View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7764_low_1 (Length: 535)
Name: NF7764_low_1
Description: NF7764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7764_low_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 399
Target Start/End: Complemental strand, 7476411 - 7476013
Alignment:
| Q |
1 |
aagaaaacaattcccaaattgtgatttcgcaatccagggttcgtggaagttgctgaaatctagatatcgatttggaatttgagtcacatgtgcttggctt |
100 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
7476411 |
aagaaaacaatacccaaattgtgatttcgcaatcccgggttcgtggaagttgcagaaatctagatatcgatctggagtttgagtcacatgtgcttggctt |
7476312 |
T |
|
| Q |
101 |
caatgaagtatgtatcaannnnnnnagttgttattcatgttttgatccattctgtgcatatcaatcctatcttgcgttagttcgtgtcaagtttttagtc |
200 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7476311 |
caatgaagtatgtatcaatttgtttagttgttattcatgtttcgatccattctgtgcatatcaatcctatcttgcgttagttcgtgtcaagtttttagtc |
7476212 |
T |
|
| Q |
201 |
ctttatctcacaaatttgtctttctattcttctgtttgttgatttcaagtatagggnnnnnnnagttcgtttcatttaatctggattttactgttagggt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7476211 |
ctttatctcacaaatttgtctttctattcttctgtttgttgatttcaagtatagcctttttttagttcgtttcatttaatctggattttactgttagggt |
7476112 |
T |
|
| Q |
301 |
gtttgtttgtgaatagtttttcactttgtgtgtttattctatttcgagcccttactgtcagtggtggggtgtgttaaagtatattgggtaatgtttaaa |
399 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
7476111 |
gtttgtttgtgaatagttttatactttgtgtgtttattctatttcgagcccttactgtcagtggtggggtgtgttaaagtatattgggtactgtttaaa |
7476013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 390 - 519
Target Start/End: Complemental strand, 7475024 - 7474895
Alignment:
| Q |
390 |
aatgtttaaaatgagtagttggaatttatttgcatgtattcttttttggaatgttgtgcctttatttgatttattttattgaaagtttattgaactagtg |
489 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7475024 |
aatgtttaaaatgagtagttggaatttatttgcatgtattctattttggtatgttgtgcctttatttgatttattttattgaaagtttattgaactagtg |
7474925 |
T |
|
| Q |
490 |
ttgggattttgttgttttacagtaaccatg |
519 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
7474924 |
ttgggattttgttgttttacagtaaccatg |
7474895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University