View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7765_high_14 (Length: 416)
Name: NF7765_high_14
Description: NF7765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7765_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 13 - 399
Target Start/End: Complemental strand, 19319758 - 19319371
Alignment:
| Q |
13 |
agaggttacgacacatttgtctacaaattaaaagtattgtatgctgttttcttataacactttatatcaaaactaatacatataaaatgcgaaaattata |
112 |
Q |
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| T |
19319758 |
agaggttacgacacatttgtcgacaaattaaaagtattgtatgctatttttttataacactttatatcaaa-ctaatacatataaaatgtgaaaattata |
19319660 |
T |
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| Q |
113 |
tgagtcgagcaaatctcgtgttatctttctcaaggaaataaagaaaattaattatttatggacatgttgataaatgccaaaatgacattatttatgtctt |
212 |
Q |
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| T |
19319659 |
tgagtcgagcaaatctcgtgttatctttctcaaggaaataaagaaaattaattatttatggacatgttgataaatgccaaaatgacattatttatgtctt |
19319560 |
T |
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| Q |
213 |
ttagggaacataaaaatttattttgcaagaaacattatgaaaaatcctcatttcatgtaaatactaacgtgaagaaattgcaacgatgaagattact--- |
309 |
Q |
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|||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |
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| T |
19319559 |
ttagggaacataaaaatttattctccaagaaacattatgaaaaatcctcatttcatgtaaatactaacgtcaagaaattgcaacgatgaagattgcttag |
19319460 |
T |
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| Q |
310 |
tcagtcaattcgcttaaccatgaagaaatccaaaaggtataacttagtcactaaggaagctgctaagaataacgtaagataacatgtgat |
399 |
Q |
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| T |
19319459 |
tcagtcaatttacttaaccatgaagaaatccaaaaggta-aacttagtcaccaaggaagttgctaagaataacgtaagataacatgtgat |
19319371 |
T |
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