View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7763_low_34 (Length: 249)
Name: NF7763_low_34
Description: NF7763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7763_low_34 |
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Alignment Details
Target: chr5 (Bit Score: 159; Significance: 9e-85; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 15 - 233
Target Start/End: Original strand, 36514086 - 36514306
Alignment:
| Q |
15 |
tcacaaatcttctttgatgcaggtgactgaataagttcttccaaaaccttgtttactgcatcagcagtagcagcagcgtcctgcgcaagcattatcgatt |
114 |
Q |
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| T |
36514086 |
tcacaaatcttctttgatgcagttgactgaataagttcttccaaaaccttgtttactgcatgagcagtagcagcagcgtcctgcgccagcattatcga-- |
36514183 |
T |
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| Q |
115 |
ttttaaaaagattattagaaagaaattgaaat----atgcatatatacctgtcgaggatcttttatttcttggaaatcttgttgatcatcatcgaaatcg |
210 |
Q |
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| T |
36514184 |
ttttaaacagattattagaaagaaattgaaatatgcatgcatatatacctgtcgaggatcttttatttcttgaaaatcttgttcatcatcatcggaatcg |
36514283 |
T |
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| Q |
211 |
ggtatactttcatcggacttgat |
233 |
Q |
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| T |
36514284 |
ggtatactttcattggacctgat |
36514306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 16 - 116
Target Start/End: Complemental strand, 4233825 - 4233725
Alignment:
| Q |
16 |
cacaaatcttctttgatgcaggtgactgaataagttcttccaaaaccttgtttactgcatcagcagtagcagcagcgtcctgcgcaagcattatcgattt |
115 |
Q |
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| T |
4233825 |
cacaaatcttctttgatgcagatgactgaataaattcttccaaaaccttgtttactgcatcagcagtagcagcagcgtcctgcgcctgcattatcgattt |
4233726 |
T |
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| Q |
116 |
t |
116 |
Q |
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| T |
4233725 |
t |
4233725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 137 - 233
Target Start/End: Complemental strand, 4233678 - 4233582
Alignment:
| Q |
137 |
aaattgaaatatgcatatatacctgtcgaggatcttttatttcttggaaatcttgttgatcatcatcgaaatcgggtatactttcatcggacttgat |
233 |
Q |
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| T |
4233678 |
aaattcaaatatgcatatatacctgtcgaggatcttttatttcttcaaaatcttgttcatcatcatcggtatcgggtataatttcaccggacctgat |
4233582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 66
Target Start/End: Complemental strand, 6113585 - 6113532
Alignment:
| Q |
13 |
catcacaaatcttctttgatgcaggtgactgaataagttcttccaaaaccttgt |
66 |
Q |
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| T |
6113585 |
catcacaaatcttctttgatgcaggtaactgaatcatttcttcaaaaacattgt |
6113532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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