View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7763_low_41 (Length: 234)
Name: NF7763_low_41
Description: NF7763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7763_low_41 |
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Alignment Details
Target: chr4 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 19 - 217
Target Start/End: Original strand, 13317872 - 13318066
Alignment:
| Q |
19 |
actgtatagaatatctgtggtccataatannnnnnnatagacgaggtttccatccatgtatagaggaaccaattaaagaatatatgtttaatgtaacttt |
118 |
Q |
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| T |
13317872 |
actgtattgaatatctgtggtccataatatttttttatagacgaggtttcca----tgtatagaggaaccaattaaagaatatatgtttaatgtaacttt |
13317967 |
T |
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| Q |
119 |
atgcaagttttagaaaaatgattaagactccttggtttctttctcaacttttgtttttgtgtcatctatgacatgtgcacatgatcgattctagatagt |
217 |
Q |
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| T |
13317968 |
atgcaagttttagaaaaatgattaagactccttggtttctttctcaacttttgtttttgtgtcatctatgacatgtgcacatgatcgattctagatagt |
13318066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 163
Target Start/End: Original strand, 13182940 - 13182986
Alignment:
| Q |
117 |
ttatgcaagttttagaaaaatgattaagactccttggtttctttctc |
163 |
Q |
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| T |
13182940 |
ttatgcaagttttaaaaaaattatcaagactctttggtttctttctc |
13182986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 112; Significance: 9e-57; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 71 - 217
Target Start/End: Original strand, 43108167 - 43108313
Alignment:
| Q |
71 |
tccatgtatagaggaaccaattaaagaatatatgtttaatgtaactttatgcaagttttagaaaaatgattaagactccttggtttctttctcaactttt |
170 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||| |
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| T |
43108167 |
tccatgtatagaggaaccaattaaagaatatatgtttaatgtaactttatgcaagttttagaaaaatgattaagactctttggtttctctctc-tctttt |
43108265 |
T |
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| Q |
171 |
gtttttgtgtcatcta-tgacatgtgcacatgatcgattctagatagt |
217 |
Q |
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| T |
43108266 |
gtttttgtgtcacctactgacatgtgcacatgatcgattctagctagt |
43108313 |
T |
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