View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7763_low_36 (Length: 247)
Name: NF7763_low_36
Description: NF7763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7763_low_36 |
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| [»] scaffold0001 (1 HSPs) |
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Alignment Details
Target: scaffold0001 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 506465 - 506230
Alignment:
| Q |
1 |
attgggtaaagctttctcttaattattacattctcctataaatataatcaagagatagaaatactttgtgttgtgacttacatcttccggtcactataat |
100 |
Q |
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| T |
506465 |
attgggtaaagctttctcttaattattacattctcctataaatataatcaagagatagaaatactttgtgttgtgacttacaccttccggtcactataat |
506366 |
T |
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| Q |
101 |
aagtaaaaatttatatttcagatt-attcaatgtatatagtctttactatagaccacatatgaatctatagtttacatctacaaataatctgatgaaatg |
199 |
Q |
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| T |
506365 |
a------------tatttcagattcattcaatgtatatagtctttactatagaccacagatgaatctatagtttacatctacaaataatctgatgaaatg |
506278 |
T |
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| Q |
200 |
cagtgttgtagagagtattggtgatcaagtaacaaatctaaaagaagg |
247 |
Q |
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| T |
506277 |
cagtgttgtagagagtattggtgatcaagtaacaaatctaaaagaagg |
506230 |
T |
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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 124
Target Start/End: Original strand, 42530487 - 42530532
Alignment:
| Q |
79 |
tacatcttccggtcactataataagtaaaaatttatatttcagatt |
124 |
Q |
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| T |
42530487 |
tacatcatccggtcactattataagtaaaaatttacattttagatt |
42530532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 124
Target Start/End: Original strand, 41346471 - 41346507
Alignment:
| Q |
88 |
cggtcactataataagtaaaaatttatatttcagatt |
124 |
Q |
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| T |
41346471 |
cggtcactattataagtaaaaatttatattttagatt |
41346507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 124
Target Start/End: Original strand, 52215872 - 52215920
Alignment:
| Q |
76 |
acttacatcttccggtcactataataagtaaaaatttatatttcagatt |
124 |
Q |
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||||||||| |||||||||||| ||||| ||||||||| |||| ||||| |
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| T |
52215872 |
acttacatcctccggtcactattataagcaaaaatttacattttagatt |
52215920 |
T |
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