View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7765_high_28 (Length: 250)
Name: NF7765_high_28
Description: NF7765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7765_high_28 |
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Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 33135519 - 33135281
Alignment:
| Q |
1 |
acaagggttagttttgtcaattgcaatttgtgattaagattgattaattatatggtaaggaagatggtgaagatgaatatgagaggtatccaaaattgtg |
100 |
Q |
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| T |
33135519 |
acaagggttagttttgtcaattgcaatttgtgattaagattgattaattatatggtaaggaagatggtgaagatgaatatgagaggtatccaaaattgtg |
33135420 |
T |
|
| Q |
101 |
gtgaggtagctcctgctctcatcagaatccctaaaaaatgttcttctaaatttccaaggttggagcctatcattgaagaaggacctgagagcttccaaat |
200 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33135419 |
gtgaggtagctcctgctctcatcagaacccctaaaaaatgttcttctaaatttccaaggttggagcctatcattgaagaaggacctgagagcttccaaat |
33135320 |
T |
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| Q |
201 |
tatgccaaagaggatgttgtttcttgttcccactttcat |
239 |
Q |
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| T |
33135319 |
tatgccaaagaggatgttatttcttgttcccactttcat |
33135281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 42 - 239
Target Start/End: Complemental strand, 39182455 - 39182259
Alignment:
| Q |
42 |
gattaattatatggtaaggaagatggtgaagatgaatatgagaggtatccaaaattgtggtgaggtagctcctgctctcatcagaatccctaaaaaatgt |
141 |
Q |
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| T |
39182455 |
gattaagtatatgctaaggaagacggtgaagatggaaatgagaagcatccaaaatttccgcgaggtagcttttgctctcatcataa-ccctaaaaaatgt |
39182357 |
T |
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| Q |
142 |
tcttctaaatttccaaggttggagcctatcattgaagaaggacctgagagcttccaaattatgccaaagaggatgttgtttcttgttcccactttcat |
239 |
Q |
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| T |
39182356 |
tgttctaaatttccaaggttggagcctatcattgaagaaggatccgagagcttccatactatgccaaagaagatgttgtttcttgttcccactttcat |
39182259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 69 - 231
Target Start/End: Complemental strand, 28457612 - 28457450
Alignment:
| Q |
69 |
gaagatgaatatgagaggtatccaaaattgtggtgaggtagctcctgctctcatcagaatccctaaaaaatgttcttctaaatttccaaggttggagcct |
168 |
Q |
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| T |
28457612 |
gaagatggaaatgagaagcatccaaaattgccgtgaggtagcttctgctctcatcataacccctaaaaaatgttgttccaaatttccaaggttggagtct |
28457513 |
T |
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| Q |
169 |
atcattgaagaaggacctgagagcttccaaattatgccaaagaggatgttgtttcttgttccc |
231 |
Q |
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| T |
28457512 |
atcattgaagaaggatccgagagcttccaaactatgccaaagaagatgttgtttcttgttccc |
28457450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 3 - 239
Target Start/End: Complemental strand, 40029539 - 40029297
Alignment:
| Q |
3 |
aagggttagttttgtcaattgcaatttgtgattaagattgattaattatatggtaaggaagatggtgaag------atgaatatgagaggtatccaaaat |
96 |
Q |
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| T |
40029539 |
aagggttaatttggttaactacaacttgtgattaagattgattaattaaatgccaaggaagatggtgaaggttgaaatgagattgagaggcattcaaaat |
40029440 |
T |
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| Q |
97 |
tgtggtgaggtagctcctgctctcatcagaatccctaaaaaatgttcttctaaatttccaaggttggagcctatcattgaagaaggacctgagagcttcc |
196 |
Q |
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||||||||||||||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
40029439 |
tgtggtgaggtagctcctgctctgatcataacccctaaaaaatgttcttctaaatttccaaggttggagcctatcattgaagaaggacccaagagcttcc |
40029340 |
T |
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| Q |
197 |
aaattatgccaaagaggatgttgtttcttgttcccactttcat |
239 |
Q |
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||| |||||||||||| |||||||||||||||||| ||||||| |
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| T |
40029339 |
aaactatgccaaagagaatgttgtttcttgttcccgctttcat |
40029297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 62 - 226
Target Start/End: Original strand, 32354402 - 32354572
Alignment:
| Q |
62 |
agatggtgaagatgaatatgagaggtatccaaaattgtggtgaggtagctcctgctctcatcagaatccctaaaaaatg---ttcttctaaatttccaag |
158 |
Q |
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|||||||||||||| | |||| ||| |||||||||||||||||||| || ||||||||| ||| || ||||| |||||| ||||||||||||| |||| |
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| T |
32354402 |
agatggtgaagatggaaatgaaaggcatccaaaattgtggtgaggttgcacctgctctcctcataacccctagaaaatgctcttcttctaaattttcaag |
32354501 |
T |
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| Q |
159 |
gttggagcctatcattgaagaaggacctgagagcttccaaat---tatgccaaagaggatgttgtttcttg |
226 |
Q |
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|||||| |||||||||||||||||| |||| || || || || ||||||||||| |||||||||||||| |
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| T |
32354502 |
gttggaacctatcattgaagaaggagctgaaagtttacatattaatatgccaaagaagatgttgtttcttg |
32354572 |
T |
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