View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7764_low_3 (Length: 355)
Name: NF7764_low_3
Description: NF7764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7764_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 336
Target Start/End: Complemental strand, 39299223 - 39298888
Alignment:
| Q |
1 |
gaatgaaaagggcctttgttacaacctcataattttctcccttatgtctactttctctattttaagcctagataagaaataccataaattatgtggacca |
100 |
Q |
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| T |
39299223 |
gaatgaaaagggcctttgttacaacctcataattttctcccttatgtctactttctctattttaagcctagataagaaatgccataaattatgtggacca |
39299124 |
T |
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| Q |
101 |
tgaaatccaaacttagaaagtattgcatataagtggattttaattatagggcaacaaattttgcacatttgaatttgtcagatacattttaaatcctttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39299123 |
tgaaatccaaacttagaaagtattgcatataagtggattttaattatagggcaacaaattttgcacatttgaatttgtcagatacattttaaatcctttc |
39299024 |
T |
|
| Q |
201 |
atttttgcatttggatagttcactacatgttataattttcccattggttaggatttacaaccaataaatgaggagtatagattttcgattaatggaggtt |
300 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
39299023 |
atttttgcatttggatagttcactacatcttataattttcccattggttaggatttacaaccaataaatgaggagtacagattttcgattaatggaggtt |
39298924 |
T |
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| Q |
301 |
aaatctttatacaaaaaattgttacaaacataatga |
336 |
Q |
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| T |
39298923 |
aaatctttatacaaaaaattgttacaaacataatga |
39298888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 177; Significance: 2e-95; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 26878894 - 26878699
Alignment:
| Q |
1 |
gaatgaaaagggcctttgttacaacctcataattttctcccttatgtctactttctctattttaagcctagataagaaataccataaattatgtggacca |
100 |
Q |
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| T |
26878894 |
gaatgaaaagggcctttgttacaacctcataattttctcccttatgtctactttctctattttaagcctagataagaaataccataaatgatgtggacca |
26878795 |
T |
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| Q |
101 |
tgaaatccaaacttagaaagta--ttgcatataagtggattttaattatagggcaacaaattttgcacatttgaatttgtcagatacattttaaat |
194 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
26878794 |
tgaaatccaaacttagaaagtattttgcatataagtggattttaattatagggcaacaaattttgcacatttgaatttgtcagatacatttcaaat |
26878699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 30 - 194
Target Start/End: Complemental strand, 26898090 - 26897930
Alignment:
| Q |
30 |
taattttctcccttatgtctactttctctattttaagcctagataagaaataccataaattatgtggaccatgaaatccaaacttagaaagtattgcata |
129 |
Q |
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| T |
26898090 |
taattttctccctcaggtctactttctccattttaagcctagataagaaataccataaattatgtggaccat--aatccatacttagaaagtattg-ata |
26897994 |
T |
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| Q |
130 |
taagtggattttaattatagggcaacaaattttgcacatttgaatttgtcagatacattttaaat |
194 |
Q |
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| T |
26897993 |
tcagtggattttaattttagggcaacaaatgttgc-catttgaatttgtcagatacatttcaaat |
26897930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 189 - 336
Target Start/End: Complemental strand, 26878595 - 26878447
Alignment:
| Q |
189 |
ttaaatcctttcatttttgcatttggatagttcactacatgttataattttcccattggttaggatttacaaccaataaatgaggagtatagattttcga |
288 |
Q |
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||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||| | |
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| T |
26878595 |
ttaaatcatttcatatttgcatttggatagttcactatatgttataattttcccattggttaggatttacaaccaatgaatgaagggtatagatttttta |
26878496 |
T |
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| Q |
289 |
ttaatggaggttaaatctttata-caaaaaattgttacaaacataatga |
336 |
Q |
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| T |
26878495 |
ttaatggaggttaaatatttataccaaaaatttgctacaaacacaatga |
26878447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 189 - 312
Target Start/End: Complemental strand, 26897822 - 26897695
Alignment:
| Q |
189 |
ttaaatcctttcatttttgcatttggat----agttcactacatgttataattttcccattggttaggatttacaaccaataaatgaggagtatagattt |
284 |
Q |
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||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||| |
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| T |
26897822 |
ttaaatcatttcatatttgcatttggatggatagttcactacatgttataattttcccattggttaggatttacaaccaatcaatgaagggtatagattt |
26897723 |
T |
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| Q |
285 |
tcgattaatggaggttaaatctttatac |
312 |
Q |
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| T |
26897722 |
tttattaatggagattaaatctttatac |
26897695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 251 - 307
Target Start/End: Complemental strand, 26898904 - 26898848
Alignment:
| Q |
251 |
ggatttacaaccaataaatgaggagtatagattttcgattaatggaggttaaatctt |
307 |
Q |
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||||||||||||||| ||||| | ||||||||||| |||||||||||||||||||| |
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| T |
26898904 |
ggatttacaaccaatgaatgaagggtatagattttttattaatggaggttaaatctt |
26898848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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