagccaacacaattcaa 21624316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 2 - 60
Target Start/End: Complemental strand, 17380845 - 17380787
Alignment:
Q  2 tgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    ||||||||||||||||||||||  |||||||||||||||||||| ||||||||||||||    
T  17380845 tgcttctgatcagtgttttcagcttaggagaaaaagaagaaaaagccaacacaattcaa 17380787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 10631420 - 10631361
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||||||||||||||||||||  |||||||||||||||||||| | ||||||||||||    
T  10631420 ctgcttctgatcagtgttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 10631361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 19688016 - 19687958
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    ||||||||||||||||||||||  ||||||||||| ||||||||||||||||||||||||    
T  19688016 ctgcttctgatcagtgttttcaacataggagaaaa-gaagaaaaaaccaacacaattcaa 19687958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 32543546 - 32543487
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||||||||||||||||||||  |||||||||||||||||||| | ||||||||||||    
T  32543546 ctgcttctgatcagtgttttcaggttaggagaaaaagaagaaaaagctaacacaattcaa 32543487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 59 - 240
Target Start/End: Original strand, 23256364 - 23256544
Alignment:
Q  59 aattaagggaggatgttagtttgttaattcaagttagaataagtgattagtgacttaatcaagg-ttgtttggttaagatcacatagtaatcaagttaat 157  Q
    ||||||||||||||||| ||||  ||||||||||||| |||  |||||||||  |||||||||| |||||||||||| | ||||| |||| ||||||  |    
T  23256364 aattaagggaggatgttggttt--taattcaagttagtatagttgattagtgttttaatcaaggcttgtttggttaa-aacacattgtaaccaagttgct 23256460  T
Q  158 t-ttgtttgttatgaagttagttac-atttttgctagattttatcattaggttgtttgggtttgagagaggacttgcttctcaag 240  Q
    | | ||| |||||  |||| |||||  |||||||||||||||| ||| |||| ||| || ||||||||| |||||| ||||||||    
T  23256461 tatagttggttat-tagtttgttactgtttttgctagattttagcataaggtagttaggttttgagagatgacttgtttctcaag 23256544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 16333012 - 16332954
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||||||||| || |||||||| |||||||||||||||||||| ||||||||||||||    
T  16333012 ctgcttctgatctgtattttcagt-taggagaaaaagaagaaaaagccaacacaattcaa 16332954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 21234439 - 21234380
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||||||||||||||||||||  ||||||||||||| |||||| | ||||||||||||    
T  21234439 ctgcttctgatcagtgttttcagcttaggagaaaaagaggaaaaagctaacacaattcaa 21234380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 21617536 - 21617478
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||||||||| ||||||||||| |||||||||||||||||| | ||||||||||||||    
T  21617536 ctgcttctgatctgtgttttcagt-taggagaaaaagaagaaacagccaacacaattcaa 21617478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 2 - 60
Target Start/End: Complemental strand, 15301500 - 15301442
Alignment:
Q  2 tgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    ||||||||||||||||||||||  |||||||||| ||||||||| | ||||||||||||    
T  15301500 tgcttctgatcagtgttttcagcttaggagaaaacgaagaaaaagctaacacaattcaa 15301442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 2 - 60
Target Start/End: Original strand, 15532497 - 15532555
Alignment:
Q  2 tgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||| |||||||||||||||||  |||||||||||||||||||| | ||||||||||||    
T  15532497 tgctcctgatcagtgttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 15532555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 13435168 - 13435109
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||||||||||||||||||||  ||||||||||  |||||||| | ||||||||||||    
T  13435168 ctgcttctgatcagtgttttcagcttaggagaaaacaaagaaaaagcaaacacaattcaa 13435109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 14101310 - 14101369
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    ||||||||||||||| |||||||  |||||||||| ||||||||| | ||||||||||||    
T  14101310 ctgcttctgatcagtattttcagcttaggagaaaacgaagaaaaagctaacacaattcaa 14101369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 19833855 - 19833913
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||||||||||||||||||||| ||||||||||||| ||||||   ||||||||||||    
T  19833855 ctgcttctgatcagtgttttcagt-taggagaaaaagatgaaaaagaaaacacaattcaa 19833913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 60
Target Start/End: Complemental strand, 19085414 - 19085356
Alignment:
Q  2 tgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    ||||||| ||||||||||||||  || ||||||| ||||||||| ||||||||||||||    
T  19085414 tgcttcttatcagtgttttcagcttatgagaaaacgaagaaaaagccaacacaattcaa 19085356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 60
Target Start/End: Complemental strand, 19623269 - 19623211
Alignment:
Q  2 tgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    ||||||||||||||||||| ||  |||||||||| ||||||||| |||||| |||||||    
T  19623269 tgcttctgatcagtgtttttagcttaggagaaaacgaagaaaaagccaacataattcaa 19623211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 60
Target Start/End: Complemental strand, 25593353 - 25593296
Alignment:
Q  2 tgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    ||||||||||||||||||||||  |||||||||| ||||||||||  ||||||||||||    
T  25593353 tgcttctgatcagtgttttcagcttaggagaaaacgaagaaaaaa-taacacaattcaa 25593296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 12422524 - 12422468
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattc 58  Q
    |||||||| ||  ||||||||||| |||||||||||||||||||| ||||||||||||    
T  12422524 ctgcttctaatatgtgttttcagt-taggagaaaaagaagaaaaagccaacacaattc 12422468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 18377703 - 18377651
Alignment:
Q  8 tgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||||| |||||||  || ||||||||||||||||| ||||||||||||||    
T  18377703 tgatcagtattttcagcttatgagaaaaagaagaaaaagccaacacaattcaa 18377651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 20113499 - 20113559
Alignment:
Q  1 ctgcttctgatca-gtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    ||||||||||||| ||||||||||  |||||||||| ||||||||| | ||||||||||||    
T  20113499 ctgcttctgatcaagtgttttcagcttaggagaaaacgaagaaaaagcaaacacaattcaa 20113559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 60
Target Start/End: Complemental strand, 29537901 - 29537845
Alignment:
Q  4 cttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||||| |||||||||||  |||||| ||| ||||||||||| ||||||||||||    
T  29537901 cttctgattagtgttttcagcttaggagtaaacgaagaaaaaactaacacaattcaa 29537845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 9717109 - 9717050
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||| |||||||||||||||   |||||||||||||||||||  | ||||||||||||    
T  9717109 ctgcttttgatcagtgttttcaacttaggagaaaaagaagaaaatgcaaacacaattcaa 9717050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 5 - 60
Target Start/End: Original strand, 14732985 - 14733040
Alignment:
Q  5 ttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||||||||||||| ||  |||||||||| ||||||||| | ||||||||||||    
T  14732985 ttctgatcagtgtttttagcttaggagaaaacgaagaaaaagctaacacaattcaa 14733040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 16528598 - 16528539
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||||| |||||||||||||   |||||||||| ||||||||| | ||||||||||||    
T  16528598 ctgcttcttatcagtgttttcaacttaggagaaaacgaagaaaaagctaacacaattcaa 16528539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 60
Target Start/End: Complemental strand, 13601449 - 13601391
Alignment:
Q  2 tgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    ||||||||||||||||||||||  ||||||||||  |||||||| | ||||| ||||||    
T  13601449 tgcttctgatcagtgttttcagcttaggagaaaactaagaaaaagctaacacgattcaa 13601391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 20731572 - 20731630
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattca 59  Q
    |||||||||||||||||||||||  ||| |||||||||| |||||   |||||||||||    
T  20731572 ctgcttctgatcagtgttttcagcttagtagaaaaagaataaaaaggtaacacaattca 20731630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 24717683 - 24717744
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaa--gaagaaaaaaccaacacaattcaa 60  Q
    |||||||||||||||||||||||  |||||||||||  |||||||||   ||||||||||||    
T  24717683 ctgcttctgatcagtgttttcagcttaggagaaaaattgaagaaaaagaaaacacaattcaa 24717744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 60
Target Start/End: Complemental strand, 16876185 - 16876133
Alignment:
Q  7 ctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||||||||||||||| || |||||||| |||||||||| |||| |||||||    
T  16876185 ctgatcagtgttttcagt-taagagaaaaataagaaaaaacaaacataattcaa 16876133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 3680385 - 3680328
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||||||||||||| ||||||  ||||| |||  ||||||||||| ||||||||||||    
T  3680385 ctgcttctgatcagtgatttcag--taggataaatcgaagaaaaaacaaacacaattcaa 3680328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 17304132 - 17304189
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    ||||||||||||||||  |||||||  |||||||| ||||||||| | ||||||||||||    
T  17304132 ctgcttctgatcagtgacttcagta--ggagaaaacgaagaaaaagctaacacaattcaa 17304189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 98; Significance: 3e-48; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 72 - 248
Target Start/End: Original strand, 53976856 - 53977022
Alignment:
Q  72 tgttagtttgttaattcaagttagaataagtgattagtgacttaatcaaggttgtttggttaagatcacatagtaatcaagttaattttgtttgttatga 171  Q
    ||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||    
T  53976856 tgttagtttattaattcaagttagaataaatgattagtgacttaatcaagtttgtttggttaagatcacatactaattaagttaattttgtttgttatga 53976955  T
Q  172 agttagttacatttttgctagattttatcattaggttgtttgggtttgagagaggacttgcttctcaagaaactcaa 248  Q
    |||||          |||||||||||| |||||||||||| |||||||||||| |||||| |||||| | |||||||    
T  53976956 agtta----------tgctagattttagcattaggttgttagggtttgagagatgacttgtttctcatgcaactcaa 53977022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 56033809 - 56033750
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    ||||||||||| |||||||||||  |||||||||||||||||||||||||||||||||||    
T  56033809 ctgcttctgataagtgttttcagcttaggagaaaaagaagaaaaaaccaacacaattcaa 56033750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 22676388 - 22676446
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattca 59  Q
    |||||||||||||||||||||||  |||||||||||||||||||| |||||||||||||    
T  22676388 ctgcttctgatcagtgttttcagcttaggagaaaaagaagaaaaagccaacacaattca 22676446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 14905153 - 14905213
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaat 61  Q
    ||||||||||||| |||||||||  |||||||||||||||||||| |||||||||||||||    
T  14905153 ctgcttctgatcaatgttttcagcttaggagaaaaagaagaaaaagccaacacaattcaat 14905213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 29120649 - 29120590
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||||||||||||||||||||  |||||||||||||||| ||| ||||||||||||||    
T  29120649 ctgcttctgatcagtgttttcagcttaggagaaaaagaagagaaagccaacacaattcaa 29120590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 44397490 - 44397431
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||||||||||||||||||||  || ||||||||||||||||| ||||||||||||||    
T  44397490 ctgcttctgatcagtgttttcagcttaagagaaaaagaagaaaaagccaacacaattcaa 44397431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 2 - 60
Target Start/End: Complemental strand, 16631719 - 16631661
Alignment:
Q  2 tgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    ||||| ||||||||||||||||  |||||||||| ||||||||||||||||||||||||    
T  16631719 tgcttttgatcagtgttttcagcttaggagaaaaggaagaaaaaaccaacacaattcaa 16631661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 2 - 60
Target Start/End: Original strand, 37986442 - 37986500
Alignment:
Q  2 tgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    ||||| ||||||||||||||||| |||||||||| ||||||||||| ||||||||||||    
T  37986442 tgcttatgatcagtgttttcagtttaggagaaaacgaagaaaaaactaacacaattcaa 37986500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 37436358 - 37436413
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaatt 57  Q
    ||||||||||||||||||||||  |||||||||||||||| ||||||||||||||||    
T  37436358 ctgcttctgatcagtgttttcaacataggagaaaaagaag-aaaaaccaacacaatt 37436413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 3792614 - 3792555
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||||| | ||||||||||||  |||||||||||||||||||| ||||||||||||||    
T  3792614 ctgcttctaagcagtgttttcagcttaggagaaaaagaagaaaaagccaacacaattcaa 3792555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 61
Target Start/End: Complemental strand, 12600035 - 12599976
Alignment:
Q  2 tgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaat 61  Q
    ||||||||||||||||||||||  |||||||||| ||||||||| | |||||||||||||    
T  12600035 tgcttctgatcagtgttttcagcttaggagaaaacgaagaaaaagctaacacaattcaat 12599976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 19883974 - 19883915
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    ||||||||||| |||||||| ||  |||||||||||||||||||||| ||||||||||||    
T  19883974 ctgcttctgattagtgtttttagcttaggagaaaaagaagaaaaaactaacacaattcaa 19883915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 24628725 - 24628784
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||||||||||||||||||||  |||||||||| ||||||||| | ||||||||||||    
T  24628725 ctgcttctgatcagtgttttcagcttaggagaaaacgaagaaaaagctaacacaattcaa 24628784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 2 - 60
Target Start/End: Complemental strand, 10072170 - 10072112
Alignment:
Q  2 tgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||||||||||||||||||   |||||||||||||||||||| | ||||||||||||    
T  10072170 tgcttctgatcagtgttttcatcttaggagaaaaagaagaaaaagctaacacaattcaa 10072112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 2 - 60
Target Start/End: Original strand, 19611201 - 19611259
Alignment:
Q  2 tgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    ||||||||||| |||||| |||| |||||||||| ||||||||||| ||||||||||||    
T  19611201 tgcttctgatctgtgtttacagtttaggagaaaacgaagaaaaaactaacacaattcaa 19611259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 17246891 - 17246846
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaa 46  Q
    |||||||||||||||||||||||  |||||||||||||||||||||    
T  17246891 ctgcttctgatcagtgttttcagcttaggagaaaaagaagaaaaaa 17246846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 61
Target Start/End: Complemental strand, 23749804 - 23749747
Alignment:
Q  4 cttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaat 61  Q
    ||||||||||||||||||||  |||||||||| ||||||||| | |||||||||||||    
T  23749804 cttctgatcagtgttttcagcttaggagaaaacgaagaaaaagctaacacaattcaat 23749747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 14605734 - 14605794
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaat 61  Q
    |||||||||||||||||||||||  |||||||||| ||| ||||| | |||||||||||||    
T  14605734 ctgcttctgatcagtgttttcagcttaggagaaaacgaataaaaagctaacacaattcaat 14605794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 6516765 - 6516707
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||||||||| || |||||||| |||||||||||||| ||||| ||||||||||||||    
T  6516765 ctgcttctgatctgtattttcagt-taggagaaaaagaataaaaagccaacacaattcaa 6516707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 54679142 - 54679083
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||| ||||||||||||||||  ||||||||||||||||||||   ||||||||||||    
T  54679142 ctgcttttgatcagtgttttcagcttaggagaaaaagaagaaaaagaaaacacaattcaa 54679083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 55379593 - 55379534
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||||||||||||||||||||  |||||||||| |||| ||||||  |||||||||||    
T  55379593 ctgcttctgatcagtgttttcagcttaggagaaaatgaaggaaaaactcacacaattcaa 55379534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 60
Target Start/End: Complemental strand, 10071784 - 10071726
Alignment:
Q  2 tgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    ||||||| ||||||||||||||  ||||| ||||||||||||||   ||||||||||||    
T  10071784 tgcttcttatcagtgttttcagcttaggaaaaaaagaagaaaaagataacacaattcaa 10071726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 60
Target Start/End: Complemental strand, 15134999 - 15134941
Alignment:
Q  2 tgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||||||||||||||||||   || ||||||| ||||||| ||| ||||||||||||    
T  15134999 tgcttctgatcagtgttttcaacttaagagaaaacgaagaaataactaacacaattcaa 15134941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 60
Target Start/End: Original strand, 29681346 - 29681404
Alignment:
Q  2 tgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    ||||| ||||||||||||||||  |||||||||| ||||||||| | ||||| ||||||    
T  29681346 tgcttatgatcagtgttttcagcttaggagaaaacgaagaaaaagctaacactattcaa 29681404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 16852753 - 16852710
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaa 45  Q
    ||||||||||||||| ||||||  |||||||||||||||||||||    
T  16852753 ctgcttctgatcagtattttcaa-ataggagaaaaagaagaaaaa 16852710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 6e-34; HSPs: 47)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 71 - 160
Target Start/End: Original strand, 450481 - 450569
Alignment:
Q  71 atgttagtttgttaattcaagttagaataagtgattagtgacttaatcaaggttgtttggttaagatcacatagtaatcaagttaatttt 160  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||||||||||||||||    
T  450481 atgttagtttgttaattcaagttagaataagtgattagtgacttaatcaa-tttgtttgcttaagatcacatagtaatcaagttaatttt 450569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 31302634 - 31302575
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  31302634 ctgcttctgatcagtgttttcagcataggagaaaaagaagaaaaaaccaacacaattcaa 31302575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 1241947 - 1242006
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  1241947 ctgcttctgatcagtgttttcagcttaggagaaaaagaagaaaaaaccaacacaattcaa 1242006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 14954695 - 14954636
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||||||||||||||||||||  |||||||||||||||||||| ||||||||||||||    
T  14954695 ctgcttctgatcagtgttttcagcttaggagaaaaagaagaaaaagccaacacaattcaa 14954636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 14968654 - 14968595
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||||||||||||||||||||  |||||||||||||||||||| ||||||||||||||    
T  14968654 ctgcttctgatcagtgttttcagcttaggagaaaaagaagaaaaagccaacacaattcaa 14968595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 49554382 - 49554441
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    ||||||||||||| |||||||||  |||||||||||||||||||||||||||||||||||    
T  49554382 ctgcttctgatcaatgttttcagcttaggagaaaaagaagaaaaaaccaacacaattcaa 49554441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 60
Target Start/End: Complemental strand, 11189275 - 11189219
Alignment:
Q  4 cttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||||||||||||||||   |||||||||||||||||||||||||||||||||||    
T  11189275 cttctgatcagtgttttcatcttaggagaaaaagaagaaaaaaccaacacaattcaa 11189219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 13823355 - 13823296
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    ||||||||||||||||||||| |  |||||||||||||||||||| ||||||||||||||    
T  13823355 ctgcttctgatcagtgttttcggcttaggagaaaaagaagaaaaatccaacacaattcaa 13823296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 38178517 - 38178576
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    ||||||||||| |||||||||||  |||||||||||||||||||| ||||||||||||||    
T  38178517 ctgcttctgattagtgttttcagcttaggagaaaaagaagaaaaagccaacacaattcaa 38178576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 2 - 60
Target Start/End: Original strand, 8874998 - 8875056
Alignment:
Q  2 tgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    ||||||||||||||||||||||  ||||| |||| ||||||||||||||||||||||||    
T  8874998 tgcttctgatcagtgttttcagcttaggaaaaaacgaagaaaaaaccaacacaattcaa 8875056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 18122520 - 18122579
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    ||||| |||||||||||||||||  |||||||||||| ||||||||| ||||||||||||    
T  18122520 ctgctcctgatcagtgttttcagcgtaggagaaaaaggagaaaaaactaacacaattcaa 18122579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 20628334 - 20628393
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    ||||||||||||| |||||||||  |||||||||||||||||||| | ||||||||||||    
T  20628334 ctgcttctgatcactgttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 20628393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 21639154 - 21639212
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||||||||| || |||||||| |||||||||||||||||||| ||||||||||||||    
T  21639154 ctgcttctgatctgtattttcagt-taggagaaaaagaagaaaaagccaacacaattcaa 21639212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 29854695 - 29854637
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||||||||| ||||||||||| |||||||||||||||||||| | ||||||||||||    
T  29854695 ctgcttctgatc-gtgttttcagtttaggagaaaaagaagaaaaagctaacacaattcaa 29854637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 29952309 - 29952368
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||||||||||||||||||||  |||||||||| ||||||||| | ||||||||||||    
T  29952309 ctgcttctgatcagtgttttcagcttaggagaaaacgaagaaaaagctaacacaattcaa 29952368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 30001463 - 30001522
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||||||||||||||||||||  |||||||||| ||||||||| | ||||||||||||    
T  30001463 ctgcttctgatcagtgttttcagcttaggagaaaacgaagaaaaagctaacacaattcaa 30001522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 40799175 - 40799116
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||||||||||||||||||||  ||||||||||||||||||||   ||||||||||||    
T  40799175 ctgcttctgatcagtgttttcagcttaggagaaaaagaagaaaaagaaaacacaattcaa 40799116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 52283080 - 52283021
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||||||||||||||||||||  |||||||||||||| |||||  |||||||||||||    
T  52283080 ctgcttctgatcagtgttttcagcttaggagaaaaagaataaaaagtcaacacaattcaa 52283021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 6 - 60
Target Start/End: Complemental strand, 15902475 - 15902421
Alignment:
Q  6 tctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    ||||||||||||||||||  |||||||||||||||||||| | ||||||||||||    
T  15902475 tctgatcagtgttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 15902421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 2 - 60
Target Start/End: Complemental strand, 17667654 - 17667596
Alignment:
Q  2 tgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    ||||| ||||||||||||||||  |||||||||| ||||||||||| ||||||||||||    
T  17667654 tgcttatgatcagtgttttcagcttaggagaaaatgaagaaaaaactaacacaattcaa 17667596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 52919709 - 52919651
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattca 59  Q
    |||||| ||||||||||||||||  |||||||||| ||||||||||| |||||||||||    
T  52919709 ctgcttgtgatcagtgttttcagcttaggagaaaacgaagaaaaaactaacacaattca 52919651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 5212850 - 5212803
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaacca 49  Q
    |||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  5212850 ctgcttctgatctgtgttttcagt-taggagaaaaagaagaaaaaacca 5212803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 4 - 60
Target Start/End: Complemental strand, 41494284 - 41494229
Alignment:
Q  4 cttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    ||||||||||||||||||||  |||||||||| ||||||||| ||||||||||||||    
T  41494284 cttctgatcagtgttttcagcttaggagaaaa-gaagaaaaagccaacacaattcaa 41494229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 6090013 - 6089954
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||||||||||||||||||||  |||||||||| || |||||| | ||||||||||||    
T  6090013 ctgcttctgatcagtgttttcagcttaggagaaaacgatgaaaaagctaacacaattcaa 6089954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 12727108 - 12727167
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||||||||||||||||||||  |||||||||| ||| ||||| | ||||||||||||    
T  12727108 ctgcttctgatcagtgttttcagcttaggagaaaacgaaaaaaaagctaacacaattcaa 12727167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 60
Target Start/End: Complemental strand, 2782767 - 2782710
Alignment:
Q  5 ttctgatcagtgttttcagtataggagaaaa--agaagaaaaaaccaacacaattcaa 60  Q
    |||||||||||||||||||   |||||||||  |||||||||||||||||||||||||    
T  2782767 ttctgatcagtgttttcagctaaggagaaaagaagaagaaaaaaccaacacaattcaa 2782710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 60
Target Start/End: Complemental strand, 2783157 - 2783100
Alignment:
Q  5 ttctgatcagtgttttcagtataggagaaaa--agaagaaaaaaccaacacaattcaa 60  Q
    |||||||||||||||||||   |||||||||  |||||||||||||||||||||||||    
T  2783157 ttctgatcagtgttttcagctaaggagaaaagaagaagaaaaaaccaacacaattcaa 2783100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 60
Target Start/End: Original strand, 49643637 - 49643695
Alignment:
Q  2 tgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    ||||| ||||||||||||||||  |||||||||| ||||||||| | ||||||||||||    
T  49643637 tgcttttgatcagtgttttcagcttaggagaaaacgaagaaaaagctaacacaattcaa 49643695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 11222081 - 11222019
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaa---gaagaaaaaaccaacacaattcaa 60  Q
    |||||||||||||||||||||||  |||||||| ||   ||||||||| ||||||||||||||    
T  11222081 ctgcttctgatcagtgttttcagcttaggagaagaagatgaagaaaaagccaacacaattcaa 11222019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 11222833 - 11222771
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaa---gaagaaaaaaccaacacaattcaa 60  Q
    |||||||||||||||||||||||  |||||||| ||   ||||||||| ||||||||||||||    
T  11222833 ctgcttctgatcagtgttttcagcttaggagaagaagatgaagaaaaagccaacacaattcaa 11222771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 60
Target Start/End: Original strand, 14393870 - 14393926
Alignment:
Q  4 cttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||||||||||||||||   |||||||||| ||||||||| | ||||||||||||    
T  14393870 cttctgatcagtgttttcaacttaggagaaaacgaagaaaaagctaacacaattcaa 14393926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 16659434 - 16659478
Alignment:
Q  2 tgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaa 46  Q
    ||||||||||||||||||||||  |||||||||| ||||||||||    
T  16659434 tgcttctgatcagtgttttcagcttaggagaaaacgaagaaaaaa 16659478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 46350713 - 46350773
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaat 61  Q
    |||||||| |||||| ||||||   ||||||||||||||||||||  ||||||||||||||    
T  46350713 ctgcttctcatcagtattttcaacttaggagaaaaagaagaaaaagtcaacacaattcaat 46350773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 22804893 - 22804944
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaaca 52  Q
    ||||||||||||||||||||||   |||||||||| ||||||||||| ||||    
T  22804893 ctgcttctgatcagtgttttcaacttaggagaaaacgaagaaaaaactaaca 22804944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 40850246 - 40850204
Alignment:
Q  17 ttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||||| |||||||||||||||||||||| ||||||||||||    
T  40850246 ttttcagt-taggagaaaaagaagaaaaaactaacacaattcaa 40850204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 46797267 - 46797325
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||||||||  || |||||||| ||||||||||||||||||||| ||||||| |||||    
T  46797267 ctgcttctgatttgtattttcagt-taggagaaaaagaagaaaaaatcaacacagttcaa 46797325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 49669358 - 49669416
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||||||||| ||  ||||| | |||||||||||||||||||||| ||||||||||||    
T  49669358 ctgcttctgatctgtactttcaat-taggagaaaaagaagaaaaaacgaacacaattcaa 49669416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 50299523 - 50299480
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaa 44  Q
    ||||||||||||||||||||||   |||||||||||||||||||    
T  50299523 ctgcttctgatcagtgttttcaacttaggagaaaaagaagaaaa 50299480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 60
Target Start/End: Original strand, 12963959 - 12964017
Alignment:
Q  2 tgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    ||||||| ||||||||||||||   ||||||||| ||||||||| | ||||||||||||    
T  12963959 tgcttcttatcagtgttttcagctgaggagaaaatgaagaaaaagctaacacaattcaa 12964017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 60
Target Start/End: Original strand, 13781459 - 13781517
Alignment:
Q  2 tgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    ||||| |||||||||||| |||  |||||||||| ||||||||| | ||||||||||||    
T  13781459 tgcttttgatcagtgtttccagcttaggagaaaacgaagaaaaagctaacacaattcaa 13781517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 60
Target Start/End: Complemental strand, 13939180 - 13939122
Alignment:
Q  2 tgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||||||| |||||||||||  ||||||||||  |||||||| | ||||||||||||    
T  13939180 tgcttctgattagtgttttcagcttaggagaaaacaaagaaaaagctaacacaattcaa 13939122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 60
Target Start/End: Original strand, 17239802 - 17239860
Alignment:
Q  2 tgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    ||||| |||||| |||||||||  |||||||||| ||||||||| | ||||||||||||    
T  17239802 tgcttttgatcattgttttcagcttaggagaaaacgaagaaaaagctaacacaattcaa 17239860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 60
Target Start/End: Original strand, 19889812 - 19889870
Alignment:
Q  2 tgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    ||||||| ||||||||||||||  |||||||||| ||||||||| | |||| |||||||    
T  19889812 tgcttctaatcagtgttttcagcttaggagaaaacgaagaaaaagctaacaaaattcaa 19889870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 60
Target Start/End: Complemental strand, 28581378 - 28581321
Alignment:
Q  4 cttctgatcagtgtttt-cagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||||||| |||||| |||  |||||||||||||||||||| | ||||||||||||    
T  28581378 cttctgatcaatgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 28581321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 14310963 - 14310906
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||||||||||||| ||||||  |||||||||| |||||||||   ||||||||||||    
T  14310963 ctgcttctgatcagtgatttcag--taggagaaaacgaagaaaaataaaacacaattcaa 14310906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 60
Target Start/End: Complemental strand, 22140280 - 22140233
Alignment:
Q  12 cagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    ||||||||| || ||||||||||||||||||||| | ||||||||||||    
T  22140280 cagtgtttttag-ataggagaaaaagaagaaaaagcaaacacaattcaa 22140233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 47206948 - 47206912
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaag 37  Q
    |||||||||||||||||||||||  ||||||||||||    
T  47206948 ctgcttctgatcagtgttttcagcttaggagaaaaag 47206912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 134 - 231
Target Start/End: Original strand, 112188 - 112286
Alignment:
Q  134 agatcacatagtaatcaagttaattttgtttgttatgaagttagttaca-tttttgctagattttatcattaggttgtttgggtttgagagaggacttg 231  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||| |||||| ||||||||| ||||||||| || ||||||  |||| ||||||    
T  112188 agatcacatagtaatcaagttagttttgtttgttatgaagttagttacattttttgttagattttagcattaggttattagggttttggagatgacttg 112286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 8e-24; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 22188924 - 22188984
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaat 61  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  22188924 ctgcttctgatcagtgttttcagcataggagaaaaagaagaaaaaaccaacacaattcaat 22188984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 78 - 150
Target Start/End: Complemental strand, 4664706 - 4664634
Alignment:
Q  78 tttgttaattcaagttagaataagtgattagtgacttaatcaaggttgtttggttaagatcacatagtaatca 150  Q
    ||||||||||||||||||||||  || ||||||| ||||||||||||||||| |||||||||| |||||||||    
T  4664706 tttgttaattcaagttagaatatctgtttagtgatttaatcaaggttgtttgattaagatcacttagtaatca 4664634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 13964800 - 13964859
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||||||||||||||||||||  |||||||||||||||||||||| ||||||||||||    
T  13964800 ctgcttctgatcagtgttttcagcttaggagaaaaagaagaaaaaacaaacacaattcaa 13964859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 23234236 - 23234183
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacaca 54  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  23234236 ctgcttctgatcagtgttttcagcataggagaaaaagaaaaaaaaaccaacaca 23234183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 31801702 - 31801761
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||||||||||||||||||||  ||||| | |||||||||||||||||||||||||||    
T  31801702 ctgcttctgatcagtgttttcagcttaggaaagaaagaagaaaaaaccaacacaattcaa 31801761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 2 - 60
Target Start/End: Complemental strand, 40780591 - 40780533
Alignment:
Q  2 tgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    ||||||||||||||||||||||  |||||||||| ||||||||||| ||||||||||||    
T  40780591 tgcttctgatcagtgttttcagcttaggagaaaacgaagaaaaaactaacacaattcaa 40780533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 24851489 - 24851548
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||||||||||||||||||||  |||||||||| ||||||||| | ||||||||||||    
T  24851489 ctgcttctgatcagtgttttcagcttaggagaaaacgaagaaaaagcaaacacaattcaa 24851548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 31328791 - 31328849
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||||| | |||||||||||| ||||||||||||||||||||||| ||||||||||||    
T  31328791 ctgcttctaaacagtgttttcag-ataggagaaaaagaagaaaaaacaaacacaattcaa 31328849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 31335512 - 31335570
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||||| | |||||||||||| ||||||||||||||||||||||| ||||||||||||    
T  31335512 ctgcttctaaacagtgttttcag-ataggagaaaaagaagaaaaaacaaacacaattcaa 31335570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 39038457 - 39038516
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||||||||||||||||||||  |||||||||| ||||||||| | ||||||||||||    
T  39038457 ctgcttctgatcagtgttttcagcttaggagaaaacgaagaaaaagctaacacaattcaa 39038516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 45087814 - 45087873
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||||||||||||||||||||  ||||||||||||||||||||   ||||||||||||    
T  45087814 ctgcttctgatcagtgttttcagcttaggagaaaaagaagaaaaagaaaacacaattcaa 45087873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 2 - 60
Target Start/End: Complemental strand, 6391948 - 6391890
Alignment:
Q  2 tgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    ||||||||||||||||||||||  || || | |||||||||||||||||||||||||||    
T  6391948 tgcttctgatcagtgttttcagcttaagaaagaaagaagaaaaaaccaacacaattcaa 6391890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 2 - 60
Target Start/End: Complemental strand, 24575314 - 24575256
Alignment:
Q  2 tgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    ||||||||||||||||||||||  |||||||||| ||||||||| | ||||||||||||    
T  24575314 tgcttctgatcagtgttttcagcttaggagaaaatgaagaaaaagctaacacaattcaa 24575256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 2 - 60
Target Start/End: Complemental strand, 24778613 - 24778555
Alignment:
Q  2 tgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    ||||||||||||||||||||||  |||||| ||| ||||||||| ||||||||||||||    
T  24778613 tgcttctgatcagtgttttcagcttaggagtaaacgaagaaaaagccaacacaattcaa 24778555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 25188685 - 25188627
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattca 59  Q
    |||||||||||||||||||||||  |||||||||| ||||||||| | |||||||||||    
T  25188685 ctgcttctgatcagtgttttcagcttaggagaaaacgaagaaaaagctaacacaattca 25188627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 2 - 60
Target Start/End: Original strand, 28702042 - 28702100
Alignment:
Q  2 tgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    ||||||||||||||||||||||  ||||||||||||||||||||   ||||||||||||    
T  28702042 tgcttctgatcagtgttttcagcttaggagaaaaagaagaaaaagaaaacacaattcaa 28702100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 38780679 - 38780621
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattca 59  Q
    |||||| |||| ||||||||| |  ||||||||||||||||||||||||||||||||||    
T  38780679 ctgcttatgattagtgttttcggcttaggagaaaaagaagaaaaaaccaacacaattca 38780621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 57
Target Start/End: Original strand, 10010568 - 10010623
Alignment:
Q  2 tgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaatt 57  Q
    ||||||||||||||||||||||  |||||||||| ||| ||||||| |||||||||    
T  10010568 tgcttctgatcagtgttttcagcttaggagaaaacgaaaaaaaaactaacacaatt 10010623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 22455776 - 22455835
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||||||||||||||||| ||  |||||||||| ||||||||| | ||||||||||||    
T  22455776 ctgcttctgatcagtgttttgagcttaggagaaaacgaagaaaaagctaacacaattcaa 22455835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 60
Target Start/End: Complemental strand, 27294770 - 27294715
Alignment:
Q  5 ttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||||||||||||| ||  |||||||||| ||||||||||| ||||||||||||    
T  27294770 ttctgatcagtgtttttagcttaggagaaaacgaagaaaaaactaacacaattcaa 27294715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 79 - 240
Target Start/End: Original strand, 28447832 - 28447997
Alignment:
Q  79 ttgttaattcaagttagaataagtgattagtgacttaatcaaggttgtttggttaagatcacatagtaatcaagtta-----attttgtttgttatgaag 173  Q
    ||||||||||||||||| |||  |||||||||| |||||||||  |  |||||||| |||| |||||||||||||||     | |||||||||||  |||    
T  28447832 ttgttaattcaagttagtatagttgattagtgatttaatcaagtcttgttggttaa-atcatatagtaatcaagttagttttaatttgtttgtta-aaag 28447929  T
Q  174 ttagttaca-tttttgctagattttatcattaggttgtttgggtttgagagaggacttgcttctcaag 240  Q
    || ||||||  ||||||| | ||||| ||| |||| ||| ||||||| |||| |||||| ||||||||    
T  28447930 tttgttacagattttgcttgcttttagcataaggtagttagggtttgggagatgacttgtttctcaag 28447997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 60
Target Start/End: Original strand, 20569567 - 20569625
Alignment:
Q  2 tgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    ||||||||||||||||||||||  |||||||||| |||||||||   ||||||||||||    
T  20569567 tgcttctgatcagtgttttcagcttaggagaaaacgaagaaaaagttaacacaattcaa 20569625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 6574981 - 6575017
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaag 37  Q
    |||||||||||||||||||||||  ||||||||||||    
T  6574981 ctgcttctgatcagtgttttcagcttaggagaaaaag 6575017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 17964127 - 17964179
Alignment:
Q  8 tgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    ||||||||||||||||  |||||||||| |||||||||   ||||||||||||    
T  17964127 tgatcagtgttttcagcttaggagaaaacgaagaaaaagttaacacaattcaa 17964179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 20152811 - 20152855
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaa 45  Q
    ||||||||||| ||||||||||   ||||||||||||||||||||    
T  20152811 ctgcttctgattagtgttttcaacttaggagaaaaagaagaaaaa 20152855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 21538004 - 21538064
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaat 61  Q
    |||||||| |||| |||||||||  || ||||||| ||||||||| | |||||||||||||    
T  21538004 ctgcttctaatcaatgttttcagcttaagagaaaacgaagaaaaagcaaacacaattcaat 21538064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 23185149 - 23185206
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    ||||||||||||| ||  |||||||  |||||||||||||||||| | ||||||||||||    
T  23185149 ctgcttctgatcaatgacttcagta--ggagaaaaagaagaaaaagctaacacaattcaa 23185206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 23596412 - 23596469
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    ||||||||||||| ||  |||||||  |||||||||||||||||| | ||||||||||||    
T  23596412 ctgcttctgatcaatgacttcagta--ggagaaaaagaagaaaaagctaacacaattcaa 23596469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 28712523 - 28712567
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaa 45  Q
    ||||||||||||| |||||||||  ||||||||||| ||||||||    
T  28712523 ctgcttctgatcaatgttttcagcttaggagaaaaataagaaaaa 28712567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 34322753 - 34322804
Alignment:
Q  8 tgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    ||||| ||||||||||| ||||||||||||||||||||  || ||||||||||    
T  34322753 tgatctgtgttttcagt-taggagaaaaagaagaaaaagtcagcacaattcaa 34322804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 8e-21; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 1577132 - 1577073
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||    
T  1577132 ctgcttctgatcagtgttttcagcataagagaaaaagaagaaaaaaccaacacaattcaa 1577073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 79 - 203
Target Start/End: Original strand, 9450929 - 9451052
Alignment:
Q  79 ttgttaattcaagttagaataagtgattagtgacttaat-caaggttgtttggttaagatcacatagtaatcaagttaattttgtttgttatgaagttag 177  Q
    |||||| |||||||||| |||| |||||||||| ||||| |||| ||||||| |||| |||||||||||||||||||| ||||| ||||||  |||||||    
T  9450929 ttgttatttcaagttagcataattgattagtgatttaattcaagtttgtttgattaa-atcacatagtaatcaagttagttttggttgtta-aaagttag 9451026  T
Q  178 ttacatttttgctagattttatcatt 203  Q
    ||||| ||||||| | ||||| ||||    
T  9451027 ttacagttttgcttgtttttagcatt 9451052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 2833939 - 2833880
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||||||||||||||||||||  |||||||||||||||||||| ||||||||||||||    
T  2833939 ctgcttctgatcagtgttttcagcttaggagaaaaagaagaaaaagccaacacaattcaa 2833880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 2 - 60
Target Start/End: Complemental strand, 7309072 - 7309015
Alignment:
Q  2 tgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||    
T  7309072 tgcttctgatcagtgttttcagt-taggagaaaacgaagaaaaaaccaacacaattcaa 7309015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 1899630 - 1899571
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||||||||||||||||||||  ||||||||||||||||||||  |||||||||||||    
T  1899630 ctgcttctgatcagtgttttcagcttaggagaaaaagaagaaaaagtcaacacaattcaa 1899571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 20959826 - 20959885
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||||||||||||||||||||  |||||||||| ||||||||||| ||||||||||||    
T  20959826 ctgcttctgatcagtgttttcagcttaggagaaaacgaagaaaaaactaacacaattcaa 20959885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 5 - 60
Target Start/End: Original strand, 22600986 - 22601041
Alignment:
Q  5 ttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    ||||||||| |||||||||  |||||||||||||||||||| ||||||||||||||    
T  22600986 ttctgatcaatgttttcaggttaggagaaaaagaagaaaaagccaacacaattcaa 22601041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 25449383 - 25449441
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||||||||||||||||||||| |||||||||||||| ||| | ||||||||||||||    
T  25449383 ctgcttctgatcagtgttttcagt-taggagaaaaagaaaaaatagccaacacaattcaa 25449441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 29215083 - 29215024
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||||||||||||||||||||  ||| |||||||||||||||||| || |||||||||    
T  29215083 ctgcttctgatcagtgttttcagcttagaagaaaaagaagaaaaaactaatacaattcaa 29215024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 44824549 - 44824607
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||||||||| ||||||||||| |||||||||||||||||||  ||||||||||||||    
T  44824549 ctgcttctgatctgtgttttcagt-taggagaaaaagaagaaaaggccaacacaattcaa 44824607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 59
Target Start/End: Complemental strand, 10250275 - 10250219
Alignment:
Q  2 tgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattca 59  Q
    ||||| ||||| || |||||||| ||||||||||||||||||||||||||||||||||    
T  10250275 tgcttttgatctgtattttcagt-taggagaaaaagaagaaaaaaccaacacaattca 10250219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 36133487 - 36133435
Alignment:
Q  8 tgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    ||||||||||||||||  || ||||||||||||||||| ||||||||||||||    
T  36133487 tgatcagtgttttcagcttaagagaaaaagaagaaaaagccaacacaattcaa 36133435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 22153109 - 22153050
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||||||||||  ||||||||   ||||||||||||||||||| ||||||||||||||    
T  22153109 ctgcttctgatcaaagttttcagctaaggagaaaaagaagaaaaagccaacacaattcaa 22153050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 22428134 - 22428193
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||||||||||||||||||||  |||||||||| |||||||||   ||||||||||||    
T  22428134 ctgcttctgatcagtgttttcagcttaggagaaaacgaagaaaaagtaaacacaattcaa 22428193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 23037319 - 23037378
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||||||||||||||||||||  || || |||||||||||||| ||||| ||||||||    
T  23037319 ctgcttctgatcagtgttttcagcttatgataaaaagaagaaaaagccaacccaattcaa 23037378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 56
Target Start/End: Complemental strand, 38281642 - 38281591
Alignment:
Q  5 ttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaat 56  Q
    |||||||||||||||||||  |||||||||| ||||||||| ||||||||||    
T  38281642 ttctgatcagtgttttcagcttaggagaaaaggaagaaaaagccaacacaat 38281591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 60
Target Start/End: Original strand, 22202678 - 22202736
Alignment:
Q  2 tgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    ||||| ||||||||||||||||| |||||||||| |||||||||   ||||||||||||    
T  22202678 tgcttatgatcagtgttttcagtttaggagaaaacgaagaaaaagataacacaattcaa 22202736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 57
Target Start/End: Original strand, 14294081 - 14294134
Alignment:
Q  4 cttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaatt 57  Q
    ||||||||||||||||||||  |||||||||| ||||||||| | |||||||||    
T  14294081 cttctgatcagtgttttcagcttaggagaaaatgaagaaaaagcaaacacaatt 14294134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 19214893 - 19214834
Alignment:
Q  1 ctgcttctgatca-gtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||||||| || |||||||||| ||||||||||||||||||||| | ||||||||||||    
T  19214893 ctgcttctgaacaagtgttttcag-ataggagaaaaagaagaaaaagcaaacacaattcaa 19214834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 30571485 - 30571430
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaatt 57  Q
    |||||||||||| || |||||||| |||||||||||||||||||  |||||||||||    
T  30571485 ctgcttctgatctgtattttcagt-taggagaaaaagaagaaaatgccaacacaatt 30571430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 2 - 45
Target Start/End: Original strand, 22202556 - 22202599
Alignment:
Q  2 tgcttctgatcagtgttttcagtataggagaaaaagaagaaaaa 45  Q
    ||||| ||||||||||||||||| |||||||||| |||||||||    
T  22202556 tgcttatgatcagtgttttcagtttaggagaaaacgaagaaaaa 22202599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 32786734 - 32786793
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    ||||||||||||||||||| ||   |||||||||||||| ||||| | ||||||||||||    
T  32786734 ctgcttctgatcagtgtttacaacttaggagaaaaagaaaaaaaatctaacacaattcaa 32786793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 60
Target Start/End: Original strand, 48571064 - 48571106
Alignment:
Q  17 ttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||||| ||||||||||||||||||||| |||||||||||||    
T  48571064 ttttcagt-taggagaaaaagaagaaaaaatcaacacaattcaa 48571106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 60
Target Start/End: Complemental strand, 30892347 - 30892289
Alignment:
Q  2 tgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    ||||||||||||||||||||||  ||| |||||  ||||||||| | ||||||||||||    
T  30892347 tgcttctgatcagtgttttcagcttagaagaaatcgaagaaaaagctaacacaattcaa 30892289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 60
Target Start/End: Original strand, 33257165 - 33257223
Alignment:
Q  2 tgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    ||||||||||| ||||||||||  |||||||||  ||||||||| | ||||||||||||    
T  33257165 tgcttctgatcggtgttttcagcttaggagaaagcgaagaaaaagctaacacaattcaa 33257223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 60
Target Start/End: Original strand, 33277337 - 33277395
Alignment:
Q  2 tgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    ||||||||||| ||||||||||  |||||||||  ||||||||| | ||||||||||||    
T  33277337 tgcttctgatcggtgttttcagcttaggagaaagcgaagaaaaagctaacacaattcaa 33277395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 2266365 - 2266325
Alignment:
Q  5 ttctgatcagtgttttcagtataggagaaaaagaagaaaaa 45  Q
    |||||||||||||||||||  |||||||||| |||||||||    
T  2266365 ttctgatcagtgttttcagcttaggagaaaacgaagaaaaa 2266325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 60
Target Start/End: Complemental strand, 10756713 - 10756657
Alignment:
Q  4 cttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    ||||| |||||||||||||   ||| |||||| ||||||||||| ||||||||||||    
T  10756713 cttctaatcagtgttttcaacttagaagaaaacgaagaaaaaactaacacaattcaa 10756657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 60
Target Start/End: Complemental strand, 12283666 - 12283618
Alignment:
Q  12 cagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    ||||||||||||  |||||||||| ||||||||| | ||||||||||||    
T  12283666 cagtgttttcagcttaggagaaaacgaagaaaaagctaacacaattcaa 12283618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0439 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0439
Description:

Target: scaffold0439; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 7535 - 7593
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||    
T  7535 ctgcttctgatcagtgttttcagt-taggagaaaaagaagaaaaagccaacacaattcaa 7593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0330 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 497 - 556
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||||| ||||||||    
T  497 ctgcttctgatcagtgttttcagcttaggagaaaaagaagaaaaaaccaactcaattcaa 556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 8e-18; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 2 - 60
Target Start/End: Complemental strand, 31487490 - 31487432
Alignment:
Q  2 tgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    ||||||||||||||||||||||  |||||||||| ||||||||||||||||||||||||    
T  31487490 tgcttctgatcagtgttttcagcttaggagaaaacgaagaaaaaaccaacacaattcaa 31487432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 79 - 245
Target Start/End: Original strand, 16117586 - 16117752
Alignment:
Q  79 ttgttaattcaagttagaataagtgattagtgacttaatcaagg-ttgtttggttaagatcacatagtaatcaagtta-attttgtttgttatgaagtta 176  Q
    ||||||||||||| |||  ||  |||||||||| ||||||||   |||||||||||| |||||||||||||||||||| |||| ||||||||  || ||     
T  16117586 ttgttaattcaagatagtgtagttgattagtgatttaatcaaaacttgtttggttaa-atcacatagtaatcaagttagatttagtttgttaa-aacttt 16117683  T
Q  177 gttacatttttgctagattttatcattaggttgtttgggtttgagagaggacttgcttctcaagaaact 245  Q
    |||||  ||||||| ||||||| ||| |||| ||| |||||||||||| |||||| | |||||| ||||    
T  16117684 gttacggttttgcttgattttagcataaggtagttggggtttgagagatgacttgttcctcaagcaact 16117752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 5 - 60
Target Start/End: Original strand, 13736964 - 13737019
Alignment:
Q  5 ttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||||||||||||||||| |||||||||||||||||||| | ||||||||||||    
T  13736964 ttctgatcagtgttttcagtttaggagaaaaagaagaaaaagctaacacaattcaa 13737019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 21100604 - 21100663
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||||||||||||||||||||  |||||||||| ||||||||||| ||||||||||||    
T  21100604 ctgcttctgatcagtgttttcagcttaggagaaaatgaagaaaaaactaacacaattcaa 21100663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 59 - 150
Target Start/End: Complemental strand, 26454427 - 26454335
Alignment:
Q  59 aattaagggaggatgttagtttgt-taattcaagttagaataagtgattagtgacttaatcaaggttgtttggttaagatcacatagtaatca 150  Q
    ||||||||||||| ||||||||   ||||||||||| ||||||||| | ||||||||| ||||   |||||| ||||||||||||||||||||    
T  26454427 aattaagggaggaagttagttttaataattcaagtttgaataagtgttcagtgacttagtcaaaactgtttgattaagatcacatagtaatca 26454335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 7746550 - 7746609
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||||||||||||||||||||  |||||||||| ||||||||| | ||||||||||||    
T  7746550 ctgcttctgatcagtgttttcagcttaggagaaaacgaagaaaaagcaaacacaattcaa 7746609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 9399467 - 9399526
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    ||||||||||| |||||||||||  |||||||||| ||||||||||| ||||||||||||    
T  9399467 ctgcttctgattagtgttttcagcttaggagaaaatgaagaaaaaactaacacaattcaa 9399526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 2 - 60
Target Start/End: Original strand, 19546385 - 19546443
Alignment:
Q  2 tgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||||||||||||| |||||  |||||| ||| ||||||||||||||||||||||||    
T  19546385 tgcttctgatcagtgtcttcagcttaggaggaaacgaagaaaaaaccaacacaattcaa 19546443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 2 - 60
Target Start/End: Complemental strand, 33932549 - 33932491
Alignment:
Q  2 tgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    ||||||||||||||||||||||  ||| ||||||| |||||||| ||||||||||||||    
T  33932549 tgcttctgatcagtgttttcagcttagaagaaaaaaaagaaaaagccaacacaattcaa 33932491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 59 - 154
Target Start/End: Original strand, 25632714 - 25632807
Alignment:
Q  59 aattaagggaggatgttagtttgttaattcaagttagaataagtgattagtgacttaatcaagg-ttgtttggttaagatcacatagtaatcaagtt 154  Q
    |||||||| |||||||||||||  ||||||||||||| |||  |||||||||  |||||||||| |||||||||||| | |||||||||| ||||||    
T  25632714 aattaaggaaggatgttagttt--taattcaagttagtatagttgattagtgttttaatcaaggcttgtttggttaa-aacacatagtaaccaagtt 25632807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 6498597 - 6498538
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||||| ||||||||||||||  |||||||||| ||||||||| | ||||||||||||    
T  6498597 ctgcttctaatcagtgttttcagcttaggagaaaacgaagaaaaagctaacacaattcaa 6498538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 11993171 - 11993113
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    ||||| |||||||||||||| ||| |||||||||||||||||||| | ||||||||||||    
T  11993171 ctgctcctgatcagtgtttttagt-taggagaaaaagaagaaaaagcaaacacaattcaa 11993113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 15516250 - 15516192
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||||||||  |||| |||||| |||||||||||||||||||| ||||||||||||||    
T  15516250 ctgcttctgatatgtgtcttcagt-taggagaaaaagaagaaaaagccaacacaattcaa 15516192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 60
Target Start/End: Original strand, 6513285 - 6513343
Alignment:
Q  2 tgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    ||||| ||||||||||||||||  || ||||||| ||||||||| ||||||||||||||    
T  6513285 tgcttatgatcagtgttttcagcttaagagaaaacgaagaaaaagccaacacaattcaa 6513343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 60
Target Start/End: Complemental strand, 16606751 - 16606705
Alignment:
Q  14 gtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    ||||||||||| |||||||||| |||||||||| |||||||||||||    
T  16606751 gtgttttcagtttaggagaaaacgaagaaaaaaacaacacaattcaa 16606705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 60
Target Start/End: Original strand, 22000882 - 22000940
Alignment:
Q  2 tgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    ||||||||||||||||||||||  |||||||||| ||||||||| | ||||||| ||||    
T  22000882 tgcttctgatcagtgttttcagcttaggagaaaacgaagaaaaagctaacacaactcaa 22000940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 60
Target Start/End: Original strand, 23413833 - 23413889
Alignment:
Q  4 cttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||| |||||||||||||  |||||||||| ||||||||| | ||||||||||||    
T  23413833 cttctggtcagtgttttcagcttaggagaaaacgaagaaaaagctaacacaattcaa 23413889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 61
Target Start/End: Complemental strand, 28138877 - 28138822
Alignment:
Q  5 ttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaat 61  Q
    |||||||| || |||||||| ||||||||||||||||||||  ||||||||||||||    
T  28138877 ttctgatctgtattttcagt-taggagaaaaagaagaaaaagtcaacacaattcaat 28138822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 30116728 - 30116783
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaatt 57  Q
    |||||||||||| || |||||||| |||||||||||||||||||| |||||| ||||    
T  30116728 ctgcttctgatctgtattttcagt-taggagaaaaagaagaaaaagccaacagaatt 30116783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 33021942 - 33021898
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaa 45  Q
    |||||||||||||||||||||||  |||||||||||| |||||||    
T  33021942 ctgcttctgatcagtgttttcagcttaggagaaaaaggagaaaaa 33021898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 2 - 60
Target Start/End: Original strand, 90288 - 90347
Alignment:
Q  2 tgcttctgatcagtgtttt-cagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    ||||||||||||||||||| |||  |||||||||| ||||||||| | ||||||||||||    
T  90288 tgcttctgatcagtgtttttcagcttaggagaaaacgaagaaaaagctaacacaattcaa 90347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 21076037 - 21076096
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||||||||||||||| ||||  |||||||||| ||||||||| | |||| |||||||    
T  21076037 ctgcttctgatcagtgttatcagcttaggagaaaacgaagaaaaagctaacataattcaa 21076096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 26764753 - 26764695
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    ||||||||||||  |||||||||| ||||||||||||||||||||  |||| ||||||||    
T  26764753 ctgcttctgatctatgttttcagt-taggagaaaaagaagaaaaagtcaacgcaattcaa 26764695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 30742222 - 30742163
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||||||||||||||||||||  |   ||||||||||||||||  |||||||||||||    
T  30742222 ctgcttctgatcagtgttttcagctttaaagaaaaagaagaaaaagtcaacacaattcaa 30742163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 37395450 - 37395391
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||||| ||||||||||||||  |||||||| |||||||||||   ||||||||||||    
T  37395450 ctgcttctaatcagtgttttcagcttaggagaagaagaagaaaaagtaaacacaattcaa 37395391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 21199867 - 21199924
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    ||||||||||||||||  |||||||  |||||||| ||||||||| | ||||||||||||    
T  21199867 ctgcttctgatcagtgacttcagta--ggagaaaacgaagaaaaagctaacacaattcaa 21199924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 23911 - 23853
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||    
T  23911 ctgcttctgatctgtattttcagt-taggagaaaaagaagaaaaaaccaacacaattcaa 23853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0479 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0479
Description:

Target: scaffold0479; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 9251 - 9192
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||||||||||||||||||||  |||||||||| ||||||||| | ||||||||||||    
T  9251 ctgcttctgatcagtgttttcagcttaggagaaaacgaagaaaaagctaacacaattcaa 9192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0471 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0471
Description:

Target: scaffold0471; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 2738 - 2680
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||||||||| ||||||||||| |||||||||| ||||||||| ||||||||||||||    
T  2738 ctgcttctgatctgtgttttcagt-taggagaaaatgaagaaaaagccaacacaattcaa 2680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0315 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0315
Description:

Target: scaffold0315; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 7954 - 7895
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||||||||||||||||||||  |||||||||| ||||||||| | ||||||||||||    
T  7954 ctgcttctgatcagtgttttcagcttaggagaaaacgaagaaaaagctaacacaattcaa 7895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0290 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0290
Description:

Target: scaffold0290; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 19480 - 19539
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    ||||||||||| ||||||||||| ||| ||||||| ||||||||| ||||||||||||||    
T  19480 ctgcttctgattagtgttttcagcataagagaaaacgaagaaaaagccaacacaattcaa 19539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 111426 - 111485
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||||||||||||||||||||  ||||| | |||||||||||| ||||||||||||||    
T  111426 ctgcttctgatcagtgttttcagcttaggaaagaaagaagaaaaagccaacacaattcaa 111485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 110418 - 110476
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||||||||| || |||||||| |||||||||| ||||||||||||||||||||||||    
T  110418 ctgcttctgatctgtattttcagt-taggagaaaacgaagaaaaaaccaacacaattcaa 110476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 60
Target Start/End: Original strand, 20294 - 20350
Alignment:
Q  4 cttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||||||||| |||| ||  |||||||||| ||||||||||| ||||||||||||    
T  20294 cttctgatcagtttttttagcttaggagaaaacgaagaaaaaactaacacaattcaa 20350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 83646 - 83586
Alignment:
Q  1 ctgcttctgatcagtgtttt-cagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||||||||||||||||| |||  |||||||||||||||||||| | ||||||||||||    
T  83646 ctgcttctgatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 83586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 60
Target Start/End: Complemental strand, 83579 - 83522
Alignment:
Q  4 cttctgatcagtgtttt-cagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    ||||||||||||||||| |||  |||||||||||||||||||| | ||||||||||||    
T  83579 cttctgatcagtgtttttcagcttaggagaaaaagaagaaaaagctaacacaattcaa 83522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 211644 - 211584
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaat 61  Q
    |||||||||||||||||||||||  |||||||||| ||| ||||| | |||||||||||||    
T  211644 ctgcttctgatcagtgttttcagcttaggagaaaacgaataaaaagctaacacaattcaat 211584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0859 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0859
Description:

Target: scaffold0859; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 2254 - 2195
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    ||||||||||||||||| |||||  ||||||||||||||||||||   ||||||||||||    
T  2254 ctgcttctgatcagtgtattcagcttaggagaaaaagaagaaaaagaaaacacaattcaa 2195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0210 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0210
Description:

Target: scaffold0210; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 906 - 847
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||||||||||||||||||||  |||||||||| |||||||||   ||||||||||||    
T  906 ctgcttctgatcagtgttttcagcttaggagaaaacgaagaaaaagttaacacaattcaa 847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0205 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0205
Description:

Target: scaffold0205; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 778 - 837
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||||||||||||||||||||  ||||||||| ||||||||||   ||||||||||||    
T  778 ctgcttctgatcagtgttttcagcttaggagaaatagaagaaaaagttaacacaattcaa 837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 17615 - 17557
Alignment:
Q  2 tgcttctgatcagtgttttcagtataggagaaa--aagaagaaaaaaccaacacaattc 58  Q
    ||||||||||||||||||||||  |||||||||  ||||||||||| ||||||||||||    
T  17615 tgcttctgatcagtgttttcagcttaggagaaaagaagaagaaaaagccaacacaattc 17557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 66231 - 66289
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||||||||| |  |||||||| |||||||||||||||||||| ||||||||||||||    
T  66231 ctgcttctgatctgcattttcagt-taggagaaaaagaagaaaaagccaacacaattcaa 66289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 210689 - 210631
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||||||||| || |||||||| ||||||||||| |||||||| ||||||||||||||    
T  210689 ctgcttctgatctgtattttcagt-taggagaaaaacaagaaaaagccaacacaattcaa 210631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 60
Target Start/End: Original strand, 378378 - 378436
Alignment:
Q  2 tgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||||||| |||||||||||  |||||||||| ||||||||| | ||||||||||||    
T  378378 tgcttctgattagtgttttcagattaggagaaaacgaagaaaaagctaacacaattcaa 378436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 5 - 60
Target Start/End: Complemental strand, 219520 - 219465
Alignment:
Q  5 ttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||||||||||||||||  |||||||||| ||| ||||||  ||||||||||||    
T  219520 ttctgatcagtgttttcagcttaggagaaaacgaaaaaaaaagtaacacaattcaa 219465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0567 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0567
Description:

Target: scaffold0567; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 60
Target Start/End: Complemental strand, 9182 - 9124
Alignment:
Q  2 tgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    ||||||||||||||||||||||  |||||||||| ||||||||| |  |||||||||||    
T  9182 tgcttctgatcagtgttttcagcttaggagaaaacgaagaaaaagcttacacaattcaa 9124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0530 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0530
Description:

Target: scaffold0530; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 60
Target Start/End: Original strand, 2841 - 2899
Alignment:
Q  2 tgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||||||| |||||||||||  |||||||||| ||||||||| | ||||||||||||    
T  2841 tgcttctgataagtgttttcagcttaggagaaaacgaagaaaaagctaacacaattcaa 2899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0163 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0163
Description:

Target: scaffold0163; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 60
Target Start/End: Complemental strand, 25712 - 25654
Alignment:
Q  2 tgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    ||||||||||||||||||||||  |||||||||| |||||||||   ||||||||||||    
T  25712 tgcttctgatcagtgttttcagcttaggagaaaacgaagaaaaagtaaacacaattcaa 25654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 60
Target Start/End: Complemental strand, 48599 - 48542
Alignment:
Q  3 gcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    ||||||||||||||||| |||  |||||||||| ||||||||| | ||||||||||||    
T  48599 gcttctgatcagtgtttccagcttaggagaaaatgaagaaaaagctaacacaattcaa 48542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 60
Target Start/End: Complemental strand, 31873 - 31815
Alignment:
Q  2 tgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    ||||||||||||||||||  ||  |||||||||| ||||||||| | ||||||||||||    
T  31873 tgcttctgatcagtgtttcaagcttaggagaaaacgaagaaaaagctaacacaattcaa 31815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1359 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold1359
Description:

Target: scaffold1359; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 32 - 91
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||||||||||||||||| ||  |||||||||| |||||||||   ||||||||||||    
T  32 ctgcttctgatcagtgtttttagattaggagaaaacgaagaaaaagtaaacacaattcaa 91  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0607 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0607
Description:

Target: scaffold0607; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 5417 - 5359
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    ||||||||||||  | |||||||| ||||| |||||||||||||| ||||||||||||||    
T  5417 ctgcttctgatctatattttcagt-taggataaaaagaagaaaaagccaacacaattcaa 5359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0488 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0488
Description:

Target: scaffold0488; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 11467 - 11425
Alignment:
Q  17 ttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||||| |||||||||||||||||||||| ||||||||||||    
T  11467 ttttcagt-taggagaaaaagaagaaaaaactaacacaattcaa 11425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0280 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0280
Description:

Target: scaffold0280; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 3509 - 3567
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||||||||| || |||||||| ||||||||||||||||||||   ||||||||||||    
T  3509 ctgcttctgatctgtattttcagt-taggagaaaaagaagaaaaagaaaacacaattcaa 3567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 24602 - 24660
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    ||||||||||| |||||||||||| |||||||||||||||||| | | |||| |||||||    
T  24602 ctgcttctgattagtgttttcagt-taggagaaaaagaagaaagagcaaacataattcaa 24660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 7163 - 7120
Alignment:
Q  2 tgcttctgatcagtgttttcagtataggagaaaaagaagaaaaa 45  Q
    ||||||||||||||||||||||  ||||||||||| ||||||||    
T  7163 tgcttctgatcagtgttttcagcttaggagaaaaataagaaaaa 7120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 245
Target Start/End: Complemental strand, 13995 - 13887
Alignment:
Q  136 atcacatagtaatcaagttaatttt-gtttgttatgaagttagttacatttttgctagattttatcattaggttgtttgggtttgagagaggacttgctt 234  Q
    |||||||||||||||||||| |||| ||| ||||  ||||| |||||| ||||||| | ||||| ||| ||||  || |||||||||||| |||||| ||    
T  13995 atcacatagtaatcaagttagttttggttcgtta-aaagtttgttacagttttgcttgttttta-cataaggtaattagggtttgagagatgacttgttt 13898  T
Q  235 ctcaagaaact 245  Q
    |||||| ||||    
T  13897 ctcaagcaact 13887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 60
Target Start/End: Complemental strand, 14398 - 14340
Alignment:
Q  2 tgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    ||||| |||||| |||||||||  |||||||||| ||||||||| | ||||||||||||    
T  14398 tgcttttgatcattgttttcagcttaggagaaaacgaagaaaaagctaacacaattcaa 14340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 60
Target Start/End: Complemental strand, 36713 - 36655
Alignment:
Q  2 tgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    ||||| |||| |||||||||||  |||||||||| ||||||||| | ||||||||||||    
T  36713 tgcttatgattagtgttttcagcttaggagaaaacgaagaaaaagctaacacaattcaa 36655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 60
Target Start/End: Complemental strand, 134773 - 134715
Alignment:
Q  2 tgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    ||||| |||| |||||||||||  |||||||||| ||||||||| | ||||||||||||    
T  134773 tgcttatgattagtgttttcagcttaggagaaaacgaagaaaaagctaacacaattcaa 134715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0217 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 755 - 800
Alignment:
Q  1 ctgcttctgatcagtgtttt-cagtataggagaaaaagaagaaaaa 45  Q
    |||||||||||||||||||| |||  ||||||||||||||||||||    
T  755 ctgcttctgatcagtgtttttcagcttaggagaaaaagaagaaaaa 800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0758 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0758
Description:

Target: scaffold0758; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 60
Target Start/End: Complemental strand, 3568 - 3540
Alignment:
Q  32 aaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||||||||||||||||||||||||||    
T  3568 aaaaagaagaaaaaaccaacacaattcaa 3540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 7115 - 7055
Alignment:
Q  1 ctgcttctgatcagtgtttt-cagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    |||||||||||||||||||| |||  |  ||||||||||||||||| | ||||||||||||    
T  7115 ctgcttctgatcagtgtttttcagcttccgagaaaaagaagaaaaagctaacacaattcaa 7055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0081 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0081
Description:

Target: scaffold0081; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 13277 - 13220
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaaaccaacacaattcaa 60  Q
    ||||||||||||||||  |||||||  |||||||| ||||||||| | ||||||||||||    
T  13277 ctgcttctgatcagtgacttcagta--ggagaaaacgaagaaaaagctaacacaattcaa 13220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 102840 - 102796
Alignment:
Q  1 ctgcttctgatcagtgttttcagtataggagaaaaagaagaaaaa 45  Q
    |||||| ||||||||||||||||  |||||||||| |||||||||    
T  102840 ctgcttatgatcagtgttttcagcttaggagaaaacgaagaaaaa 102796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University