View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7765_high_11 (Length: 450)
Name: NF7765_high_11
Description: NF7765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7765_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 1 - 435
Target Start/End: Complemental strand, 12043989 - 12043554
Alignment:
| Q |
1 |
aacatatcaatcccaaacgtgtgacagtagcattgctcatattaaaatgaatgattgagattttgaatttatcattagctaaacttggagtgtgaaccat |
100 |
Q |
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| T |
12043989 |
aacatatcaatcccaaacgtgtgacagtagcattgctcatataaaaatgaatgattgagattttgaatttattattagctaaacttggagtgtgaaccat |
12043890 |
T |
|
| Q |
101 |
tcgatctctagagtgaatctggtcctactatttctagtgttttttgttttgtttgatatatatcatttcatttcttctaattattgatcgacatgtaact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12043889 |
tcgatctctagagtgaatctggtcctactatttctagtgttttttgttttgtttgatatatatcatttcatttcttctaattattgatcgacatgtaact |
12043790 |
T |
|
| Q |
201 |
ctgttttttcgataattgatcaccatgcaactctgtcctaagtccccaatagatatcacatcaaaggtactcataatttacaagaatagttgcaagcaaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12043789 |
ctgttttttcgataattgatcaccatgcaactctgtcctaagtccctaatagatatcacatcaaaggtactcataatttacaagaatagttgcaagcaaa |
12043690 |
T |
|
| Q |
301 |
ctttgtttcatagtcattacatatagtacagatgttacttttatt-ttttgcatgtgtgaggccctacatttacctaaaagccaacttgatctcatggtt |
399 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12043689 |
ctttgttccatagtcattacatatagtacagatgttacttttatttttttgcatgtgtgaggccctacatttacctaaaagccaacttgatctcatggtt |
12043590 |
T |
|
| Q |
400 |
cttgtggtacgaaatttttacattcatcactcaaat |
435 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
12043589 |
cttgtggtacgaaatttttacattcatcactcaaat |
12043554 |
T |
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