View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7763_low_32 (Length: 253)

Name: NF7763_low_32
Description: NF7763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7763_low_32
NF7763_low_32
[»] chr1 (4 HSPs)
chr1 (5-250)||(3547565-3547807)
chr1 (94-174)||(12971394-12971473)
chr1 (94-174)||(27703526-27703605)
chr1 (94-174)||(50552483-50552562)
[»] chr8 (3 HSPs)
chr8 (95-145)||(5971758-5971808)
chr8 (94-174)||(34523948-34524027)
chr8 (94-174)||(3471588-3471667)
[»] chr7 (3 HSPs)
chr7 (94-174)||(26282539-26282618)
chr7 (94-149)||(26633371-26633430)
chr7 (95-174)||(40001694-40001772)
[»] chr5 (3 HSPs)
chr5 (94-174)||(43511606-43511685)
chr5 (94-172)||(17513933-17514010)
chr5 (101-149)||(524857-524905)
[»] chr2 (5 HSPs)
chr2 (94-149)||(27302525-27302584)
chr2 (97-174)||(15457488-15457564)
chr2 (94-174)||(19367416-19367495)
chr2 (97-151)||(12072504-12072558)
chr2 (97-174)||(13020411-13020487)
[»] chr6 (6 HSPs)
chr6 (101-149)||(31234919-31234967)
chr6 (94-174)||(628092-628171)
chr6 (94-174)||(12614713-12614792)
chr6 (97-174)||(2618343-2618419)
chr6 (94-149)||(6360768-6360826)
chr6 (101-149)||(31244056-31244103)
[»] chr4 (2 HSPs)
chr4 (94-175)||(5545316-5545396)
chr4 (94-149)||(45172642-45172701)
[»] chr3 (6 HSPs)
chr3 (90-138)||(7648387-7648435)
chr3 (94-174)||(51939553-51939632)
chr3 (94-149)||(13401467-13401526)
chr3 (96-149)||(4207357-4207410)
chr3 (94-148)||(41707052-41707110)
chr3 (94-151)||(25599083-25599144)
[»] scaffold0126 (1 HSPs)
scaffold0126 (114-174)||(16698-16753)


Alignment Details
Target: chr1 (Bit Score: 182; Significance: 2e-98; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 5 - 250
Target Start/End: Original strand, 3547565 - 3547807
Alignment:
Q  5 gaagtaaaagcttaacgacagcgcggtaaaatttacctaatagtgtcatttcagaaaagggaaaaggaatattttctgcagacaaggagatgattgttgt 104  Q
    |||||||||||||||||| || | ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  3547565 gaagtaaaagcttaacgaaagagaggtaaaatttacctaatagtgtcgtttcggaaaagggaaaaggaatattttctgcagacaaggagatgattgttgt 3547664  T
Q  105 gattctttaaaatagcttttcgaattgaccgattaagtgattatatataacaaattgggggtggtttgatga-attgataacatctgattcggtggaaac 203  Q
    |||| ||||||||||||||||||||||||| ||||||||||    |||||||||||| |||||||||||||| ||||| |||||||||||||||||||||    
T  3547665 gattatttaaaatagcttttcgaattgaccaattaagtgat----tataacaaattgagggtggtttgatgatattgacaacatctgattcggtggaaac 3547760  T
Q  204 agtgtgtgagatggaggtcggtgatcagaatcggttgagatggtggt 250  Q
     ||||||||||||||||||||||||||||||||||||||||||||||    
T  3547761 ggtgtgtgagatggaggtcggtgatcagaatcggttgagatggtggt 3547807  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 94 - 174
Target Start/End: Complemental strand, 12971473 - 12971394
Alignment:
Q  94 atgattgttgtgattcttta----aaatagcttttcgaattgaccgattaagtgattatatataacaaattgggggtggtttgat 174  Q
    |||||||||||||||||||     |||||||||||| ||||||| ||||||||||||||     |||||||||||||||||||||    
T  12971473 atgattgttgtgattctttcgatgaaatagcttttcaaattgactgattaagtgattat-----acaaattgggggtggtttgat 12971394  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 174
Target Start/End: Original strand, 27703526 - 27703605
Alignment:
Q  94 atgattgttgtgattcttta----aaatagcttttcgaattgaccgattaagtgattatatataacaaattgggggtggtttgat 174  Q
    |||||||||||||||||||     |||||||||| | ||||||| ||||||||||||||     |||||||||||||||||||||    
T  27703526 atgattgttgtgattctttcgatgaaatagctttccaaattgactgattaagtgattat-----acaaattgggggtggtttgat 27703605  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 174
Target Start/End: Complemental strand, 50552562 - 50552483
Alignment:
Q  94 atgattgttgtgattctttaaa----atagcttttcgaattgaccgattaagtgattatatataacaaattgggggtggtttgat 174  Q
    ||||||||||||||||||| ||    ||| |||||| ||||||||||||||||||||||     ||||||| |||||||||||||    
T  50552562 atgattgttgtgattctttcaatgaaataacttttcaaattgaccgattaagtgattat-----acaaattaggggtggtttgat 50552483  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 95 - 145
Target Start/End: Original strand, 5971758 - 5971808
Alignment:
Q  95 tgattgttgtgattctttaaaatagcttttcgaattgaccgattaagtgat 145  Q
    ||||||||||||||||||||||||||||||  ||||||| |||||||||||    
T  5971758 tgattgttgtgattctttaaaatagctttttaaattgactgattaagtgat 5971808  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 94 - 174
Target Start/End: Original strand, 34523948 - 34524027
Alignment:
Q  94 atgattgttgtgattctttaaa----atagcttttcgaattgaccgattaagtgattatatataacaaattgggggtggtttgat 174  Q
    ||||||||||||||||||| ||    |||||||||| ||||||| ||||||||||||||     |||||||||||||||||||||    
T  34523948 atgattgttgtgattctttcaatgaaatagcttttcaaattgactgattaagtgattat-----acaaattgggggtggtttgat 34524027  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 174
Target Start/End: Complemental strand, 3471667 - 3471588
Alignment:
Q  94 atgattgttgtgattctttaaa----atagcttttcgaattgaccgattaagtgattatatataacaaattgggggtggtttgat 174  Q
    ||||||||||||||||||| ||    |||||||||| ||||||| ||||||||||||||     ||||||| |||||||||||||    
T  3471667 atgattgttgtgattctttcaatgaaatagcttttcaaattgactgattaagtgattat-----acaaattaggggtggtttgat 3471588  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 94 - 174
Target Start/End: Original strand, 26282539 - 26282618
Alignment:
Q  94 atgattgttgtgattctttaaa----atagcttttcgaattgaccgattaagtgattatatataacaaattgggggtggtttgat 174  Q
    ||||||||||||||||||| ||    |||||||||| ||||||| ||||||||||||||     |||||||||||||||||||||    
T  26282539 atgattgttgtgattctttcaatgaaatagcttttcaaattgactgattaagtgattat-----acaaattgggggtggtttgat 26282618  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 149
Target Start/End: Complemental strand, 26633430 - 26633371
Alignment:
Q  94 atgattgttgtgattctttaaa----atagcttttcgaattgaccgattaagtgattata 149  Q
    ||||||||||||||||||| ||    |||||||||| ||||||| |||||||||||||||    
T  26633430 atgattgttgtgattctttcaatgaaatagcttttcaaattgactgattaagtgattata 26633371  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 174
Target Start/End: Original strand, 40001694 - 40001772
Alignment:
Q  95 tgattgttgtgattctttaaa----atagcttttcgaattgaccgattaagtgattatatataacaaattgggggtggtttgat 174  Q
    |||||||||||||||||| ||    |||||||||| ||||||| ||||||||||||||     ||||||||| |||||||||||    
T  40001694 tgattgttgtgattctttcaatgaaatagcttttcaaattgactgattaagtgattat-----acaaattggaggtggtttgat 40001772  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 94 - 174
Target Start/End: Complemental strand, 43511685 - 43511606
Alignment:
Q  94 atgattgttgtgattcttta----aaatagcttttcgaattgaccgattaagtgattatatataacaaattgggggtggtttgat 174  Q
    |||||||||||||||||||     |||||||||||| ||||||| ||||||||||||||     |||||||||||||||||||||    
T  43511685 atgattgttgtgattctttccatgaaatagcttttcaaattgactgattaagtgattat-----acaaattgggggtggtttgat 43511606  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 94 - 172
Target Start/End: Original strand, 17513933 - 17514010
Alignment:
Q  94 atgattgttgtgattctttaa----aatagcttttcgaattgaccgattaagtgattatatataacaaattgggggtggtttg 172  Q
    ||||||||||||||||||| |    |||| |||||| ||||||| ||||||||||||||     |||||||||||||||||||    
T  17513933 atgattgttgtgattctttcagtgaaataacttttcaaattgactgattaagtgattat-----acaaattgggggtggtttg 17514010  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 149
Target Start/End: Original strand, 524857 - 524905
Alignment:
Q  101 ttgtgattctttaaaatagcttttcgaattgaccgattaagtgattata 149  Q
    ||||||||||||||||||| ||||  ||||||  |||||||||||||||    
T  524857 ttgtgattctttaaaatagttttttaaattgattgattaagtgattata 524905  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 94 - 149
Target Start/End: Original strand, 27302525 - 27302584
Alignment:
Q  94 atgattgttgtgattctttaaa----atagcttttcgaattgaccgattaagtgattata 149  Q
    ||||||||||||||||||| ||    |||||||||| |||||||||||||||||||||||    
T  27302525 atgattgttgtgattcttttaatgatatagcttttcaaattgaccgattaagtgattata 27302584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 174
Target Start/End: Complemental strand, 15457564 - 15457488
Alignment:
Q  97 attgttgtgattcttt----aaaatagcttttcgaattgaccgattaagtgattatatataacaaattgggggtggtttgat 174  Q
    ||||||||||||||||    ||||||||||||| ||||||| ||||||||||||||     ||||||||||||| |||||||    
T  15457564 attgttgtgattctttcaataaaatagcttttcaaattgactgattaagtgattat-----acaaattgggggtagtttgat 15457488  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 174
Target Start/End: Original strand, 19367416 - 19367495
Alignment:
Q  94 atgattgttgtgattctttaaa----atagcttttcgaattgaccgattaagtgattatatataacaaattgggggtggtttgat 174  Q
    ||||||||||||||||||| ||    |||||||||| ||||||| ||||||||||||||     ||||||| |||||||||||||    
T  19367416 atgattgttgtgattctttcaatgaaatagcttttcaaattgactgattaagtgattat-----acaaattaggggtggtttgat 19367495  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 151
Target Start/End: Complemental strand, 12072558 - 12072504
Alignment:
Q  97 attgttgtgattctttaaaatagcttttcgaattgaccgattaagtgattatata 151  Q
    |||||||||||||||| ||||| |||||  ||||||  |||||||||||||||||    
T  12072558 attgttgtgattctttgaaataactttttaaattgattgattaagtgattatata 12072504  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 174
Target Start/End: Complemental strand, 13020487 - 13020411
Alignment:
Q  97 attgttgtgattctttaaa----atagcttttcgaattgaccgattaagtgattatatataacaaattgggggtggtttgat 174  Q
    |||||||||||||||||||    |||||||| | ||||||| ||||||||||||||     ||||||| |||||||||||||    
T  13020487 attgttgtgattctttaaatgaaatagctttccaaattgactgattaagtgattat-----acaaattaggggtggtttgat 13020411  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 149
Target Start/End: Complemental strand, 31234967 - 31234919
Alignment:
Q  101 ttgtgattctttaaaatagcttttcgaattgaccgattaagtgattata 149  Q
    |||||||||||| |||||||||||| ||||||  |||||||||||||||    
T  31234967 ttgtgattctttgaaatagcttttcaaattgattgattaagtgattata 31234919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 174
Target Start/End: Original strand, 628092 - 628171
Alignment:
Q  94 atgattgttgtgattctttaaa----atagcttttcgaattgaccgattaagtgattatatataacaaattgggggtggtttgat 174  Q
    ||||||||||||||||||| ||    |||||||||| ||||||| ||||||||||||||     ||||||| |||||||||||||    
T  628092 atgattgttgtgattctttcaatgaaatagcttttcaaattgactgattaagtgattat-----acaaattaggggtggtttgat 628171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 174
Target Start/End: Original strand, 12614713 - 12614792
Alignment:
Q  94 atgattgttgtgattctttaaa----atagcttttcgaattgaccgattaagtgattatatataacaaattgggggtggtttgat 174  Q
    ||||||||||||||||||| ||    |||||||||| ||||||| ||||||||||||||     ||||||| |||||||||||||    
T  12614713 atgattgttgtgattctttcaatgaaatagcttttcaaattgactgattaagtgattat-----acaaattaggggtggtttgat 12614792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 174
Target Start/End: Complemental strand, 2618419 - 2618343
Alignment:
Q  97 attgttgtgattctt----taaaatagcttttcgaattgaccgattaagtgattatatataacaaattgggggtggtttgat 174  Q
    |||||||||||||||    | |||||||||||| ||||||| ||||||||||||||     ||||||| |||||||||||||    
T  2618419 attgttgtgattctttcaatgaaatagcttttcaaattgactgattaagtgattat-----acaaattaggggtggtttgat 2618343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 149
Target Start/End: Complemental strand, 6360826 - 6360768
Alignment:
Q  94 atgattgttgtgattctttaaa---atagcttttcgaattgaccgattaagtgattata 149  Q
    ||||||||||||||||||| ||   ||| |||||| ||||||| |||||||||||||||    
T  6360826 atgattgttgtgattctttcaatgaataacttttcaaattgactgattaagtgattata 6360768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 149
Target Start/End: Complemental strand, 31244103 - 31244056
Alignment:
Q  101 ttgtgattctttaaaatagcttttcgaattgaccgattaagtgattata 149  Q
    |||||||||||| |||||||||||| ||||||  |||||||||||||||    
T  31244103 ttgtgattctttgaaatagcttttc-aattgattgattaagtgattata 31244056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 175
Target Start/End: Complemental strand, 5545396 - 5545316
Alignment:
Q  94 atgattgttgtgattctttaaa----atagcttttcgaattgaccgattaagtgattatatataacaaattgggggtggtttgatg 175  Q
    ||||||||||||||||||| ||    |||||||| | ||||||||||||||||||||||     ||||||||| ||||||||||||    
T  5545396 atgattgttgtgattcttttaatgaaatagctttccaaattgaccgattaagtgattat-----acaaattggtggtggtttgatg 5545316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 149
Target Start/End: Original strand, 45172642 - 45172701
Alignment:
Q  94 atgattgttgtgattcttta----aaatagcttttcgaattgaccgattaagtgattata 149  Q
    |||||||||||||||||||     |||||||||||| ||||||| |||||||||||||||    
T  45172642 atgattgttgtgattctttccatgaaatagcttttcaaattgactgattaagtgattata 45172701  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 138
Target Start/End: Complemental strand, 7648435 - 7648387
Alignment:
Q  90 ggagatgattgttgtgattctttaaaatagcttttcgaattgaccgatt 138  Q
    ||||||||||||||||||||||| ||||||  |||| ||||||||||||    
T  7648435 ggagatgattgttgtgattctttgaaatagaatttcaaattgaccgatt 7648387  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 174
Target Start/End: Original strand, 51939553 - 51939632
Alignment:
Q  94 atgattgttgtgattctttaaa----atagcttttcgaattgaccgattaagtgattatatataacaaattgggggtggtttgat 174  Q
    ||||||||||||||||||| ||    |||||||||| ||||||| ||||||||||||||     ||||||| |||||||||||||    
T  51939553 atgattgttgtgattctttcaatgaaatagcttttcaaattgactgattaagtgattat-----acaaattaggggtggtttgat 51939632  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 149
Target Start/End: Complemental strand, 13401526 - 13401467
Alignment:
Q  94 atgattgttgtgattctt----taaaatagcttttcgaattgaccgattaagtgattata 149  Q
    ||||||||||||||||||    | |||||||||||| ||||||| |||||||||||||||    
T  13401526 atgattgttgtgattcttccaatgaaatagcttttcaaattgactgattaagtgattata 13401467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 96 - 149
Target Start/End: Original strand, 4207357 - 4207410
Alignment:
Q  96 gattgttgtgattctttaaaatagcttttcgaattgaccgattaagtgattata 149  Q
    ||||||||||||||||| ||||| |||| | ||||||  |||||||||||||||    
T  4207357 gattgttgtgattctttgaaatatctttccaaattgaatgattaagtgattata 4207410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 94 - 148
Target Start/End: Original strand, 41707052 - 41707110
Alignment:
Q  94 atgattgttgtgattctttaaa----atagcttttcgaattgaccgattaagtgattat 148  Q
    ||||||||||||||||||| ||    |||||||||| ||||||| ||||||||||||||    
T  41707052 atgattgttgtgattctttcaatgaaatagcttttcaaattgactgattaagtgattat 41707110  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 151
Target Start/End: Original strand, 25599083 - 25599144
Alignment:
Q  94 atgattgttgtgattctttaaa----atagcttttcgaattgaccgattaagtgattatata 151  Q
    ||||||||||||||||||| ||    |||| ||||| ||||||| |||||||||||||||||    
T  25599083 atgattgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattatata 25599144  T

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Target: scaffold0126 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 174
Target Start/End: Complemental strand, 16753 - 16698
Alignment:
Q  114 aaatagcttttcgaattgaccgattaagtgattatatataacaaattgggggtggtttgat 174  Q
    |||||||||||| ||||||| ||||||||||||||     ||||||| |||||||||||||    
T  16753 aaatagcttttcaaattgactgattaagtgattat-----acaaattaggggtggtttgat 16698  T

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