View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7764_high_1 (Length: 391)
Name: NF7764_high_1
Description: NF7764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7764_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 372
Target Start/End: Complemental strand, 343283 - 342925
Alignment:
| Q |
1 |
ttcaaatttaaagatgatatatgtatgcaagagcgcggtgttctatcccctagtggaaaggttgtgcaaatataaaataatcaatcaaattcttttctca |
100 |
Q |
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| T |
343283 |
ttcaaatttaaagatgatatatgtatgcaagagcgcggtgttctatcccctagtggaaaggttgtgcaaatatacaataatcaatcaagttcttttctca |
343184 |
T |
|
| Q |
101 |
agaagttgaacacactaaaggctaaaatgatatagacatttttgttaatgatgaacttgaagcaatattggggaagaaatgattgacatcaccattgatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
343183 |
agaagttgaacacactaaaggctaaaatgatatagatatttttgttaatgatgaacttgaagcaatattggggaaga---------catcaccattgatg |
343093 |
T |
|
| Q |
201 |
caacaaaagttcctaattaatgatgaaatagtacttttcgtggatcaagttgaccactacaataacttgaaggaactgcagatatttcttgtcttccttt |
300 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
343092 |
caacaaaagttcctaat----gatgaaatagtacttttcgtggatcaagttgaccactacaataacttgaaggaactgcagatatttcttgtcttccttt |
342997 |
T |
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| Q |
301 |
ccactcttcaccaggtttgagagtaattgctttttctacacaagcaggttggacacacaacatatgtttgta |
372 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
342996 |
ccactcttcaccaggtttgagagtaattgctttttctacacaagcaggttggacacacaacatatgtttgta |
342925 |
T |
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