View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7763_low_25 (Length: 313)
Name: NF7763_low_25
Description: NF7763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7763_low_25 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 16 - 298
Target Start/End: Complemental strand, 31609812 - 31609530
Alignment:
| Q |
16 |
acatcacctctctgcaagtgtagcatcaaaatcagacaatgaacctctaccactttcaaattttttcattgtacccaatgacggtactatcaacatagag |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
31609812 |
acatcacctctctgcaagtgtagcatcaaaatcagacaatgaacctctaccactttcaaattttttcatcgtacccaatgacggtactatcaacatagag |
31609713 |
T |
|
| Q |
116 |
ggtgcaaactcttggttctcttccacgaccaaagctttctcactttgtaacagaatcttcttattttcatgactagtaacagaatcgttattttttgttg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
31609712 |
ggtgcaaactcttggttctcttccacgaccaaagctttctcactttgtaacagaatcttcttattttcatgactagtaacagaatcattattttttgttg |
31609613 |
T |
|
| Q |
216 |
aagattgatgaatccttttggcctttcttttcttcttcttagacttcacttgacccatgcaagaaaccttaggagaggatggt |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31609612 |
aagattgatgaatccttttggcctttcttttcttcttcttagacttcacttgacccatgcaagaaaccttaggagaggatggt |
31609530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University