View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7764_low_8 (Length: 275)
Name: NF7764_low_8
Description: NF7764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7764_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 8 - 261
Target Start/End: Original strand, 23553207 - 23553458
Alignment:
| Q |
8 |
ccaatagagtattatcctactttttcccatcctcatcttccaaatagttgagtttctatgtagttttaatctttttgaaccctaaaaacccttgtttatt |
107 |
Q |
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| T |
23553207 |
ccaatagagttttatcctactttttccgatcctcatcttccaaatagttgagtttctatgtagttttaatctttttgaaccctaaaaacccttgtttatt |
23553306 |
T |
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| Q |
108 |
atcatcttataatggctacattatttgtgcatagattttaatgatatatttggtattttgttgatagttttaacaatttctcttgattatcctacaatga |
207 |
Q |
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| T |
23553307 |
atcatcttataatggctacattatttgtacatagatttt-atgatatatttggtattttgttcatagttttaaaaatttcttttgatta-cctacaatga |
23553404 |
T |
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| Q |
208 |
atattgcgtagttagaaaaaacgtaatgttattatacctctttgttattctata |
261 |
Q |
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| T |
23553405 |
atattgcgtagttagaaaaaacgtaatgttattttacctctttgttattctata |
23553458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 51 - 221
Target Start/End: Original strand, 23305634 - 23305810
Alignment:
| Q |
51 |
atagttgagtttctatgtagttttaatctttttgaaccctaaaaacccttgtttattatcatcttataatggctacattatttgtgcatagattttaatg |
150 |
Q |
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| T |
23305634 |
atagttgagtttctatgtagttttagtctttttgaactctcaaaccccttgtttatcatgatcttataatgactacattattagtgcatagattttaat- |
23305732 |
T |
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| Q |
151 |
atatat-------ttggtattttgttgatagttttaacaatttctcttgattatcctacaatgaatattgcgtagtta |
221 |
Q |
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| T |
23305733 |
atatgtttgctggttggtattttgttgatagttataacaatttatcttgattcacctacaatgaattttgcgtagtta |
23305810 |
T |
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