View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7763_low_7 (Length: 438)
Name: NF7763_low_7
Description: NF7763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7763_low_7 |
 | |
|
| [»] scaffold0536 (4 HSPs) |
| | |
|
Alignment Details
Target: scaffold0536 (Bit Score: 73; Significance: 3e-33; HSPs: 4)
Name: scaffold0536
Description:
Target: scaffold0536; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 151 - 223
Target Start/End: Original strand, 9480 - 9552
Alignment:
| Q |
151 |
tttctcattcaattaaatgtgcaccagtcgtagatgagggcatgttggacattaaaagcaatataaagcagaa |
223 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9480 |
tttctcattcaattaaatgtgcaccagtcgtagatgagggcatgttggacattaaaagcaatataaagcagaa |
9552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 51 - 120
Target Start/End: Original strand, 9399 - 9468
Alignment:
| Q |
51 |
ctgatagcaccacaagcagctgctaaacaacacccaacacaacttaaacaaaaccatattaggtgagtgt |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
9399 |
ctgatagcaccacaagcagctgctaaacaacacccaacacaacttatacaaaaccatattaggtgagtgt |
9468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 362 - 429
Target Start/End: Original strand, 9553 - 9620
Alignment:
| Q |
362 |
gagaagagaaagcaattaaaatctacttcataccttacttatcacctggtcatatgatccctctatgc |
429 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9553 |
gagaagagaaagcacttaaaatctacttcataccttacttatcacctggtcatatgatccctctatgc |
9620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 346 - 428
Target Start/End: Original strand, 5537 - 5619
Alignment:
| Q |
346 |
atggatatggaaaaaggagaagagaaagcaattaaaatctacttcataccttacttatcacctggtcatatgatccctctatg |
428 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||| | |||||||||||||||||| |||| |
|
|
| T |
5537 |
atggatatggaagaaggagaagagaaagcacttactatctacttcataccttacttagctcctggtcatatgatccctttatg |
5619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 354 - 429
Target Start/End: Original strand, 48911379 - 48911454
Alignment:
| Q |
354 |
ggaaaaaggagaagagaaagcaattaaaatctacttcataccttacttatcacctggtcatatgatccctctatgc |
429 |
Q |
| |
|
|||| ||||||||||||||||| ||| ||||||||||||||||||||| ||||||| || ||||||||||||||| |
|
|
| T |
48911379 |
ggaagaaggagaagagaaagcacttaccatctacttcataccttacttagcacctggccacatgatccctctatgc |
48911454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University