View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7764_high_5 (Length: 248)

Name: NF7764_high_5
Description: NF7764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7764_high_5
NF7764_high_5
[»] chr7 (7 HSPs)
chr7 (6-237)||(4008427-4008658)
chr7 (6-237)||(4013819-4014050)
chr7 (184-235)||(6028592-6028643)
chr7 (88-227)||(15902797-15902936)
chr7 (88-194)||(24339650-24339756)
chr7 (88-136)||(5409787-5409835)
chr7 (115-227)||(26329354-26329466)
[»] scaffold0376 (1 HSPs)
scaffold0376 (110-194)||(6320-6404)
[»] chr5 (2 HSPs)
chr5 (88-194)||(32766888-32766994)
chr5 (89-216)||(30098312-30098439)
[»] chr1 (5 HSPs)
chr1 (95-195)||(6612123-6612223)
chr1 (88-194)||(9828052-9828158)
chr1 (76-136)||(1486648-1486708)
chr1 (113-194)||(9629870-9629951)
chr1 (177-233)||(37055890-37055946)
[»] chr8 (4 HSPs)
chr8 (118-210)||(4122224-4122316)
chr8 (88-136)||(22197687-22197735)
chr8 (92-144)||(12570458-12570510)
chr8 (92-144)||(12570684-12570736)
[»] chr3 (2 HSPs)
chr3 (95-194)||(8039787-8039886)
chr3 (76-194)||(17005552-17005670)
[»] chr6 (3 HSPs)
chr6 (76-194)||(10294115-10294233)
chr6 (76-222)||(25038004-25038150)
chr6 (147-195)||(32320673-32320721)
[»] chr2 (1 HSPs)
chr2 (76-194)||(18420367-18420485)
[»] chr4 (3 HSPs)
chr4 (164-237)||(20521870-20521943)
chr4 (88-136)||(3947717-3947765)
chr4 (88-136)||(23292942-23292990)
[»] scaffold0053 (1 HSPs)
scaffold0053 (88-136)||(8853-8901)
[»] scaffold0044 (1 HSPs)
scaffold0044 (113-193)||(53189-53269)


Alignment Details
Target: chr7 (Bit Score: 176; Significance: 6e-95; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 6 - 237
Target Start/End: Original strand, 4008427 - 4008658
Alignment:
Q  6 aatatgaaagacaactccgtcttgtacgttgtcaaactgctgcacaacaagctcaataaactgccacacagaagcacatactctcctcagattaggcgta 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||    
T  4008427 aatatgaaagacaactccgtcttgtacgttgtcaaactgctgcacaacaagctcaataatctgccacacagaagcacatactctcctcagattaggtgta 4008526  T
Q  106 tcctggcgtcggacacgtgtcatgtccgacatcgatacaataccgacacatacaatgacattgaatcatgcaattttatcaaattattaaagatatcgac 205  Q
    ||||||||||||||||||| | |||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| | ||  |    
T  4008527 tcctggcgtcggacacgtgccgtgtcggacatcgatacaataccgacacatacaattacattgaatcatgtaattttatcaaattattaaaggtgtctgc 4008626  T
Q  206 gtatcagtgtctgtgtcatgtctgatgtccat 237  Q
    || ||||| |||||||||| ||||||||||||    
T  4008627 gtgtcagtttctgtgtcatatctgatgtccat 4008658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 6 - 237
Target Start/End: Original strand, 4013819 - 4014050
Alignment:
Q  6 aatatgaaagacaactccgtcttgtacgttgtcaaactgctgcacaacaagctcaataaactgccacacagaagcacatactctcctcagattaggcgta 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||    
T  4013819 aatatgaaagacaactccgtcttgtacgttgtcaaactgctgcacaacaagctcaataatctgccacacagaagcacatactctcctcagattaggtgta 4013918  T
Q  106 tcctggcgtcggacacgtgtcatgtccgacatcgatacaataccgacacatacaatgacattgaatcatgcaattttatcaaattattaaagatatcgac 205  Q
    ||||||||||||||||||| | |||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| | ||  |    
T  4013919 tcctggcgtcggacacgtgccgtgtcggacatcgatacaataccgacacatacaattacattgaatcatgtaattttatcaaattattaaaggtgtctgc 4014018  T
Q  206 gtatcagtgtctgtgtcatgtctgatgtccat 237  Q
    || ||||| |||||||||| ||||||||||||    
T  4014019 gtgtcagtttctgtgtcatatctgatgtccat 4014050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 235
Target Start/End: Complemental strand, 6028643 - 6028592
Alignment:
Q  184 tcaaattattaaagatatcgacgtatcagtgtctgtgtcatgtctgatgtcc 235  Q
    ||||||||||||  ||||||| || |||||||||||||| ||||||||||||    
T  6028643 tcaaattattaaccatatcgatgtgtcagtgtctgtgtcgtgtctgatgtcc 6028592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 227
Target Start/End: Complemental strand, 15902936 - 15902797
Alignment:
Q  88 ctcctcagattaggcgtatcctggcgtcggacacgtgtcatgtccgacatcgatacaataccgacacatacaatgacattgaatcatgcaattttatcaa 187  Q
    ||||||| |||| |||| ||||||  |||| || ||||| ||||||| | ||| |||| ||||||||||| ||| ||| | ||| |||  ||||||||||    
T  15902936 ctcctcaaattaagcgtgtcctggtctcgggcatgtgtcgtgtccgataccgacacaacaccgacacatataattacactaaattatgtgattttatcaa 15902837  T
Q  188 attattaaagatatcgacgtatcagtgtctgtgtcatgtc 227  Q
    |||||||  | | ||| | | |||||||||||||| ||||    
T  15902836 attattattggtgtcggcatgtcagtgtctgtgtcgtgtc 15902797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 194
Target Start/End: Complemental strand, 24339756 - 24339650
Alignment:
Q  88 ctcctcagattaggcgtatcctggcgtcggacacgtgtcatgtccgacatcgatacaataccgacacatacaatgacattgaatcatgcaattttatcaa 187  Q
    |||||| |||||||||| ||| || |||||| ||||||| ||||||||| ||| || | |||||||| |  ||| ||| ||||| |||  ||||| ||||    
T  24339756 ctcctcggattaggcgtgtcccggtgtcggatacgtgtcgtgtccgacaccgacacgacaccgacacttgtaattacactgaattatgtgattttttcaa 24339657  T
Q  188 attatta 194  Q
    |||||||    
T  24339656 attatta 24339650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 136
Target Start/End: Original strand, 5409787 - 5409835
Alignment:
Q  88 ctcctcagattaggcgtatcctggcgtcggacacgtgtcatgtccgaca 136  Q
    |||||| |||||||||| ||| || |||||||||||||| |||||||||    
T  5409787 ctcctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtccgaca 5409835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 227
Target Start/End: Original strand, 26329354 - 26329466
Alignment:
Q  115 cggacacgtgtcatgtccgacatcgatacaataccgacacatacaatgacattgaatcatgcaattttatcaaattattaaagatatcgacgtatcagtg 214  Q
    |||||||||||| |||| |||| ||| || |  |||||||||| ||| ||| |||||  ||   |||| |||||||||||| ||| ||| ||| ||||||    
T  26329354 cggacacgtgtcgtgtctgacaccgacacgacgccgacacatataattacactgaattgtgtgtttttctcaaattattaacgatgtcggcgtgtcagtg 26329453  T
Q  215 tctgtgtcatgtc 227  Q
    |||||||| ||||    
T  26329454 tctgtgtcgtgtc 26329466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0376 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0376
Description:

Target: scaffold0376; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 110 - 194
Target Start/End: Complemental strand, 6404 - 6320
Alignment:
Q  110 ggcgtcggacacgtgtcatgtccgacatcgatacaataccgacacatacaatgacattgaatcatgcaattttatcaaattatta 194  Q
    |||||||||| |||||| || || ||| |||||| | ||||||||||| ||| ||||||||| |||||||||| |||||||||||    
T  6404 ggcgtcggacccgtgtcgtgccccacaccgatacgacaccgacacatataattacattgaattatgcaattttgtcaaattatta 6320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 88 - 194
Target Start/End: Original strand, 32766888 - 32766994
Alignment:
Q  88 ctcctcagattaggcgtatcctggcgtcggacacgtgtcatgtccgacatcgatacaataccgacacatacaatgacattgaatcatgcaattttatcaa 187  Q
    ||||||||||||| |||||||||| |||||||||||||| | | ||||| ||| || | ||  ||||||| ||| |||||||||  ||| ||||| ||||    
T  32766888 ctcctcagattagacgtatcctggtgtcggacacgtgtcgttttcgacaccgacacgacacaaacacatataattacattgaattgtgcgattttctcaa 32766987  T
Q  188 attatta 194  Q
    |||||||    
T  32766988 attatta 32766994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 216
Target Start/End: Complemental strand, 30098439 - 30098312
Alignment:
Q  89 tcctcagattaggcgtatcctggcgtcggacacgtgtcatgtccgacatcgatacaataccgacacatacaatgacattgaatcatgcaattttatcaaa 188  Q
    ||||| ||||||| || |||||| ||| |||||||||| |||||||||  ||  | |||||||||  || ||| ||||||||| |||  ||||| |||||    
T  30098439 tcctcggattaggtgtgtcctggtgtctgacacgtgtcgtgtccgacactgactcgataccgacatctataattacattgaattatgtgattttctcaaa 30098340  T
Q  189 ttattaaagatatcgacgtatcagtgtc 216  Q
    ||||||| | | ||| ||| ||||||||    
T  30098339 ttattaacggtttcgtcgtgtcagtgtc 30098312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 95 - 195
Target Start/End: Original strand, 6612123 - 6612223
Alignment:
Q  95 gattaggcgtatcctggcgtcggacacgtgtcatgtccgacatcgatacaataccgacacatacaatgacattgaatcatgcaattttatcaaattatta 194  Q
    |||||||||| |||||| ||||||||| | || ||||||||||||| || | |||||||| |  ||| ||| ||||| ||| |||||| |||||||||||    
T  6612123 gattaggcgtgtcctggtgtcggacacatatcgtgtccgacatcgacacgacaccgacacttgtaattacactgaattatgtaattttttcaaattatta 6612222  T
Q  195 a 195  Q
    |    
T  6612223 a 6612223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 88 - 194
Target Start/End: Complemental strand, 9828158 - 9828052
Alignment:
Q  88 ctcctcagattaggcgtatcctggcgtcggacacgtgtcatgtccgacatcgatacaataccgacacatacaatgacattgaatcatgcaattttatcaa 187  Q
    |||||| |||||| ||| ||| || |||||||||||||| |||| ||||  || || | ||||||||||| ||| ||| ||||| |||  ||||||||||    
T  9828158 ctcctcggattagacgtgtcccggtgtcggacacgtgtcgtgtctgacacggacacgacaccgacacataaaattacactgaattatgtgattttatcaa 9828059  T
Q  188 attatta 194  Q
    |||||||    
T  9828058 attatta 9828052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 136
Target Start/End: Original strand, 1486648 - 1486708
Alignment:
Q  76 gaagcacatactctcctcagattaggcgtatcctggcgtcggacacgtgtcatgtccgaca 136  Q
    |||||||| || |||||| |||||||||| ||| || |||||||||||||| |||||||||    
T  1486648 gaagcacagacactcctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtccgaca 1486708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 194
Target Start/End: Original strand, 9629870 - 9629951
Alignment:
Q  113 gtcggacacgtgtcatgtccgacatcgatacaataccgacacatacaatgacattgaatcatgcaattttatcaaattatta 194  Q
    |||||||| ||||| ||||||||||||| || | |||||||| || ||| ||| ||||| ||   |||||||||||||||||    
T  9629870 gtcggacatgtgtcgtgtccgacatcgacacgacaccgacacttataatcacactgaattatatgattttatcaaattatta 9629951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 233
Target Start/End: Original strand, 37055890 - 37055946
Alignment:
Q  177 aattttatcaaattattaaagatatcgacgtatcagtgtctgtgtcatgtctgatgt 233  Q
    |||||| |||||||||||    |||||| |||||||||||||||||||||| |||||    
T  37055890 aattttctcaaattattagcagtatcgatgtatcagtgtctgtgtcatgtccgatgt 37055946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 210
Target Start/End: Original strand, 4122224 - 4122316
Alignment:
Q  118 acacgtgtcatgtccgacatcgatacaataccgacacatacaatgacattgaatcatgcaattttatcaaattattaaagatatcgacgtatc 210  Q
    ||||||||| |||  ||||| || |||| ||||||||||| ||| ||| ||||| ||  ||||||||| ||||||||| ||| ||||||||||    
T  4122224 acacgtgtcgtgtttgacattgacacaacaccgacacatataattacaatgaattatataattttatctaattattaatgatgtcgacgtatc 4122316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 136
Target Start/End: Original strand, 22197687 - 22197735
Alignment:
Q  88 ctcctcagattaggcgt-atcctggcgtcggacacgtgtcatgtccgaca 136  Q
    ||||||||||||||||| |||| || ||||||||||||||||||||||||    
T  22197687 ctcctcagattaggcgtgatcc-ggtgtcggacacgtgtcatgtccgaca 22197735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 144
Target Start/End: Original strand, 12570458 - 12570510
Alignment:
Q  92 tcagattaggcgtatcctggcgtcggacacgtgtcatgtccgacatcgataca 144  Q
    ||||||||||||| |||||| |||||||||||||  |||| |||| |||||||    
T  12570458 tcagattaggcgtgtcctggtgtcggacacgtgtagtgtctgacaccgataca 12570510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 144
Target Start/End: Original strand, 12570684 - 12570736
Alignment:
Q  92 tcagattaggcgtatcctggcgtcggacacgtgtcatgtccgacatcgataca 144  Q
    ||||||||||||| |||||| |||||||||||||  |||| |||| |||||||    
T  12570684 tcagattaggcgtgtcctggtgtcggacacgtgtagtgtctgacaccgataca 12570736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 95 - 194
Target Start/End: Original strand, 8039787 - 8039886
Alignment:
Q  95 gattaggcgtatcctggcgtcggacacgtgtcatgtccgacatcgatacaataccgacacatacaatgacattgaatcatgcaattttatcaaattatta 194  Q
    ||||| |||| ||| || |||||||| || |||||||||||| ||| || | ||||||||||| ||| ||| ||||| ||  |||||| |||||||||||    
T  8039787 gattaagcgtgtcccggtgtcggacatgtctcatgtccgacaccgacacgacaccgacacatataattacactgaattatataattttctcaaattatta 8039886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 194
Target Start/End: Original strand, 17005552 - 17005670
Alignment:
Q  76 gaagcacatactctcctcagattaggcgtatcctggcgtcggacacgtgtcatgtccgacatcgatacaataccgacacatacaatgacattgaatcatg 175  Q
    |||||||| || |||||| ||||||  || |||||| ||| ||||||||| ||||| |||| | | |||| |||||||| || ||| ||| ||||| ||     
T  17005552 gaagcacaaacactcctcggattagaggtgtcctggtgtcagacacgtgttatgtctgacaccaacacaacaccgacacttataattacactgaattata 17005651  T
Q  176 caattttatcaaattatta 194  Q
      |||||||||||||||||    
T  17005652 tgattttatcaaattatta 17005670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 194
Target Start/End: Complemental strand, 10294233 - 10294115
Alignment:
Q  76 gaagcacatactctcctcagattaggcgtatcctggcgtcggacacgtgtcatgtccgacatcgatacaataccgacacatacaatgacattgaatcatg 175  Q
    |||||||| || |||||||||||||  || |||| |  |||||||| |||| ||||||||| | | || | ||||||||||| ||| ||||||||  |||    
T  10294233 gaagcacagacactcctcagattagctgtgtcctagtttcggacacatgtcgtgtccgacaccaacacgacaccgacacatataattacattgaaatatg 10294134  T
Q  176 caattttatcaaattatta 194  Q
    | ||| | |||||||||||    
T  10294133 cgattatctcaaattatta 10294115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 222
Target Start/End: Original strand, 25038004 - 25038150
Alignment:
Q  76 gaagcacatactctcctcagattaggcgtatcctggcgtcggacacgtgtcatgtccgacatcgatacaataccgacacatacaatgacattgaatcatg 175  Q
    ||||||||||| || ||||| | | |||| | |||| |||||||||||||| |||| |||| | | ||||||||||||  |  ||| ||| | ||| |||    
T  25038004 gaagcacatacacttctcaggtcatgcgtgttctggtgtcggacacgtgtcgtgtcggacaccaacacaataccgacatttgtaattacactaaattatg 25038103  T
Q  176 caattttatcaaattattaaagatatcgacgtatcagtgtctgtgtc 222  Q
     |||||| |||||||||||| | | || |||| ||||| ||||||||    
T  25038104 taattttctcaaattattaacggtgtcaacgtgtcagtatctgtgtc 25038150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 195
Target Start/End: Original strand, 32320673 - 32320721
Alignment:
Q  147 accgacacatacaatgacattgaatcatgcaattttatcaaattattaa 195  Q
    ||||| ||||| ||||||||||||| |||  ||||||||||||||||||    
T  32320673 accgatacatataatgacattgaattatgtgattttatcaaattattaa 32320721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 194
Target Start/End: Original strand, 18420367 - 18420485
Alignment:
Q  76 gaagcacatactctcctcagattaggcgtatcctggcgtcggacacgtgtcatgtccgacatcgatacaataccgacacatacaatgacattgaatcatg 175  Q
    |||||||| || || ||| |||||||||| || |   |||| |||| ||||||||||||||| || |||| |||||||| || |||  |||||||| |||    
T  18420367 gaagcacagacacttctcggattaggcgtgtcataatgtcgaacacttgtcatgtccgacatggacacaacaccgacacttataattgcattgaattatg 18420466  T
Q  176 caattttatcaaattatta 194  Q
      ||||| |||||||||||    
T  18420467 tgattttctcaaattatta 18420485  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 237
Target Start/End: Original strand, 20521870 - 20521943
Alignment:
Q  164 cattgaatcatgcaattttatcaaattattaaagatatcgacgtatcagtgtctgtgtcatgtctgatgtccat 237  Q
    |||||||| |||  |||||||||||||||||  | ||||| ||| |||||||| ||||| |||||| |||||||    
T  20521870 cattgaattatgtgattttatcaaattattatcggtatcggcgtgtcagtgtccgtgtcgtgtctggtgtccat 20521943  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 136
Target Start/End: Original strand, 3947717 - 3947765
Alignment:
Q  88 ctcctcagattaggcgtatcctggcgtcggacacgtgtcatgtccgaca 136  Q
    |||||| ||||||| || |||||| |||||||||||||| |||||||||    
T  3947717 ctcctcggattaggtgtgtcctggtgtcggacacgtgtcgtgtccgaca 3947765  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 136
Target Start/End: Original strand, 23292942 - 23292990
Alignment:
Q  88 ctcctcagattaggcgtatcctggcgtcggacacgtgtcatgtccgaca 136  Q
    |||||| |||||||||| ||| || |||||||||||||| |||||||||    
T  23292942 ctcctcggattaggcgtgtcccggtgtcggacacgtgtcgtgtccgaca 23292990  T

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Target: scaffold0053 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 136
Target Start/End: Complemental strand, 8901 - 8853
Alignment:
Q  88 ctcctcagattaggcgtatcctggcgtcggacacgtgtcatgtccgaca 136  Q
    ||||||||||||||||| ||  || |||||||||||||| |||||||||    
T  8901 ctcctcagattaggcgtgtctcggtgtcggacacgtgtcgtgtccgaca 8853  T

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Target: scaffold0044 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 193
Target Start/End: Complemental strand, 53269 - 53189
Alignment:
Q  113 gtcggacacgtgtcatgtccgacatcgatacaataccgacacatacaatgacattgaatcatgcaattttatcaaattatt 193  Q
    |||||||||||||||||||||||| ||| ||   |||||||| || ||| ||| ||||| |||  ||||| ||||||||||    
T  53269 gtcggacacgtgtcatgtccgacaccgacacggcaccgacacttataattacactgaattatgtgattttctcaaattatt 53189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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