View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7763_low_38 (Length: 241)
Name: NF7763_low_38
Description: NF7763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7763_low_38 |
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Alignment Details
Target: chr8 (Bit Score: 231; Significance: 1e-128; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-128
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 37552223 - 37552453
Alignment:
| Q |
1 |
ttccaattttgaacaaggagaagtatgtgcaaatgcacatgtacatgagtggaacaaaagcaaaagcctaagcaagaaattgaagatatgtgattcagaa |
100 |
Q |
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| T |
37552223 |
ttccaattttgaacaaggagaagtatgtgcaaatgcacatgtacatgagtggaacaaaagcaaaagcctaagcaagaaattgaagatatgtgattcagaa |
37552322 |
T |
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| Q |
101 |
aatggcttgtcttcattagtataatacagtaaacatttcattaaggcaaagagacatcgtgtggtattcaatgagtaatttaatttaattgtaagcactg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37552323 |
aatggcttgtcttcattagtataatacagtaaacatttcattaaggcaaagagacatcgtgtggtattcaatgagtaatttaatttaattgtaagcactg |
37552422 |
T |
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| Q |
201 |
aaagtgcaaaaatgttttacactgatgtcca |
231 |
Q |
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| T |
37552423 |
aaagtgcaaaaatgttttacactgatgtcca |
37552453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 39363338 - 39363433
Alignment:
| Q |
1 |
ttccaattttgaacaaggagaagtatgtgcaaatgcacatgtacatgagtggaacaaaagcaaaagcctaagcaagaaattgaagatatgtgattc |
96 |
Q |
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|||| ||||||||||| ||| ||||||| || |||||||||||||||||||||||||||||||| |||| ||||||||||||| || ||||||| |
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| T |
39363338 |
ttccgattttgaacaaagagtagtatgtacagatgcacatgtacatgagtggaacaaaagcaaatgcctgtacaagaaattgaaggtaagtgattc |
39363433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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