View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7765_high_34 (Length: 232)

Name: NF7765_high_34
Description: NF7765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7765_high_34
NF7765_high_34
[»] chr7 (33 HSPs)
chr7 (21-187)||(1365980-1366149)
chr7 (22-209)||(26633311-26633501)
chr7 (60-209)||(36438315-36438467)
chr7 (26-186)||(26282469-26282634)
chr7 (26-208)||(32956724-32956910)
chr7 (22-209)||(40001636-40001812)
chr7 (22-209)||(33910012-33910204)
chr7 (22-134)||(25610091-25610205)
chr7 (22-154)||(773808-773943)
chr7 (26-142)||(44876087-44876202)
chr7 (22-142)||(12251212-12251335)
chr7 (84-205)||(9479079-9479202)
chr7 (21-143)||(30739139-30739263)
chr7 (22-154)||(44893953-44894088)
chr7 (29-143)||(46221634-46221751)
chr7 (22-154)||(7636249-7636385)
chr7 (21-209)||(18015503-18015698)
chr7 (63-187)||(18895364-18895490)
chr7 (22-154)||(36796295-36796431)
chr7 (27-154)||(4099973-4100104)
chr7 (22-154)||(42312014-42312147)
chr7 (27-209)||(6380013-6380200)
chr7 (84-187)||(41908149-41908253)
chr7 (98-188)||(40737994-40738085)
chr7 (22-183)||(41852225-41852387)
chr7 (22-154)||(42161046-42161179)
chr7 (21-172)||(11672572-11672727)
chr7 (32-109)||(40841180-40841259)
chr7 (63-187)||(7366658-7366784)
chr7 (22-136)||(33419041-33419158)
chr7 (27-109)||(28590074-28590157)
chr7 (66-156)||(3799731-3799821)
chr7 (92-143)||(8358291-8358342)
[»] chr6 (25 HSPs)
chr6 (22-187)||(1092966-1093133)
chr6 (22-187)||(29308392-29308560)
chr6 (22-154)||(628020-628154)
chr6 (22-143)||(6754222-6754346)
chr6 (86-209)||(30915357-30915482)
chr6 (22-154)||(2618360-2618495)
chr6 (63-187)||(3748535-3748661)
chr6 (84-187)||(1690622-1690726)
chr6 (93-209)||(31860951-31861067)
chr6 (52-141)||(11088564-11088655)
chr6 (25-152)||(29401147-29401277)
chr6 (52-154)||(12614670-12614775)
chr6 (22-209)||(29149351-29149543)
chr6 (22-154)||(57693-57828)
chr6 (22-154)||(6360765-6360899)
chr6 (22-134)||(6294279-6294392)
chr6 (22-143)||(22503759-22503883)
chr6 (64-154)||(21946112-21946203)
chr6 (25-154)||(3514777-3514909)
chr6 (51-187)||(350385-350524)
chr6 (90-154)||(7525161-7525225)
chr6 (90-154)||(14893412-14893476)
chr6 (84-143)||(19231628-19231687)
chr6 (32-79)||(31861067-31861115)
chr6 (114-154)||(31234916-31234956)
[»] chr5 (27 HSPs)
chr5 (22-187)||(3349654-3349821)
chr5 (22-188)||(20975955-20976124)
chr5 (22-187)||(43511589-43511757)
chr5 (22-187)||(4734507-4734675)
chr5 (30-187)||(42291814-42291974)
chr5 (32-184)||(17513871-17514026)
chr5 (22-209)||(29156138-29156329)
chr5 (26-188)||(5829355-5829518)
chr5 (22-186)||(10591198-10591365)
chr5 (63-209)||(138092-138241)
chr5 (22-154)||(13474635-13474770)
chr5 (26-209)||(27351297-27351484)
chr5 (22-154)||(19099238-19099373)
chr5 (22-154)||(40956318-40956452)
chr5 (58-209)||(10033494-10033649)
chr5 (22-154)||(33281679-33281813)
chr5 (22-106)||(8379368-8379453)
chr5 (63-154)||(7390367-7390459)
chr5 (22-154)||(13656215-13656350)
chr5 (27-209)||(40779140-40779324)
chr5 (26-154)||(12661314-12661445)
chr5 (22-154)||(13423869-13424004)
chr5 (72-143)||(18873473-18873545)
chr5 (22-209)||(26377697-26377890)
chr5 (63-143)||(17325860-17325942)
chr5 (52-154)||(931385-931484)
chr5 (84-187)||(16515495-16515599)
[»] chr4 (24 HSPs)
chr4 (26-187)||(55134179-55134344)
chr4 (22-187)||(45172570-45172737)
chr4 (39-209)||(21791490-21791663)
chr4 (22-209)||(5545277-5545468)
chr4 (58-209)||(35653941-35654096)
chr4 (22-154)||(19661384-19661519)
chr4 (36-209)||(34982172-34982349)
chr4 (22-154)||(41038255-41038390)
chr4 (32-209)||(23426100-23426282)
chr4 (23-186)||(10575450-10575615)
chr4 (26-209)||(32130718-32130906)
chr4 (22-154)||(53011717-53011852)
chr4 (63-187)||(43154755-43154881)
chr4 (22-143)||(11681666-11681790)
chr4 (22-143)||(11689945-11690069)
chr4 (66-209)||(22423632-22423780)
chr4 (85-209)||(24449072-24449200)
chr4 (22-154)||(44478044-44478180)
chr4 (24-143)||(23256610-23256731)
chr4 (22-186)||(27632370-27632538)
chr4 (22-154)||(28463512-28463647)
chr4 (22-142)||(29579897-29580020)
chr4 (26-120)||(51066353-51066449)
chr4 (22-186)||(29221545-29221713)
[»] chr8 (23 HSPs)
chr8 (17-187)||(34523871-34524044)
chr8 (26-185)||(39697867-39698029)
chr8 (22-186)||(12531531-12531698)
chr8 (22-186)||(23567199-23567366)
chr8 (22-209)||(32098103-32098294)
chr8 (26-208)||(5869253-5869435)
chr8 (22-154)||(43926247-43926382)
chr8 (66-209)||(3628717-3628863)
chr8 (22-154)||(18420533-18420668)
chr8 (23-153)||(30915214-30915346)
chr8 (27-209)||(43967999-43968186)
chr8 (90-186)||(3471572-3471669)
chr8 (22-154)||(7858090-7858225)
chr8 (22-142)||(13585316-13585439)
chr8 (22-171)||(18112103-18112257)
chr8 (85-209)||(35874872-35875000)
chr8 (32-143)||(44664980-44665094)
chr8 (52-154)||(1004063-1004170)
chr8 (51-134)||(33452816-33452901)
chr8 (60-186)||(27074546-27074675)
chr8 (22-141)||(42777763-42777884)
chr8 (100-172)||(42951774-42951847)
chr8 (63-142)||(29372374-29372454)
[»] chr2 (33 HSPs)
chr2 (22-187)||(18172865-18173033)
chr2 (22-187)||(38985634-38985802)
chr2 (22-141)||(17117570-17117691)
chr2 (32-187)||(15457471-15457630)
chr2 (22-209)||(21747155-21747346)
chr2 (63-209)||(39081346-39081494)
chr2 (42-187)||(18915999-18916147)
chr2 (40-209)||(36059848-36060021)
chr2 (22-209)||(19367343-19367535)
chr2 (40-143)||(13997330-13997434)
chr2 (22-154)||(26151671-26151806)
chr2 (55-184)||(38599376-38599507)
chr2 (22-154)||(18676234-18676370)
chr2 (84-209)||(1418858-1418984)
chr2 (22-154)||(41096461-41096597)
chr2 (22-154)||(2063810-2063945)
chr2 (22-154)||(45618982-45619116)
chr2 (27-154)||(4855998-4856128)
chr2 (22-154)||(7993637-7993773)
chr2 (22-209)||(42411482-42411674)
chr2 (91-174)||(6530643-6530727)
chr2 (90-208)||(34061851-34061971)
chr2 (26-171)||(31273095-31273242)
chr2 (65-154)||(27302497-27302587)
chr2 (60-154)||(13020428-13020524)
chr2 (53-141)||(42759711-42759802)
chr2 (27-209)||(45042337-45042525)
chr2 (64-140)||(1226234-1226312)
chr2 (63-187)||(29480604-29480730)
chr2 (26-141)||(13001655-13001772)
chr2 (24-125)||(36481428-36481532)
chr2 (22-154)||(25222328-25222463)
chr2 (84-187)||(18482495-18482600)
[»] chr1 (36 HSPs)
chr1 (22-187)||(12971377-12971545)
chr1 (26-186)||(27703459-27703621)
chr1 (63-209)||(37873729-37873878)
chr1 (22-154)||(18127861-18127996)
chr1 (22-154)||(25930609-25930743)
chr1 (23-187)||(5560454-5560622)
chr1 (22-209)||(10109668-10109860)
chr1 (32-209)||(50371082-50371263)
chr1 (24-209)||(44836653-44836837)
chr1 (22-154)||(48722294-48722429)
chr1 (22-209)||(17674280-17674470)
chr1 (22-142)||(6150738-6150862)
chr1 (22-209)||(15441238-15441428)
chr1 (63-209)||(42740058-42740207)
chr1 (22-154)||(30899661-30899798)
chr1 (27-154)||(33124559-33124689)
chr1 (66-209)||(12884107-12884253)
chr1 (66-186)||(24556778-24556900)
chr1 (22-154)||(12-147)
chr1 (22-154)||(28885595-28885730)
chr1 (63-143)||(13120833-13120914)
chr1 (25-154)||(50552500-50552632)
chr1 (22-136)||(1269574-1269689)
chr1 (22-142)||(29208022-29208145)
chr1 (60-154)||(30004871-30004966)
chr1 (26-143)||(6333447-6333564)
chr1 (22-143)||(51110025-51110149)
chr1 (22-140)||(9777432-9777552)
chr1 (32-143)||(17487217-17487331)
chr1 (63-143)||(22386803-22386885)
chr1 (25-153)||(14084627-14084759)
chr1 (22-154)||(20905210-20905346)
chr1 (21-141)||(26486298-26486419)
chr1 (22-143)||(52055568-52055691)
chr1 (85-171)||(3907459-3907545)
chr1 (51-109)||(31369358-31369418)
[»] chr3 (33 HSPs)
chr3 (26-187)||(48626959-48627122)
chr3 (63-208)||(42009229-42009377)
chr3 (26-154)||(51939483-51939615)
chr3 (63-205)||(36538153-36538298)
chr3 (22-187)||(43905778-43905936)
chr3 (63-209)||(7767011-7767163)
chr3 (23-154)||(13401464-13401599)
chr3 (21-154)||(18408196-18408332)
chr3 (63-209)||(50677281-50677430)
chr3 (58-187)||(27303158-27303289)
chr3 (22-172)||(52655047-52655201)
chr3 (22-208)||(25599011-25599201)
chr3 (22-154)||(24252625-24252760)
chr3 (22-209)||(21784707-21784900)
chr3 (29-187)||(19965812-19965973)
chr3 (66-154)||(28132705-28132794)
chr3 (18-152)||(15987207-15987343)
chr3 (84-187)||(46904713-46904817)
chr3 (84-209)||(21596283-21596410)
chr3 (84-143)||(41707044-41707103)
chr3 (32-154)||(54430557-54430682)
chr3 (32-187)||(1649767-1649924)
chr3 (22-209)||(23164496-23164688)
chr3 (51-154)||(40152084-40152189)
chr3 (22-209)||(46791621-46791813)
chr3 (22-154)||(29387678-29387813)
chr3 (22-154)||(8364177-8364313)
chr3 (25-141)||(6715457-6715576)
chr3 (22-154)||(23067648-23067784)
chr3 (60-143)||(51146953-51147038)
chr3 (63-154)||(1255019-1255109)
chr3 (84-154)||(4207347-4207413)
chr3 (53-154)||(20762054-20762158)
[»] scaffold0181 (1 HSPs)
scaffold0181 (22-154)||(17056-17191)
[»] scaffold0126 (1 HSPs)
scaffold0126 (22-209)||(16658-16850)
[»] scaffold0564 (1 HSPs)
scaffold0564 (22-134)||(1086-1201)
[»] scaffold0100 (1 HSPs)
scaffold0100 (22-143)||(46099-46221)
[»] scaffold0606 (1 HSPs)
scaffold0606 (63-142)||(8360-8442)
[»] scaffold0035 (1 HSPs)
scaffold0035 (22-134)||(22729-22844)


Alignment Details
Target: chr7 (Bit Score: 118; Significance: 2e-60; HSPs: 33)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 21 - 187
Target Start/End: Complemental strand, 1366149 - 1365980
Alignment:
Q  21 aaacggtgtcatttggatttgtcacttattcgttgtgggaaaggg-aaaacgaatggtttatgt-aaaaagaaatgattgttgtgattcttcctatgaaa 118  Q
    ||||||||||||||| || ||||| |||| ||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| ||||||||    
T  1366149 aaacggtgtcatttgaatatgtcaattatccgttgtgggaaaggggaaaacgaatggtttatgtgaaaaagaaatgattgttgtgattctttctatgaaa 1366050  T
Q  119 tagcttttcaaattgactgattaagccattata-caattggtagtggtttgatagtaccaaatttatgtc 187  Q
    || |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  1366049 taacttttcaaattgactgattaagtcattataccaattggtagtggtttgatagtaccaaatttatgtc 1365980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 22 - 209
Target Start/End: Complemental strand, 26633501 - 26633311
Alignment:
Q  22 aacggtgtcatttggatttgtcacttattcgttgtgggaaagggaaaac-gaatggtttatgt-aaaaagaaatgattgttgtgattcttcctatgaaat 119  Q
    ||||||||| |||||| | |||||| || ||| |||||||||||||||  ||||||||||||  |||||||||||||||||||||||||| | |||||||    
T  26633501 aacggtgtcgtttggaat-gtcactcatacgtcgtgggaaagggaaaaatgaatggtttatgcgaaaaagaaatgattgttgtgattctttcaatgaaat 26633403  T
Q  120 agcttttcaaattgactgattaagccattatac-aattggtagtggtttgatagtaccaaatttatgt-cagaaagaataactagagtctag 209  Q
    ||||||||||||||||||||||||  ||||||| ||||| | ||||||| |||| | ||||||||||| ||||||| | |||||||||||||    
T  26633402 agcttttcaaattgactgattaagtgattatacaaattgatggtggttttatagcatcaaatttatgtccagaaagtagaactagagtctag 26633311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 60 - 209
Target Start/End: Original strand, 36438315 - 36438467
Alignment:
Q  60 aaagggaaaacgaatggtttatgt-aaaaagaaatgattgttgtgattcttcctatgaaatagcttttcaaattgactgattaagccattatac-aattg 157  Q
    |||||||||||||||||||||||| ||||| |||| ||||||||||||||| | ||||||| | |||||||||||||||||||||  ||||||| |||||    
T  36438315 aaagggaaaacgaatggtttatgtgaaaaataaattattgttgtgattctttcaatgaaatggtttttcaaattgactgattaagtgattatacaaattg 36438414  T
Q  158 gtagtggtttgatagtaccaaatttatgt-cagaaagaataactagagtctag 209  Q
     |||||||||||||| | ||||||||||| ||||||| | |||||||| ||||    
T  36438415 atagtggtttgatagcatcaaatttatgtccagaaagtagaactagagcctag 36438467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 26 - 186
Target Start/End: Original strand, 26282469 - 26282634
Alignment:
Q  26 gtgtcatttggatttgtcacttattcgttgtgggaaagg-gaaaacgaatggtttatgtaaa---aagaaatgattgttgtgattcttcctatgaaatag 121  Q
    |||||||||| |||| ||||||||  ||||||||||||| ||||| ||||| ||||| | ||   || |||||||||||||||||||| | |||||||||    
T  26282469 gtgtcatttgtatttttcacttatatgttgtgggaaaggagaaaatgaatgatttatatgaagaaaaaaaatgattgttgtgattctttcaatgaaatag 26282568  T
Q  122 cttttcaaattgactgattaagccattatac-aattggtagtggtttgatagtaccaaatttatgt 186  Q
    ||||||||||||||||||||||  ||||||| ||||||  ||||||||||||||||| ||||||||    
T  26282569 cttttcaaattgactgattaagtgattatacaaattgggggtggtttgatagtaccagatttatgt 26282634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 26 - 208
Target Start/End: Complemental strand, 32956910 - 32956724
Alignment:
Q  26 gtgtcatttggatttgtcacttattcgttgtgggaaaggg-aaaacgaatggtttatgt-aaaaagaaatgattgttgtgattcttcctatgaaatagct 123  Q
    ||||| ||||||||||||||| || ||||||||||||||| |||||||||||||||||  |||||||||| ||||||||||||||| | |||||||| ||    
T  32956910 gtgtcgtttggatttgtcactcatccgttgtgggaaaggggaaaacgaatggtttatgcgaaaaagaaatcattgttgtgattctttcaatgaaataact 32956811  T
Q  124 tttcaaattgactgattaagccattat-acaattggtagtggtttgatagtaccaaatttatgt-cagaaagaataactagagtcta 208  Q
    ||  |||||||||||||||   ||||| | ||||||  |||||||||||| | || |||||||| ||||||| | ||||||||||||    
T  32956810 ttataaattgactgattaaatgattataaaaattgggggtggtttgatagcatcagatttatgtccagaaaggagaactagagtcta 32956724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 22 - 209
Target Start/End: Original strand, 40001636 - 40001812
Alignment:
Q  22 aacggtgtcatttggatttgtcacttattcgttgtgggaaagggaaaa-cgaatggtttatgtaaaaagaaatgattgttgtgattcttcctatgaaata 120  Q
    ||||| ||| |||| ||||||||||||| ||||||||||||||||||| ||||||||||              |||||||||||||||| | ||||||||    
T  40001636 aacggcgtcgtttgaatttgtcacttatccgttgtgggaaagggaaaaacgaatggttt--------------gattgttgtgattctttcaatgaaata 40001721  T
Q  121 gcttttcaaattgactgattaagccattatac-aattggtagtggtttgatagtaccaaatttatg-tcagaaagaataactagagtctag 209  Q
    |||||||||||||||||||||||  ||||||| ||||||  ||||||||||||||||| ||||||| ||||| |||| ||||| |||||||    
T  40001722 gcttttcaaattgactgattaagtgattatacaaattggaggtggtttgatagtaccagatttatgttcagatagaagaactaaagtctag 40001812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 22 - 209
Target Start/End: Complemental strand, 33910204 - 33910012
Alignment:
Q  22 aacggtgtcatttggatttgtcacttattcgttgtgggaaaggg-aaaacgaatggtttatgtaaa--aagaaatgattgttgtgattcttcctatgaaa 118  Q
    ||||||||| ||||||||||| | |  |  ||||||| |||||| |||||||||||||||||  ||  || |||||||||||||||||||| | ||||||    
T  33910204 aacggtgtcgtttggatttgtaattcctctgttgtggaaaagggtaaaacgaatggtttatgcgaagaaaaaaatgattgttgtgattctttcaatgaaa 33910105  T
Q  119 tagcttttcaaattgactgattaagccattatac-aattggtagtggtttgatagtaccaaatttatgt-cagaaagaataactagagtctag 209  Q
    |||||||||||||||||||||||||| ||||||| |||| |  ||| |||||||| | || |||||||| || |||| | |||||||||||||    
T  33910104 tagcttttcaaattgactgattaagcgattatacaaattaggggtgatttgataggatcagatttatgtacaaaaaggagaactagagtctag 33910012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 22 - 134
Target Start/End: Complemental strand, 25610205 - 25610091
Alignment:
Q  22 aacggtgtcatttggatttgtcacttattcgttgtgggaaaggg-aaaacgaatggtttatgt-aaaaagaaatgattgttgtgattcttcctatgaaat 119  Q
    ||||||||| |||||||||||||| ||| | ||||||||||||| ||||| | |||||||||| |||||||||||||||||||||||||| | |||||||    
T  25610205 aacggtgtcgtttggatttgtcacctatccattgtgggaaaggggaaaactattggtttatgtgaaaaagaaatgattgttgtgattctttcaatgaaat 25610106  T
Q  120 agcttttcaaattga 134  Q
      |||||||||||||    
T  25610105 gacttttcaaattga 25610091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 22 - 154
Target Start/End: Original strand, 773808 - 773943
Alignment:
Q  22 aacggtgtcatttggatttgtcacttattcgttgtgggaaagggaaaacgaatggtttatgta---aaaagaaatgattgttgtgattcttcctatgaaa 118  Q
    ||||| ||| |||| |||||| |||  | |||||| ||||||||||||||||||||||||| |   |||| |||||||||||||||||||| | || |||    
T  773808 aacggcgtcgtttgaatttgtgactcctccgttgttggaaagggaaaacgaatggtttatgcacaaaaaaaaaatgattgttgtgattctttcaataaaa 773907  T
Q  119 tagcttttcaaattgactgattaagccattatacaa 154  Q
    ||||||||||||||||||||| |||  |||||||||    
T  773908 tagcttttcaaattgactgataaagtaattatacaa 773943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 26 - 142
Target Start/End: Original strand, 44876087 - 44876202
Alignment:
Q  26 gtgtcatttggatttgtcacttattcgttgtgggaaagggaaaacgaatggtttatgtaaaaagaaatgattgttgtgattcttcctatgaaatagcttt 125  Q
    ||||| |||||||||||||||  ||| |||||| |||||||||||||||||||||||   ||| ||||||||||||||||||||   |||||||||||||    
T  44876087 gtgtcgtttggatttgtcactccttcattgtgg-aaagggaaaacgaatggtttatgcggaaaaaaatgattgttgtgattcttttaatgaaatagcttt 44876185  T
Q  126 tcaaattgactgattaa 142  Q
      |||||||||||||||    
T  44876186 ctaaattgactgattaa 44876202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 22 - 142
Target Start/End: Original strand, 12251212 - 12251335
Alignment:
Q  22 aacggtgtcatttggatttgtcacttattcgttgtgggaaaggg-aaaacgaatggtttatgtaaa--aagaaatgattgttgtgattcttcctatgaaa 118  Q
    ||||||| | |||||||||||||||  |  ||||||| |||||| |||||||||||||||||  ||  || |||||||||||||||||||| | ||||||    
T  12251212 aacggtgacgtttggatttgtcactcctctgttgtggaaaagggtaaaacgaatggtttatgcgaagaaaaaaatgattgttgtgattctttcaatgaaa 12251311  T
Q  119 tagcttttcaaattgactgattaa 142  Q
    ||||||| ||||||||||||||||    
T  12251312 tagctttccaaattgactgattaa 12251335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 84 - 205
Target Start/End: Complemental strand, 9479202 - 9479079
Alignment:
Q  84 aaaaagaaatgattgttgtgattcttcctatgaaatagcttttcaaattgactgattaagccattatac-aattggtagtggtttgatagtaccaaattt 182  Q
    |||||||||| ||||||||||||||| | | ||||||| |||| ||||||||||||||||  ||||||| ||||| | |||||||||||| | |||||||    
T  9479202 aaaaagaaataattgttgtgattctttcaacgaaatagttttttaaattgactgattaagtaattatacaaattgatggtggtttgatagcatcaaattt 9479103  T
Q  183 atgt-cagaaagaataactagagt 205  Q
    |||| ||||||| | |||||||||    
T  9479102 atgtccagaaagtagaactagagt 9479079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 21 - 143
Target Start/End: Complemental strand, 30739263 - 30739139
Alignment:
Q  21 aaacggtgtcatttggatttgtcacttattcgttgtgggaaaggg-aaaacgaatggtttatgtaaaaag-aaatgattgttgtgattcttcctatgaaa 118  Q
    ||||||||||||||||||||||||||    |||||||  |||||| ||||| ||| |||||||  ||||| ||||||| ||||||||||||   ||||||    
T  30739263 aaacggtgtcatttggatttgtcactccgccgttgtgaaaaaggggaaaactaattgtttatgcgaaaaggaaatgatcgttgtgattcttttaatgaaa 30739164  T
Q  119 tagcttttcaaattgactgattaag 143  Q
    || ||||||||||||||||||||||    
T  30739163 taacttttcaaattgactgattaag 30739139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 22 - 154
Target Start/End: Original strand, 44893953 - 44894088
Alignment:
Q  22 aacggtgtcatttggatttgtcacttattcgttgtgggaaaggg-aaaacgaatggtttatgtaaa--aagaaatgattgttgtgattcttcctatgaaa 118  Q
    ||||||||| |||| |||||| |||  || | ||||| |||||| |||||||||||||||||| ||  || |||||||||||||||||||| | || |||    
T  44893953 aacggtgtcgtttgaatttgtaactcctttgctgtggaaaagggtaaaacgaatggtttatgtgaagaaaaaaatgattgttgtgattctttcaataaaa 44894052  T
Q  119 tagcttttcaaattgactgattaagccattatacaa 154  Q
    ||||||| |||||||| ||||||||  |||||||||    
T  44894053 tagctttccaaattgattgattaagtgattatacaa 44894088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 29 - 143
Target Start/End: Original strand, 46221634 - 46221751
Alignment:
Q  29 tcatttggatttgtcacttattc-gttgtgggaaaggg-aaaacgaatggtttatgtaaa--aagaaatgattgttgtgattcttcctatgaaatagctt 124  Q
    |||||||||||||||| || ||| ||||||| ||| || |||||||||||||||||  ||  || |||||||||||||||||||| | ||||||||||||    
T  46221634 tcatttggatttgtca-ttcttctgttgtggaaaatggtaaaacgaatggtttatgcgaataaaaaaatgattgttgtgattctttcaatgaaatagctt 46221732  T
Q  125 ttcaaattgactgattaag 143  Q
    | |||||||||||||||||    
T  46221733 tccaaattgactgattaag 46221751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 22 - 154
Target Start/End: Original strand, 7636249 - 7636385
Alignment:
Q  22 aacggtgtcatttggatttgtcacttattcgttgtgggaaaggg-aaaacgaatggtttatgtaaa---aagaaatgattgttgtgattcttcctatgaa 117  Q
    |||||| || |||| ||||||||||  |  ||||||| |||||| ||||||||||| |||||  ||   || |||||||||||| ||||||| | |||||    
T  7636249 aacggtatcgtttgaatttgtcactcttctgttgtggaaaagggtaaaacgaatggcttatgggaagaaaaaaaatgattgttgcgattctttcaatgaa 7636348  T
Q  118 atagcttttcaaattgactgattaagccattatacaa 154  Q
    ||||||||||||||||||||||||||  |||||||||    
T  7636349 atagcttttcaaattgactgattaagtaattatacaa 7636385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 21 - 209
Target Start/End: Original strand, 18015503 - 18015698
Alignment:
Q  21 aaacggtgtcatttggatttgtcacttattcgttgtgggaaaggg-aaaacgaatggtttatgt----aaaaagaaatgattgttgtgattcttcctatg 115  Q
    |||||||||| |||| ||||||||||| |  ||||||  |||||| ||||||||||||| |||     ||||| |||| ||||||||||||||| | |||    
T  18015503 aaacggtgtcgtttgaatttgtcacttttctgttgtgtaaaagggtaaaacgaatggttaatgcgaagaaaaaaaaataattgttgtgattctttcaatg 18015602  T
Q  116 aaatagcttttcaaattgactgattaagccattatac-aattggtagtggtttgatagtaccaaatttatgt-cagaaagaataactagagtctag 209  Q
    |||||||||| |||||||| ||||||||  ||||||| |||| |  |||||||||||| | |  |||||||| || |||| | |||||||||||||    
T  18015603 aaatagctttccaaattgattgattaagtgattatacaaattaggggtggtttgataggatccgatttatgtacaaaaaggaaaactagagtctag 18015698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 63 - 187
Target Start/End: Original strand, 18895364 - 18895490
Alignment:
Q  63 gggaaaacgaatggtttatgtaaaaag-aaatgattgttgtgattcttcctatgaaatagcttttcaaattgactgattaagccattatac-aattggta 160  Q
    |||||||||||| |||||||  ||||| |||| ||||||||||||||| | |||||||| ||||| |||||||||||||||   ||||||| ||||  ||    
T  18895364 gggaaaacgaattgtttatgcgaaaaggaaataattgttgtgattctttcaatgaaataactttttaaattgactgattaattgattatacaaattaata 18895463  T
Q  161 gtggtttgatagtaccaaatttatgtc 187  Q
    |||||||||||  | ||||||||||||    
T  18895464 gtggtttgataacatcaaatttatgtc 18895490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 22 - 154
Target Start/End: Original strand, 36796295 - 36796431
Alignment:
Q  22 aacggtgtcatttggatttgtcacttattcgttgtgggaaaggg-aaaacgaatggtttatgtaaa---aagaaatgattgttgtgattcttcctatgaa 117  Q
    ||||||||| ||| |||||||||||  |  ||||||| |||||| |||||||||||||||||  ||   || |||||||||||||||||||| | |||||    
T  36796295 aacggtgtcgttttgatttgtcactcctctgttgtggaaaagggtaaaacgaatggtttatgcgaagaaaaaaaatgattgttgtgattctttcaatgaa 36796394  T
Q  118 atagcttttcaaattgactgattaagccattatacaa 154  Q
    |||  ||| |||||||||||||||||  |||||||||    
T  36796395 ataattttccaaattgactgattaagttattatacaa 36796431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 27 - 154
Target Start/End: Complemental strand, 4100104 - 4099973
Alignment:
Q  27 tgtcatttggatttgtcacttattcgttgtgggaaaggg--aaaacgaatggtttatgtaaa--aagaaatgattgttgtgattcttcctatgaaatagc 122  Q
    |||| |||||||||||||||  |  ||||||| ||||||  |||||||||||||| ||  ||  || ||||||||||||| |||||| | ||||||||||    
T  4100104 tgtcgtttggatttgtcactcctctgttgtggaaaagggtaaaaacgaatggtttttgcgaagaaaaaaatgattgttgtaattctttcaatgaaatagc 4100005  T
Q  123 ttttcaaattgactgattaagccattatacaa 154  Q
    |||||||||||| ||||||||  |||||||||    
T  4100004 ttttcaaattgattgattaagtgattatacaa 4099973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 22 - 154
Target Start/End: Complemental strand, 42312147 - 42312014
Alignment:
Q  22 aacggtgtcatttggatttgtcacttattcgttgtgggaaagggaaaacgaatggtttatgt-aaaaagaaatgattgttgtgattcttcctatgaaata 120  Q
    ||||||||| ||| |||||||| || || |||||||| || ||||||||||||  |||| |  ||||| |||||| |||||||||||||   ||||||||    
T  42312147 aacggtgtcgtttagatttgtcgctcatccgttgtggaaaggggaaaacgaattatttaagcgaaaaataaatgactgttgtgattcttttaatgaaata 42312048  T
Q  121 gcttttcaaattgactgattaagccattatacaa 154  Q
    |||||||||||||||| || |||  |||||||||    
T  42312047 gcttttcaaattgactaatcaagtgattatacaa 42312014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 27 - 209
Target Start/End: Original strand, 6380013 - 6380200
Alignment:
Q  27 tgtcatttggatttgtcacttattcgttgtgggaaaggg-aaaacgaatggtttatgtaaaaagaaat--gattgttgtgattcttcctatgaaatagct 123  Q
    |||| |||||||||||||||  |  ||||||| |||||| |||||||||||||||||  || | ||||  |||||||||||||||| | |||||||||      
T  6380013 tgtcgtttggatttgtcactcctctgttgtggaaaagggtaaaacgaatggtttatgcgaagaaaaatatgattgttgtgattctttcaatgaaatagac 6380112  T
Q  124 tttcaaattgactgattaagccattatac-aattggtagtggtttgatagtaccaaatttatgt-cagaaagaataactagagtctag 209  Q
    || |||||||| ||||||||  ||||||| |||| |  |||||||||||| | || ||| |||| || |||||| |||||||||||||    
T  6380113 ttccaaattgattgattaagtgattatacaaattaggggtggtttgataggatcagattcatgtacaaaaagaagaactagagtctag 6380200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 84 - 187
Target Start/End: Complemental strand, 41908253 - 41908149
Alignment:
Q  84 aaaaagaaatgattgttgtgattcttcctatgaaatagcttttcaaattgactgattaagccattatac-aattggtagtggtttgatagtaccaaattt 182  Q
    |||||||||||||||||||||||||| | |||||| |||||||| |||||||||||||||  ||| ||| ||||||  ||||||||| || | || ||||    
T  41908253 aaaaagaaatgattgttgtgattctttcaatgaaacagcttttctaattgactgattaagtgattgtacaaattggaggtggtttgaaagcatcagattt 41908154  T
Q  183 atgtc 187  Q
    |||||    
T  41908153 atgtc 41908149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 98 - 188
Target Start/End: Original strand, 40737994 - 40738085
Alignment:
Q  98 gttgtgattcttcctatgaaatagcttttcaaattgactgattaagccattatac-aattggtagtggtttgatagtaccaaatttatgtca 188  Q
    |||||||||||| | || ||||||||||| ||||||||||||||||  ||||||| ||||| | |||||||||||| | |||||||||||||    
T  40737994 gttgtgattctttcaataaaatagctttttaaattgactgattaagtaattatacaaattgatggtggtttgatagcatcaaatttatgtca 40738085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 22 - 183
Target Start/End: Original strand, 41852225 - 41852387
Alignment:
Q  22 aacggtgtcatttggatttgtcacttattcgttgtgggaaaggg-aaaacgaatggtttatgtaaaa-agaaatgattgttgtgattcttcctatgaaat 119  Q
    ||||||||| |||| ||||||||||  | |||||||| |||||| |||| ||||  |||||| |||| |||||||| ||||| ||||||| | |||||||    
T  41852225 aacggtgtcgtttgaatttgtcactcctccgttgtggaaaaggggaaaatgaattatttatgcaaaaaagaaatgagtgttgcgattctttcaatgaaat 41852324  T
Q  120 agcttttcaaattgactgattaagccattatacaattggtagtggtttgatagtaccaaattta 183  Q
    | || || ||||||||||| ||||  |||||| |||||| |||||||| |||| |||| |||||    
T  41852325 aactctttaaattgactgagtaagtgattataaaattgg-agtggttttatagcaccatattta 41852387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 22 - 154
Target Start/End: Original strand, 42161046 - 42161179
Alignment:
Q  22 aacggtgtcatttggatttgtcacttattcgttgtgggaaaggg-aaaacgaatggtttatgtaaaaagaaatgattgttgtgattcttcctatgaaata 120  Q
    ||||||||| |||||||||||||||  |  ||||||| ||| || |||||||||||||||||  || | ||||  ||| |||||||||| | ||||||||    
T  42161046 aacggtgtcgtttggatttgtcactcctctgttgtggaaaaaggtaaaacgaatggtttatgcgaagaaaaattgttgctgtgattctttcaatgaaata 42161145  T
Q  121 gcttttcaaattgactgattaagccattatacaa 154  Q
    ||||| |||||| |||||| |||  |||||||||    
T  42161146 gctttccaaattaactgatcaagtgattatacaa 42161179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 172
Target Start/End: Complemental strand, 11672727 - 11672572
Alignment:
Q  21 aaacggtgtcatttggatttgtcacttattcgttgtgggaaaggg-aaaacgaatggtttatgtaaa--aagaaatgattgttgtgattcttcctatgaa 117  Q
    ||||| |||| ||| |||||||||||  |  ||||||| |||| | |||||||||| ||||||  ||  || |||||||||||||||||||| |  ||||    
T  11672727 aaacgatgtcgtttagatttgtcactcctctgttgtggaaaagagtaaaacgaatgatttatgcgaagaaaaaaatgattgttgtgattctttcattgaa 11672628  T
Q  118 atagcttttcaaattgactgattaagccattatac-aattggtagtggtttgatag 172  Q
    ||| |||| |||||||||||||||||  ||||||| |||| | |||||||||||||    
T  11672627 ataactttccaaattgactgattaagtgattatacaaattaggagtggtttgatag 11672572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 32 - 109
Target Start/End: Original strand, 40841180 - 40841259
Alignment:
Q  32 tttggatttgtcacttattcgttgtgggaaa-gggaaaacgaatggtttatg-taaaaagaaatgattgttgtgattctt 109  Q
    |||||||||||||||| | |||||| ||||| ||||||||||||||||||||  |||||||||||| |||||| ||||||    
T  40841180 tttggatttgtcacttctccgttgtaggaaaggggaaaacgaatggtttatgcgaaaaagaaatgagtgttgtaattctt 40841259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 63 - 187
Target Start/End: Complemental strand, 7366784 - 7366658
Alignment:
Q  63 gggaaaacgaatggtttatgt-aaaaagaaatgattgttgtgattcttcctatgaaatagcttttcaaattgactgattaagccattatac-aattggta 160  Q
    ||||||| ||||||||||||  |||||||||| ||||||||||||||| | || |||||| |||||||||||||  ||||||  ||||| | ||||| |     
T  7366784 gggaaaatgaatggtttatgcgaaaaagaaataattgttgtgattctttcaataaaatagtttttcaaattgacaaattaagtaattattcaaattgatg 7366685  T
Q  161 gtggtttgatagtaccaaatttatgtc 187  Q
    ||||||| |||  | ||||||||||||    
T  7366684 gtggtttaatatcatcaaatttatgtc 7366658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 22 - 136
Target Start/End: Original strand, 33419041 - 33419158
Alignment:
Q  22 aacggtgtcatttggatttgtcacttattcgttgtgggaaaggg-aaaacgaatggtttatgtaaa--aagaaatgattgttgtgattcttcctatgaaa 118  Q
    ||||||||| |||||||||||||||  |  ||||| | ||| || |||||||||||||||||  ||  || |||||||| ||||||||||| | ||||||    
T  33419041 aacggtgtcgtttggatttgtcactcctctgttgtagaaaatggtaaaacgaatggtttatgcgaagaaaaaaatgattattgtgattctttcaatgaaa 33419140  T
Q  119 tagcttttcaaattgact 136  Q
    || |||||||||||||||    
T  33419141 taacttttcaaattgact 33419158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 109
Target Start/End: Original strand, 28590074 - 28590157
Alignment:
Q  27 tgtcatttggatttgtcacttattcgttgtgggaaa-gggaaaacgaatggtttatgtaaaaagaaatgattgttgtgattctt 109  Q
    |||| |||||||||||||||  | |||||||||||| ||||||||||||||||     |||||||||| |||||||||||||||    
T  28590074 tgtcgtttggatttgtcactcctccgttgtgggaaaggggaaaacgaatggttacgcgaaaaagaaataattgttgtgattctt 28590157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 66 - 156
Target Start/End: Original strand, 3799731 - 3799821
Alignment:
Q  66 aaaacgaatggtttatgtaaaaagaaatgattgttgtgattcttcctatgaaatagcttttcaaattgactgattaagccattatacaatt 156  Q
    |||||||||||||||||   ||| |||||||||||||||||||| | ||||||||||||   |||||| || |||||   |||||||||||    
T  3799731 aaaacgaatggtttatgcggaaaaaaatgattgttgtgattctttcaatgaaatagcttccaaaattggcttattaaatgattatacaatt 3799821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 92 - 143
Target Start/End: Original strand, 8358291 - 8358342
Alignment:
Q  92 atgattgttgtgattcttcctatgaaatagcttttcaaattgactgattaag 143  Q
    |||||||||||||||||| | |||| ||| ||||| ||||||||||||||||    
T  8358291 atgattgttgtgattctttcaatgagataactttttaaattgactgattaag 8358342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 113; Significance: 2e-57; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 22 - 187
Target Start/End: Original strand, 1092966 - 1093133
Alignment:
Q  22 aacggtgtcatttggatttgtcacttattcgttgtgggaaa-gggaaaacgaatggtttatgt-aaaaagaaatgattgttgtgattcttcctatgaaat 119  Q
    |||||||||||||||||||||||||||| |||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||    
T  1092966 aacggtgtcatttggatttgtcacttatccgttttgggaaaggggaaaacgaatggtttatgtgaaaaagaaatgattgttgtgattctttc-atgaaat 1093064  T
Q  120 agcttttcaaattgactgattaagccattata-caattggtagtggtttgatagtaccaaatttatgtc 187  Q
    ||||||| ||||||||||||| || ||||||| ||||||||||||||||||||||||||||||||||||    
T  1093065 agctttttaaattgactgatttagtcattataccaattggtagtggtttgatagtaccaaatttatgtc 1093133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 22 - 187
Target Start/End: Original strand, 29308392 - 29308560
Alignment:
Q  22 aacggtgtcatttggatttgtcacttattcgttgtgggaaaggg-aaaacgaatggtttatgt-aaaaagaaatgattgttgtgattcttcctatgaaat 119  Q
    ||||||||||||| ||||| |||||||| | ||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||  | | |||||||    
T  29308392 aacggtgtcatttagatttatcacttatccattgtgggaaaggggaaaacgaatgatttatgtgaaaaagaaatgattgttgtgattacttcaatgaaat 29308491  T
Q  120 agcttttcaaattgactgattaagccattata-caattggtagtggtttgatagtaccaaatttatgtc 187  Q
    || ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  29308492 agtttttcaaattgactgattaagtcattataccaattggtagtggtttgatagtaccaaatttatgtc 29308560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 22 - 154
Target Start/End: Original strand, 628020 - 628154
Alignment:
Q  22 aacggtgtcatttggatttgtcacttattcgttgtgggaaagggaaaacgaatggtttatgtaaa--aagaaatgattgttgtgattcttcctatgaaat 119  Q
    |||| |||| ||||||||| |||||| |  ||||||| |||||||||||||||||||||||  ||  || |||||||||||||||||||| | |||||||    
T  628020 aacgatgtcgtttggatttatcacttctctgttgtggaaaagggaaaacgaatggtttatgcgaagaaaaaaatgattgttgtgattctttcaatgaaat 628119  T
Q  120 agcttttcaaattgactgattaagccattatacaa 154  Q
    ||||||||||||||||||||||||  |||||||||    
T  628120 agcttttcaaattgactgattaagtgattatacaa 628154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 22 - 143
Target Start/End: Complemental strand, 6754346 - 6754222
Alignment:
Q  22 aacggtgtcatttggatttgtcacttattcgttgtgggaaaggg-aaaacgaatggtttatgtaaa--aagaaatgattgttgtgattcttcctatgaaa 118  Q
    |||||||||||||||||||||||||  |  ||||||| |||||| |||||||||||||||||  ||  || |||||||||||||||||||| | ||||||    
T  6754346 aacggtgtcatttggatttgtcactcctctgttgtggaaaagggtaaaacgaatggtttatgcgaagaaaaaaatgattgttgtgattctttcaatgaaa 6754247  T
Q  119 tagcttttcaaattgactgattaag 143  Q
    ||||||| |||||||||||||||||    
T  6754246 tagctttccaaattgactgattaag 6754222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 86 - 209
Target Start/End: Original strand, 30915357 - 30915482
Alignment:
Q  86 aaagaaatgattgttgtgattcttcctatgaaatagcttttcaaattgactgattaagccattatac-aattggtagtggtttgatagtaccaaatttat 184  Q
    |||||||||||||||||||||||| | || ||||||||||||||||||||||||||||  ||||||| ||||| | | |||||||||| | |||||||||    
T  30915357 aaagaaatgattgttgtgattctttcaattaaatagcttttcaaattgactgattaagtaattatacaaattgatgggggtttgatagcatcaaatttat 30915456  T
Q  185 gt-cagaaagaataactagagtctag 209  Q
    || ||||||| | |||||||||||||    
T  30915457 gtccagaaagtagaactagagtctag 30915482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 22 - 154
Target Start/End: Complemental strand, 2618495 - 2618360
Alignment:
Q  22 aacggtgtcatttggatttgtcacttattcgttgtgggaaaggg-aaaacgaatggtttatgtaaa--aagaaatgattgttgtgattcttcctatgaaa 118  Q
    ||||||||| |||||||||||||||  |  ||||||| |||||| |||||||||||||||||  ||  || |||| ||||||||||||||| | ||||||    
T  2618495 aacggtgtcgtttggatttgtcactcctctgttgtggaaaagggtaaaacgaatggtttatgcgaagaaaaaaataattgttgtgattctttcaatgaaa 2618396  T
Q  119 tagcttttcaaattgactgattaagccattatacaa 154  Q
    |||||||||||||||||||||||||  |||||||||    
T  2618395 tagcttttcaaattgactgattaagtgattatacaa 2618360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 63 - 187
Target Start/End: Original strand, 3748535 - 3748661
Alignment:
Q  63 gggaaaacgaatggtttatgtaa-aaagaaatgattgttgtgattcttcctatgaaatagcttttcaaattgactgattaagccattatac-aattggta 160  Q
    |||||||||||| |||||||| | |||||||| ||||||||||||||| | |||||||||||||||||||||| ||||||||  ||||||| ||||| |     
T  3748535 gggaaaacgaatagtttatgtgacaaagaaataattgttgtgattctttcaatgaaatagcttttcaaattgattgattaagtgattatacaaattgatg 3748634  T
Q  161 gtggtttgatagtaccaaatttatgtc 187  Q
    | |||||||||| | ||||||||||||    
T  3748635 gcggtttgatagcatcaaatttatgtc 3748661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 84 - 187
Target Start/End: Original strand, 1690622 - 1690726
Alignment:
Q  84 aaaaagaaatgattgttgtgattcttcctatgaaatagcttttcaaattgactgattaagccattatac-aattggtagtggtttgatagtaccaaattt 182  Q
    |||||||||||||||||||||||||| | ||||||||  |||||||||||| |||| |||  ||||||| ||||||| ||||||||||||||||| ||||    
T  1690622 aaaaagaaatgattgttgtgattctttcaatgaaataaattttcaaattgattgatcaagtgattatacaaattggtggtggtttgatagtaccagattt 1690721  T
Q  183 atgtc 187  Q
    |||||    
T  1690722 atgtc 1690726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 93 - 209
Target Start/End: Complemental strand, 31861067 - 31860951
Alignment:
Q  93 tgattgttgtgattcttcctatgaaatagcttttcaaattgactgattaagccattatacaattggtagtggtttgatagtaccaaatttatgt-cagaa 191  Q
    ||||||||||||||||| | |||||||||||||||||||||||||||||||  ||||||||| | |  ||||||||||| ||||| |||||||| ||||     
T  31861067 tgattgttgtgattctttcaatgaaatagcttttcaaattgactgattaagtaattatacaaattggggtggtttgata-taccagatttatgtccagat 31860969  T
Q  192 agaataactagagtctag 209  Q
    |||| ||||| |||||||    
T  31860968 agaagaactaaagtctag 31860951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 52 - 141
Target Start/End: Complemental strand, 11088655 - 11088564
Alignment:
Q  52 gttgtgggaaagggaaaacgaatggtttatgtaaaaa-gaaatgattgttgtgattcttcctat-gaaatagcttttcaaattgactgatta 141  Q
    ||||||| |||||| |||| ||||||||||| ||||| |||||||||||||||||||||  ||| |||||||||||||||||||||||||||    
T  11088655 gttgtggtaaaggggaaacaaatggtttatgcaaaaaagaaatgattgttgtgattctttttattgaaatagcttttcaaattgactgatta 11088564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 25 - 152
Target Start/End: Complemental strand, 29401277 - 29401147
Alignment:
Q  25 ggtgtcatttggatttgtcacttattcgttgtgggaaagggaaa-acgaatggtttatgtaaa--aagaaatgattgttgtgattcttcctatgaaatag 121  Q
    ||||||||||||||||||||||  |  || |||| |||||| || ||||||||||||||  ||  || |||||||||||||||||||| | ||||||||     
T  29401277 ggtgtcatttggatttgtcactcctctgtcgtggaaaagggtaagacgaatggtttatgcgaagaaaaaaatgattgttgtgattctttcaatgaaataa 29401178  T
Q  122 cttttcaaattgactgattaagccattatac 152  Q
    ||||||||||||||||||||||  |||||||    
T  29401177 cttttcaaattgactgattaagtgattatac 29401147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 52 - 154
Target Start/End: Original strand, 12614670 - 12614775
Alignment:
Q  52 gttgtgggaaaggg-aaaacgaatggtttatgtaaa--aagaaatgattgttgtgattcttcctatgaaatagcttttcaaattgactgattaagccatt 148  Q
    ||||||| |||||| |||||| ||||||||||  ||  || |||||||||||||||||||| | |||||||||||||||||||||||||||||||  |||    
T  12614670 gttgtggaaaagggtaaaacggatggtttatgcgaagaaaaaaatgattgttgtgattctttcaatgaaatagcttttcaaattgactgattaagtgatt 12614769  T
Q  149 atacaa 154  Q
    ||||||    
T  12614770 atacaa 12614775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 22 - 209
Target Start/End: Complemental strand, 29149543 - 29149351
Alignment:
Q  22 aacggtgtcatttggatttgtcacttattcgttgtgggaaaggg-aaaacgaatggtttatgtaaa--aagaaatgattgttgtgattcttcctatgaaa 118  Q
    |||||| || |||||||||||||||  |  ||||||| |||||| |||||||||||||||||  ||  || |||||||||||||||||||| | |||||     
T  29149543 aacggtatcgtttggatttgtcactcctctgttgtggaaaagggtaaaacgaatggtttatgcgaagaaaaaaatgattgttgtgattctttcaatgaac 29149444  T
Q  119 tagcttttcaaattgactgattaagccattatac-aattggtagtggtttgatagtaccaaatttatgt-cagaaagaataactagagtctag 209  Q
    || |||| |||||||||||||||||  ||||||| |||| |  |||||||||||| | |  |||||||| || |||| | |||||||||||||    
T  29149443 taactttccaaattgactgattaagtgattatacaaattaggtgtggtttgataggatccgatttatgtacaaaaaggagaactagagtctag 29149351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 22 - 154
Target Start/End: Complemental strand, 57828 - 57693
Alignment:
Q  22 aacggtgtcatttggatttgtcacttattcgttgtgggaaaggg-aaaacgaatggtttatgtaaa--aagaaatgattgttgtgattcttcctatgaaa 118  Q
    ||||||||| |||||||||||||||  |   |||||| |||||| |||||||||||||||||  ||  || ||||||||||||||||||||   ||||||    
T  57828 aacggtgtcgtttggatttgtcactcctctattgtggaaaagggtaaaacgaatggtttatgcgaagaaaaaaatgattgttgtgattctttgaatgaaa 57729  T
Q  119 tagcttttcaaattgactgattaagccattatacaa 154  Q
    |||||||  ||||||||||||||||  |||||||||    
T  57728 tagctttctaaattgactgattaagtgattatacaa 57693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 22 - 154
Target Start/End: Complemental strand, 6360899 - 6360765
Alignment:
Q  22 aacggtgtcatttggatttgtcacttattcgttgtgggaaaggg-aaaacgaatggtttat--gtaaaaagaaatgattgttgtgattcttcctatgaaa 118  Q
    ||||||||| |||| ||||||||||  |  ||||||| |||||| ||||||||||||||||  | | ||| |||||||||||||||||||| | |||||     
T  6360899 aacggtgtcgtttgaatttgtcactcctctgttgtggaaaagggtaaaacgaatggtttatacgaagaaaaaaatgattgttgtgattctttcaatgaa- 6360801  T
Q  119 tagcttttcaaattgactgattaagccattatacaa 154  Q
    || ||||||||||||||||||||||  |||||||||    
T  6360800 taacttttcaaattgactgattaagtgattatacaa 6360765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 22 - 134
Target Start/End: Complemental strand, 6294392 - 6294279
Alignment:
Q  22 aacggtgtcatttggatttgtcacttattcgttgtgggaaaggg-aaaacgaatggtttatgt-aaaaagaaatgattgttgtgattcttcctatgaaat 119  Q
    ||||||||| |||||| | ||||||  | ||| ||||||||||| ||||||||| |||||||  |||||||||||||||||||||||||| | |||||||    
T  6294392 aacggtgtcgtttggaat-gtcactcctacgtcgtgggaaaggggaaaacgaatagtttatgcgaaaaagaaatgattgttgtgattctttcaatgaaat 6294294  T
Q  120 agcttttcaaattga 134  Q
     ||||||||||||||    
T  6294293 tgcttttcaaattga 6294279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 22 - 143
Target Start/End: Complemental strand, 22503883 - 22503759
Alignment:
Q  22 aacggtgtcatttggatttgtcacttattcgttgtgggaaaggg-aaaacgaatggtttat--gtaaaaagaaatgattgttgtgattcttcctatgaaa 118  Q
    |||||||||||||| ||||||||||| |  ||||||| |||||| |||| |||||||||||  | | ||| ||||||||||| | |||||| | | ||||    
T  22503883 aacggtgtcatttgaatttgtcacttctctgttgtggaaaagggtaaaatgaatggtttatacgaagaaaaaaatgattgttttaattctttcaacgaaa 22503784  T
Q  119 tagcttttcaaattgactgattaag 143  Q
    ||| |||||||||||||||||||||    
T  22503783 tagtttttcaaattgactgattaag 22503759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 64 - 154
Target Start/End: Complemental strand, 21946203 - 21946112
Alignment:
Q  64 ggaaaacgaatggtttatgt-aaaaagaaatgattgttgtgattcttcctatgaaatagcttttcaaattgactgattaagccattatacaa 154  Q
    ||||||||||| |||||||  |||||||||| |||||| || ||||| | ||||||||||||||||||| |||||||||||  |||||||||    
T  21946203 ggaaaacgaattgtttatgcgaaaaagaaataattgttatggttctttcaatgaaatagcttttcaaatagactgattaagtgattatacaa 21946112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 25 - 154
Target Start/End: Original strand, 3514777 - 3514909
Alignment:
Q  25 ggtgtcatttggatttgtcacttattcgttgtgggaaaggg-aaaacgaatggtttatgtaaa--aagaaatgattgttgtgattcttcctatgaaatag 121  Q
    |||||| ||||||||| |||||  |  ||||||| |||||| |||||||||||||||||  ||  || |||||||||||||||||||| | |||| ||||    
T  3514777 ggtgtcgtttggatttttcactcctctgttgtggaaaagggtaaaacgaatggtttatgcgaagaaaaaaatgattgttgtgattctttcaatgatatag 3514876  T
Q  122 cttttcaaattgactgattaagccattatacaa 154  Q
    |||| |||||||| |||||| |  |||||||||    
T  3514877 ctttccaaattgaatgattacgtgattatacaa 3514909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 51 - 187
Target Start/End: Complemental strand, 350524 - 350385
Alignment:
Q  51 cgttgtgggaaagggaaaacgaatggtttatgt-aaaaagaaatgattgttgtgattcttccta-tgaaatagcttttcaaattgactgattaagccatt 148  Q
    |||| ||||||| || |||| ||| |||||||  ||||||||||||||||||||||||||  || ||||||||||||  ||||||||||||| ||  |||    
T  350524 cgttatgggaaaagggaaacaaattgtttatgcgaaaaagaaatgattgttgtgattctttttattgaaatagctttcgaaattgactgattgagtgatt 350425  T
Q  149 ata-caattggtagtggtttgatagtaccaaatttatgtc 187  Q
    |||  ||||| | |||||||||||| | || |||||||||    
T  350424 atataaattgatggtggtttgatagcatcatatttatgtc 350385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 90 - 154
Target Start/End: Original strand, 7525161 - 7525225
Alignment:
Q  90 aaatgattgttgtgattcttcctatgaaatagcttttcaaattgactgattaagccattatacaa 154  Q
    |||||||||||||||||||| | || ||||| |||| |||||||||||||||||  |||||||||    
T  7525161 aaatgattgttgtgattctttcaataaaataactttccaaattgactgattaagtgattatacaa 7525225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 90 - 154
Target Start/End: Original strand, 14893412 - 14893476
Alignment:
Q  90 aaatgattgttgtgattcttcctatgaaatagcttttcaaattgactgattaagccattatacaa 154  Q
    ||||||||||||||||||||   | ||||||| |||||||||||||||||||||  |||||||||    
T  14893412 aaatgattgttgtgattcttttaacgaaatagtttttcaaattgactgattaagtaattatacaa 14893476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 143
Target Start/End: Complemental strand, 19231687 - 19231628
Alignment:
Q  84 aaaaagaaatgattgttgtgattcttcctatgaaatagcttttcaaattgactgattaag 143  Q
    ||||||||||||||||||||||| || | |||  ||||||||||||||||| ||||||||    
T  19231687 aaaaagaaatgattgttgtgattttttcaatgtcatagcttttcaaattgattgattaag 19231628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 79
Target Start/End: Complemental strand, 31861115 - 31861067
Alignment:
Q  32 tttggatttgtcacttattcgttgtgggaaaggg-aaaacgaatggttt 79  Q
    |||| ||||||||||||| ||||||||||||||| ||||||||||||||    
T  31861115 tttgaatttgtcacttatccgttgtgggaaagggaaaaacgaatggttt 31861067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 154
Target Start/End: Complemental strand, 31234956 - 31234916
Alignment:
Q  114 tgaaatagcttttcaaattgactgattaagccattatacaa 154  Q
    ||||||||||||||||||||| ||||||||  |||||||||    
T  31234956 tgaaatagcttttcaaattgattgattaagtgattatacaa 31234916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 113; Significance: 2e-57; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 22 - 187
Target Start/End: Original strand, 3349654 - 3349821
Alignment:
Q  22 aacggtgtcatttggatttgtcacttattcgttgtgggaaaggg-aaaacgaatggtttatgt-aaaaagaaatgattgttgtgattcttcctatgaaat 119  Q
    |||||||| ||||||||||||||||||| ||||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||| |||||||||    
T  3349654 aacggtgtgatttggatttgtcacttatccgttgtgggaaaggggaaaacgaacggtttatgtgaaaaagaaatgattgttgtgattctttctatgaaat 3349753  T
Q  120 agcttttcaaattgactgattaagccatta-tacaattggtagtggtttgatagtaccaaatttatgtc 187  Q
    |||||||||||||||||||||||| ||||| | ||||||||||||||||||| ||||||||||||||||    
T  3349754 agcttttcaaattgactgattaagtcattattccaattggtagtggtttgat-gtaccaaatttatgtc 3349821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 22 - 188
Target Start/End: Complemental strand, 20976124 - 20975955
Alignment:
Q  22 aacggtgtcatttggatttgtcacttattcgttgtgggaaagg-gaaaacgaatggtttatgt-aaaaagaaatgattgttgtgattcttcctatgaaat 119  Q
    |||||||||||||||||||||||||||| |||||||||||||  |||||||||| |||||||| |||||||||||||||||||||||||| | |||||||    
T  20976124 aacggtgtcatttggatttgtcacttatccgttgtgggaaagacgaaaacgaatagtttatgtgaaaaagaaatgattgttgtgattctttcaatgaaat 20976025  T
Q  120 agcttttcaaattgactgattaagccattatac-aattggtagtggtttgatagtaccaaatttatgtca 188  Q
    |||||||||||||||||||||||   ||||||| ||||||| ||||||||||||||||||||||||||||    
T  20976024 agcttttcaaattgactgattaaatgattatacaaattggtggtggtttgatagtaccaaatttatgtca 20975955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 22 - 187
Target Start/End: Complemental strand, 43511757 - 43511589
Alignment:
Q  22 aacggtgtcatttggatttgtcacttattcgttgtgggaaagggaaaa-cgaatggtttatgt-aaaaagaaatgattgttgtgattcttcctatgaaat 119  Q
    ||||||||| |||||||||||||||||| ||||||||||||||||||| |||||||||||| | |||||||||||||||||||||||||| | |||||||    
T  43511757 aacggtgtcgtttggatttgtcacttatccgttgtgggaaagggaaaaacgaatggtttatatgaaaaagaaatgattgttgtgattctttccatgaaat 43511658  T
Q  120 agcttttcaaattgactgattaagccattatac-aattggtagtggtttgatagtaccaaatttatgtc 187  Q
    ||||||||||||||||||||||||  ||||||| ||||||  ||||||||||||||||| |||||||||    
T  43511657 agcttttcaaattgactgattaagtgattatacaaattgggggtggtttgatagtaccagatttatgtc 43511589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 22 - 187
Target Start/End: Original strand, 4734507 - 4734675
Alignment:
Q  22 aacggtgtcatttggatttgtcacttattcgttgtgggaaa-gggaaaacgaatggtttatgt-aaaaagaaatgattgttgtgattcttcctatgaaat 119  Q
    |||||||||||||||||||||||||||| || ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||    
T  4734507 aacggtgtcatttggatttgtcacttatccgctgtgggaaatgggaaaacgaatggtttatgtgaaaaagaaatgattgttgtgattctttcaatgaaat 4734606  T
Q  120 agcttttcaaattgactgattaagccattatac-aattggtagtggtttgatagtaccaaatttatgtc 187  Q
    || |||||||||||| |||| |||  ||||||| ||||||| ||||||||||||||||| |||||||||    
T  4734607 agattttcaaattgagtgatcaagggattatacaaattggtggtggtttgatagtaccagatttatgtc 4734675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 30 - 187
Target Start/End: Original strand, 42291814 - 42291974
Alignment:
Q  30 catttggatttgtcacttattcgttgtgggaaaggg-aaaacgaatggtttatgt-aaaaagaaatgattgttgtgattcttcctatgaaatagcttttc 127  Q
    |||||||||||||||||||| ||  ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| | ||||||||| |||||    
T  42291814 catttggatttgtcacttatccgcggtgggaaaggggaaaacgaatggtttatgtgaaaaagaaatgattgttgtgattctttcaatgaaatagattttc 42291913  T
Q  128 aaattgactgattaagccattatac-aattggtagtggtttgatagtaccaaatttatgtc 187  Q
    ||||||||||||||||  ||||||| ||||||| ||| |||||||||||||||||||||||    
T  42291914 aaattgactgattaagtgattatacaaattggtggtgatttgatagtaccaaatttatgtc 42291974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 32 - 184
Target Start/End: Original strand, 17513871 - 17514026
Alignment:
Q  32 tttggatttgtcacttattcgttgtgggaaagggaaaa-cgaatggtttatgt-aaaaagaaatgattgttgtgattcttcctatgaaatagcttttcaa 129  Q
    |||||||||||||||||| ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |  ||||||| ||||||||    
T  17513871 tttggatttgtcacttatccgttgtgggaaagggaaaaacgaatggtttatgtgaaaaagaaatgattgttgtgattctttcagtgaaataacttttcaa 17513970  T
Q  130 attgactgattaagccattatac-aattggtagtggtttgatagtaccaaatttat 184  Q
    ||||||||||||||  ||||||| ||||||  |||||||| |||||||| ||||||    
T  17513971 attgactgattaagtgattatacaaattgggggtggtttgttagtaccagatttat 17514026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 22 - 209
Target Start/End: Complemental strand, 29156329 - 29156138
Alignment:
Q  22 aacggtgtcatttggatttgtcacttattcgttgtgggaaaggg-aaaacgaatggtttatgt-aaaaagaaatgattgttgtgattcttcctatgaaat 119  Q
    |||||| || |||| ||||||||||||| ||||||||||||||| |||||||||||||||| | |||||||||||||||||||||||||| | |||||||    
T  29156329 aacggtatcgtttgaatttgtcacttatccgttgtgggaaaggggaaaacgaatggtttatatgaaaaagaaatgattgttgtgattctttcaatgaaat 29156230  T
Q  120 agcttttcaaattgactgattaagccattatac-aattggtagtggtttgatagtaccaaatttatg-tcagaaagaataactagagtctag 209  Q
    | ||||| ||||||||||||||||  ||||||| |||| |  ||||||||||||||||| ||||||| ||||| || ||||||| |||||||    
T  29156229 aactttttaaattgactgattaagtgattatacaaattaggggtggtttgatagtaccagatttatgttcagataggataactatagtctag 29156138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 26 - 188
Target Start/End: Complemental strand, 5829518 - 5829355
Alignment:
Q  26 gtgtcatttggatttgtcacttattcgttgtgggaaagggaaaa-cgaatggtttatgt-aaaaagaaatgattgttgtgattcttcctatgaaatagct 123  Q
    ||||| |||||||||||||| ||| |||||| |||||||||||| |||||||||||||| ||||||||||||||||||||||||||   |||||||||||    
T  5829518 gtgtcgtttggatttgtcacctatccgttgtaggaaagggaaaaacgaatggtttatgtgaaaaagaaatgattgttgtgattcttttaatgaaatagct 5829419  T
Q  124 tttcaaattgactgattaagccattatac-aattggtagtggtttgatagtaccaaatttatgtca 188  Q
    ||  ||||||||||||||||  ||||||| |||||    |||||||||||||||| ||||||||||    
T  5829418 tt--aaattgactgattaagtgattatacaaattgaggttggtttgatagtaccagatttatgtca 5829355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 22 - 186
Target Start/End: Original strand, 10591198 - 10591365
Alignment:
Q  22 aacggtgtcatttggatttgtcacttattcgttgtgggaaagggaa-aacgaatggtttatgt-aaaaagaaatgattgttgtgattcttcctatgaaat 119  Q
    ||||||| | ||||||||  | |||||| ||||||||||||||| | |||||||| ||| ||| ||||| |||||||||||||||||||| | |||||||    
T  10591198 aacggtgccgtttggattgattacttatccgttgtgggaaaggggataacgaatgatttttgtgaaaaataaatgattgttgtgattctttcaatgaaat 10591297  T
Q  120 agcttttcaaattgactgattaagccattatac-aattggtagtggtttgatagtaccaaatttatgt 186  Q
    | ||||||||||| ||||||||||  ||||||| ||||||  ||||||||||||||||| ||||||||    
T  10591298 aacttttcaaattaactgattaagtgattatacaaattgggggtggtttgatagtaccatatttatgt 10591365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 63 - 209
Target Start/End: Complemental strand, 138241 - 138092
Alignment:
Q  63 gggaaaacgaatggtttatgta-aaaagaaatgattgttgtgattcttcctatgaaatagcttttcaaattgactgattaagccattatac-aattggta 160  Q
    ||||||||||||||||||||   |||| |||| |||||||||||| || | |||||||||||||||||||||||||||||||  ||||||| ||||| |     
T  138241 gggaaaacgaatggtttatgcggaaaaaaaataattgttgtgattatttcaatgaaatagcttttcaaattgactgattaagtgattatacaaattgatg 138142  T
Q  161 gtggtttgatagtaccaaatttatgtcag-aaagaataactagagtctag 209  Q
    |||||||||||| | |||||||||||| | |||| | |||||||||||||    
T  138141 gtggtttgatagcatcaaatttatgtccgaaaagtagaactagagtctag 138092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 22 - 154
Target Start/End: Complemental strand, 13474770 - 13474635
Alignment:
Q  22 aacggtgtcatttggatttgtcacttattcgttgtgggaaaggg-aaaacgaatggtttatgtaaa--aagaaatgattgttgtgattcttcctatgaaa 118  Q
    ||||||||| |||||||||||||||  |  ||||||| |||||| |||||||||||||||||  ||  || |||||||||||||||||||| | ||||||    
T  13474770 aacggtgtcgtttggatttgtcactcctctgttgtggaaaagggtaaaacgaatggtttatgcgaagaaaaaaatgattgttgtgattctttcaatgaaa 13474671  T
Q  119 tagcttttcaaattgactgattaagccattatacaa 154  Q
     | ||||||||||||||||||||||  |||||||||    
T  13474670 caacttttcaaattgactgattaagtgattatacaa 13474635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 26 - 209
Target Start/End: Complemental strand, 27351484 - 27351297
Alignment:
Q  26 gtgtcatttggatttgtcacttattcgttgtgggaaagg-gaaaacgaatggtttatgtaaaaa-gaaatgattgttgtgattcttcctatgaaatagct 123  Q
    ||||| ||| |||||||||||  | |||||||||||||  ||||| || ||||||||| ||||| |||||||||   || |||||| | |||||||| ||    
T  27351484 gtgtcgtttagatttgtcactcctccgttgtgggaaagaagaaaatgactggtttatgcaaaaaagaaatgatttaggttattctttcaatgaaataact 27351385  T
Q  124 tttcaaattgactgattaagccattatac-aattggtagtggtttgatagtaccaaatttatg-tcagaaagaataactagagtctag 209  Q
    || |||||||||||||||||   |||||| ||||||  |||||||||||| |||||||||||| |||||||| | |||||||||||||    
T  27351384 ttccaaattgactgattaagtggttatacaaattggaggtggtttgatagcaccaaatttatgttcagaaaggagaactagagtctag 27351297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 22 - 154
Target Start/End: Original strand, 19099238 - 19099373
Alignment:
Q  22 aacggtgtcatttggatttgtcacttattcgttgtgggaaaggga--aaacgaatggtttatgtaaa--aagaaatgattgttgtgattcttcctatgaa 117  Q
    ||||||||| |||||||||||||||| |  ||||||| |||| ||  ||||||||||||||||  ||  || |||||||||||||||||||| | |||||    
T  19099238 aacggtgtcgtttggatttgtcacttctcggttgtgg-aaagtgataaaacgaatggtttatgcgaagaaaaaaatgattgttgtgattctttcaatgaa 19099336  T
Q  118 atagcttttcaaattgactgattaagccattatacaa 154  Q
    ||||||||| ||||||||||||||||  |||||||||    
T  19099337 atagctttttaaattgactgattaagtgattatacaa 19099373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 22 - 154
Target Start/End: Complemental strand, 40956452 - 40956318
Alignment:
Q  22 aacggtgtcatttggatttgtcacttattcgttgtgggaaaggg-aaaacgaatggtttatgtaaaaa-gaaatgattgttgtgattcttcctatgaaat 119  Q
    ||||| ||| |||||||||||||||  | | ||||||||||||| |||||||||||| |||| ||||| |||||||||||||||||||||   |||||||    
T  40956452 aacggcgtcgtttggatttgtcactcttccattgtgggaaaggggaaaacgaatggtgtatgcaaaaaagaaatgattgttgtgattcttttaatgaaat 40956353  T
Q  120 agcttttcaaattgactgattaagccattatacaa 154  Q
    || |||||||||| | ||||||||  |||||||||    
T  40956352 agtttttcaaattaaatgattaagtgattatacaa 40956318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 58 - 209
Target Start/End: Complemental strand, 10033649 - 10033494
Alignment:
Q  58 ggaaagggaaaacgaatggtttatgt-aaaaagaaatgattgttgtgattcttcctatgaaatagcttttcaaattgac-tgattaagccattatac-aa 154  Q
    |||||||||||||||||||||||||  |||||||||| ||| ||||||||||| | || |||||||||||||||||||| | | | ||  ||||||| ||    
T  10033649 ggaaagggaaaacgaatggtttatgcgaaaaagaaataattattgtgattctttcaataaaatagcttttcaaattgactttaatcagtgattatacaaa 10033550  T
Q  155 ttggtagtggtttgatagtaccaaatttatgt-cagaaagaataactagagtctag 209  Q
    ||| | | |||||||||| | ||||||||||| ||||||| | |||||||||||||    
T  10033549 ttgatgggggtttgatagcatcaaatttatgtacagaaagtagaactagagtctag 10033494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 22 - 154
Target Start/End: Complemental strand, 33281813 - 33281679
Alignment:
Q  22 aacggtgtcatttggatttgtcacttattcgttgtgggaaagggaaaa-cgaatggtttatgt-aaaaagaaatgattgttgtgattcttcctatgaaat 119  Q
    |||| |||| |||| |||||||||| || |||||||||||| |||||| | |||||||||||  |||||||||||||| ||| ||||||| | |||||||    
T  33281813 aacgatgtcgtttgaatttgtcactcatccgttgtgggaaaaggaaaagcaaatggtttatgcgaaaaagaaatgattattgggattctttcaatgaaat 33281714  T
Q  120 agcttttcaaattgactgattaagccattatacaa 154  Q
    | ||||| ||||||||| ||||||  |||||||||    
T  33281713 aactttttaaattgactaattaagtgattatacaa 33281679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 22 - 106
Target Start/End: Original strand, 8379368 - 8379453
Alignment:
Q  22 aacggtgtcatttggatttgtcacttattcgttgtgggaaagggaaaacgaatggtttatg-taaaaagaaatgattgttgtgatt 106  Q
    ||||||||| ||||||||||||||| || ||||||||||| |||||||||||||| |||||  |||||||||| ||||||||||||    
T  8379368 aacggtgtcgtttggatttgtcactcatccgttgtgggaaggggaaaacgaatggattatgcgaaaaagaaattattgttgtgatt 8379453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 63 - 154
Target Start/End: Original strand, 7390367 - 7390459
Alignment:
Q  63 gggaaaacgaatggtttatgt-aaaaagaaatgattgttgtgattcttcctatgaaatagcttttcaaattgactgattaagccattatacaa 154  Q
    ||||||||||||||||||||  |||||||||| ||||| ||||||||| | |||||||| ||||| ||||||||||||||||  |||||||||    
T  7390367 gggaaaacgaatggtttatgcgaaaaagaaataattgtcgtgattctttcgatgaaataactttttaaattgactgattaagtgattatacaa 7390459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 22 - 154
Target Start/End: Complemental strand, 13656350 - 13656215
Alignment:
Q  22 aacggtgtcatttggatttgtcacttattcgttgtgggaaaggg-aaaacgaatggtttatgtaaa--aagaaatgattgttgtgattcttcctatgaaa 118  Q
    ||||||||| |||| ||||| ||||  |  ||||| | |||||| |||||||||||||||||  ||  || |||||||||||||||||||| | ||||||    
T  13656350 aacggtgtcgtttgaatttgacactcctctgttgtagaaaagggtaaaacgaatggtttatgcgaagaaaaaaatgattgttgtgattctttcaatgaaa 13656251  T
Q  119 tagcttttcaaattgactgattaagccattatacaa 154  Q
    || ||||||||||||||||||||||  |||||||||    
T  13656250 taacttttcaaattgactgattaagtgattatacaa 13656215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 27 - 209
Target Start/End: Complemental strand, 40779324 - 40779140
Alignment:
Q  27 tgtcatttggatttgtcacttattcgttgtgggaaagggaaaacgaatggtttat--gtaaaaagaaatgattgttgtgattcttcctatgaaatagctt 124  Q
    |||| ||| |||||||||||  | | |||||||||||| ||||||||||||||||  | |||||||||||||||||||||||| | | ||| ||||| ||    
T  40779324 tgtcgtttcgatttgtcactcctccattgtgggaaagg-aaaacgaatggtttatacgaaaaaagaaatgattgttgtgattcct-caatggaatagttt 40779227  T
Q  125 ttcaaattgactgattaagccattatac-aattggtagtggtttgatagtaccaaatttatg-tcagaaagaataactagagtctag 209  Q
    |||||||||||| ||||| | ||||||| ||||||   | ||||||||  | |||||||||| |||||||| | ||||||| |||||    
T  40779226 ttcaaattgacttattaaacgattatacaaattggggatagtttgataacatcaaatttatgttcagaaaggagaactagactctag 40779140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 26 - 154
Target Start/End: Complemental strand, 12661445 - 12661314
Alignment:
Q  26 gtgtcatttggatttgtcacttattcgttgtgggaaaggg-aaaacgaatggtttatgtaaa--aagaaatgattgttgtgattcttcctatgaaatagc 122  Q
    ||||| |||||||||||||||  |  ||||||| |||||| |||||||||||||||||  ||  || |||  ||||||||||||||| | ||||||||||    
T  12661445 gtgtcgtttggatttgtcactcctctgttgtggaaaagggtaaaacgaatggtttatgcgaagaaaaaaaatattgttgtgattctttcaatgaaatagc 12661346  T
Q  123 ttttcaaattgactgattaagccattatacaa 154  Q
    ||| ||||||||||| |||||  |||||||||    
T  12661345 tttccaaattgactggttaagtgattatacaa 12661314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 22 - 154
Target Start/End: Complemental strand, 13424004 - 13423869
Alignment:
Q  22 aacggtgtcatttggatttgtcacttattcgttgtgggaaaggg-aaaacgaatggtttatgtaaa--aagaaatgattgttgtgattcttcctatgaaa 118  Q
    ||||||||| ||| |||||||||||  |   |||||| |||||| |||||||||||||||||  ||  || |||||||||||||||||||| | ||||||    
T  13424004 aacggtgtcgtttagatttgtcactcctctattgtggaaaagggtaaaacgaatggtttatgcgaagaaaaaaatgattgttgtgattctttcaatgaaa 13423905  T
Q  119 tagcttttcaaattgactgattaagccattatacaa 154  Q
    |||||||  ||||||| ||||||||  |||||||||    
T  13423904 tagctttctaaattgattgattaagtgattatacaa 13423869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 72 - 143
Target Start/End: Complemental strand, 18873545 - 18873473
Alignment:
Q  72 aatggtttatgt-aaaaagaaatgattgttgtgattcttcctatgaaatagcttttcaaattgactgattaag 143  Q
    |||||||||||  |||||||||| ||||||||||||||| | ||||||||||||||||||||| |||||||||    
T  18873545 aatggtttatgcgaaaaagaaataattgttgtgattctttcaatgaaatagcttttcaaattggctgattaag 18873473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 22 - 209
Target Start/End: Original strand, 26377697 - 26377890
Alignment:
Q  22 aacggtgtcatttggatttgtcacttattcgttgtgggaaaggg-aaaacgaatggtttatgtaaa---aagaaatgattgttgtgattcttcctatgaa 117  Q
    ||||||||| |||||||||||||||  |  ||||||  ||| || |||||||||||||||||  ||   || |||||||||||||||||||| | |||||    
T  26377697 aacggtgtcgtttggatttgtcactcctcagttgtgaaaaaaggtaaaacgaatggtttatgcgaaggaaaaaaatgattgttgtgattctttcaatgaa 26377796  T
Q  118 atagcttttcaaattgactgattaagccattatac-aattggtagtggtttgatagtaccaaatttatgt-cagaaagaataactagagtctag 209  Q
    ||||||| ||| ||||||||| ||||  ||||||| |||| |  |||||||||||| | |  |||||||| || |||| | |||||||||||||    
T  26377797 atagcttctcacattgactgaataagtgattatacaaattaggggtggtttgataggatctgatttatgtacaaaaaggagaactagagtctag 26377890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 63 - 143
Target Start/End: Complemental strand, 17325942 - 17325860
Alignment:
Q  63 gggaaaacgaatggtttatgt-aaaaagaaatgattgttgtgattcttcctatgaaatag-cttttcaaattgactgattaag 143  Q
    |||||| |||||||||||||  |||||||||| ||||||||||||||| | |||||||||  |||||||||||||||||||||    
T  17325942 gggaaagcgaatggtttatgcgaaaaagaaataattgttgtgattctttcaatgaaatagttttttcaaattgactgattaag 17325860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 52 - 154
Target Start/End: Complemental strand, 931484 - 931385
Alignment:
Q  52 gttgtgggaaagg-gaaaacgaatggtttatgt-aaaaagaaatgattgttgtgattcttcctatgaaatagcttttcaaattgactgattaagccatta 149  Q
    ||||||||||||| ||||||||||||||||||  |||||||||||||| ||||||||||| |     |||||||||  ||||||||||||||||  ||||    
T  931484 gttgtgggaaaggagaaaacgaatggtttatgcgaaaaagaaatgattattgtgattctttc-----aatagctttctaaattgactgattaagtgatta 931390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 187
Target Start/End: Complemental strand, 16515599 - 16515495
Alignment:
Q  84 aaaaagaaatgattgttgtgattcttcctatgaaatagcttttcaaattgactgattaagccatta-tacaattggtagtggtttgatagtaccaaattt 182  Q
    |||||||||| ||||||||||||||| | || |||||  |||||||||||| ||||||||  |||| || ||||| | ||| ||| |||| | |||||||    
T  16515599 aaaaagaaataattgttgtgattctttcaataaaataatttttcaaattgattgattaagtgattattaaaattgatggtgttttaatagcatcaaattt 16515500  T
Q  183 atgtc 187  Q
    |||||    
T  16515499 atgtc 16515495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 111; Significance: 4e-56; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 26 - 187
Target Start/End: Complemental strand, 55134344 - 55134179
Alignment:
Q  26 gtgtcatttggatttgtcacttattcgttgtgggaaa-gggaaaacgaatggtttatgtaaaaa--gaaatgattgttgtgattcttcctatgaaatagc 122  Q
    ||||||||||||||| | |||||| ||||| |||||| ||||||||||||| ||||||||||||  ||||||||||||||||||||| ||||||||||||    
T  55134344 gtgtcatttggatttattacttatccgttgcgggaaaagggaaaacgaatgatttatgtaaaaaaagaaatgattgttgtgattctttctatgaaatagc 55134245  T
Q  123 ttttcaaattgactgattaagccattata-caattggtagtggtttgatagtaccaaatttatgtc 187  Q
    ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  55134244 ttttcaaattgactgattaagtcattataccaattggtagtggtttgatagtaccaaatttatgtc 55134179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 22 - 187
Target Start/End: Original strand, 45172570 - 45172737
Alignment:
Q  22 aacggtgtcatttggatttgtcacttattcgttgtgggaaaggg-aaaacgaatggtttatgt-aaaaagaaatgattgttgtgattcttcctatgaaat 119  Q
    |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| ||| | |||||||||||||||||||||||||| | |||||||    
T  45172570 aacggtgtcatttggatttgtcacttatccgttgtgggaaaggggaaaacgaatggtctatatgaaaaagaaatgattgttgtgattctttccatgaaat 45172669  T
Q  120 agcttttcaaattgactgattaagccattatacaattggtagtggtttgatagtaccaaatttatgtc 187  Q
    ||||||||||||||||||||||||  ||||||||| |    ||||||||||||||||| |||||||||    
T  45172670 agcttttcaaattgactgattaagtgattatacaaattagggtggtttgatagtaccagatttatgtc 45172737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 39 - 209
Target Start/End: Original strand, 21791490 - 21791663
Alignment:
Q  39 ttgtcacttattcgttgtgggaaagggaaaacgaatggtttatgt-aaaaagaaatgattgttgtgattcttcctatgaaatagcttttcaaattgactg 137  Q
    |||||||| |||||| ||||||||||| |||| |||||||||||  |||||||||||||||||||||||||| | |||||||| ||||||||||||||||    
T  21791490 ttgtcactcattcgtcgtgggaaaggggaaacaaatggtttatgcgaaaaagaaatgattgttgtgattctttcaatgaaataacttttcaaattgactg 21791589  T
Q  138 attaagccattataca-attggtagtggtttgatagtaccaaatttatg-tcagaaagaataactagagtctag 209  Q
    ||||||  |||||||| ||||   |||||||||| | | |||||||||| |||||||| | |||||||||||||    
T  21791590 attaagtgattatacacattgaaggtggtttgatggcatcaaatttatgttcagaaaggagaactagagtctag 21791663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 22 - 209
Target Start/End: Complemental strand, 5545468 - 5545277
Alignment:
Q  22 aacggtgtcatttggatttgtcacttattcgttgtgggaaaggg-aaaacgaatggtttatgt-aaaaagaaatgattgttgtgattcttcctatgaaat 119  Q
    ||||||||| |||| ||||||||||  | ||||||| ||| ||| |||||||||||||||||  ||||| ||||||||||||||||||||   |||||||    
T  5545468 aacggtgtcgtttgaatttgtcactcctccgttgtgagaagggggaaaacgaatggtttatgcgaaaaataaatgattgttgtgattcttttaatgaaat 5545369  T
Q  120 agcttttcaaattgactgattaagccattatac-aattggtagtggtttgatagtaccaaatttatgt-cagaaagaataactagagtctag 209  Q
    |||||| ||||||||| |||||||  ||||||| ||||||| |||||||||| | | ||||||||||| |||| |||| || ||||||||||    
T  5545368 agctttccaaattgaccgattaagtgattatacaaattggtggtggtttgatggcatcaaatttatgtccagacagaagaattagagtctag 5545277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 58 - 209
Target Start/End: Original strand, 35653941 - 35654096
Alignment:
Q  58 ggaaagggaaaa-cgaatggtttatgt-aaaaagaaatgattgttgtgattcttcctatgaaatagcttttcaaattgactgattaagccattatac-aa 154  Q
    |||||||||||| ||||| |||||||  |||||||||| ||||||||||||||| | |||||||||||||||||||||| ||||||||  ||||||| ||    
T  35653941 ggaaagggaaaaacgaatagtttatgcgaaaaagaaataattgttgtgattctttcaatgaaatagcttttcaaattgattgattaagtgattatacaaa 35654040  T
Q  155 ttggtagtggtttgatagtaccaaatttatgt-cagaaagaataactagagtctag 209  Q
    ||| | |||||||||||| | || |||||||| ||||||| | |||||||||||||    
T  35654041 ttgatggtggtttgatagcatcatatttatgtccagaaagtagaactagagtctag 35654096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 22 - 154
Target Start/End: Complemental strand, 19661519 - 19661384
Alignment:
Q  22 aacggtgtcatttggatttgtcacttattcgttgtgggaaaggg-aaaacgaatggtttatgtaaa--aagaaatgattgttgtgattcttcctatgaaa 118  Q
    ||||||||| |||||||||||||||  || ||||||| |||||| ||||||||||||||||| |||  || ||| |||||||||| ||||| | ||||||    
T  19661519 aacggtgtcgtttggatttgtcactcctttgttgtggaaaagggtaaaacgaatggtttatgcaaagaaaaaaaggattgttgtgtttctttcaatgaaa 19661420  T
Q  119 tagcttttcaaattgactgattaagccattatacaa 154  Q
    ||||||| |||||||||||||||||  |||||||||    
T  19661419 tagctttccaaattgactgattaagtgattatacaa 19661384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 36 - 209
Target Start/End: Complemental strand, 34982349 - 34982172
Alignment:
Q  36 gatttgtcacttattcgttgtgggaaaggg-aaaacgaatggtttatgt-aaaaagaaatgattgttgtgattcttcctatgaaatagcttttcaaattg 133  Q
    ||||||||| ||||  |||||||||||||| ||||| |||| ||||| | |||||||||| ||||||||||||||| | | ||||||| ||||| |||||    
T  34982349 gatttgtcatttatctgttgtgggaaaggggaaaacaaatgatttatatgaaaaagaaataattgttgtgattctttcaacgaaatagtttttccaattg 34982250  T
Q  134 actgattaagccattatac-aattggtagtggtttgatagtaccaaatttatgt-cagaaagaataactagagtctag 209  Q
    ||||||||||  ||||||| ||||||   ||||||| |||||||| |||||||| |||| |||| ||||| |||||||    
T  34982249 actgattaagtgattatacaaattggggatggtttgttagtaccagatttatgtccagatagaaaaactaaagtctag 34982172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 22 - 154
Target Start/End: Complemental strand, 41038390 - 41038255
Alignment:
Q  22 aacggtgtcatttggatttgtcacttattcgttgtgggaaaggg-aaaacgaatggtttatgtaaa--aagaaatgattgttgtgattcttcctatgaaa 118  Q
    ||||||||| |||||||||||||||  |  ||||||| |||||| |||||||||||||||||  ||  || |||||||||||||||||||| | ||||||    
T  41038390 aacggtgtcgtttggatttgtcactcctctgttgtggaaaagggtaaaacgaatggtttatgcgaagaaaaaaatgattgttgtgattctttcaatgaaa 41038291  T
Q  119 tagcttttcaaattgactgattaagccattatacaa 154  Q
    ||| ||| |||||||||||||||||  |||||||||    
T  41038290 tagttttccaaattgactgattaagtgattatacaa 41038255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 32 - 209
Target Start/End: Original strand, 23426100 - 23426282
Alignment:
Q  32 tttggatttgtcacttattcgttgtgggaaaggg-aaaacgaatggtttatgtaaa--aagaaatgattgttgtgattcttcctatgaaatagcttttca 128  Q
    |||||||||||||||  |  ||||||| |||||| |||||||||||||||||  ||  || |||||||||||||||||||| | ||||||||||||| ||    
T  23426100 tttggatttgtcactcctctgttgtggaaaagggtaaaacgaatggtttatgcgaagaaaaaaatgattgttgtgattctttcaatgaaatagctttcca 23426199  T
Q  129 aattgactgattaagccattatac-aattggtagtggtttgatagtaccaaatttatgt-cagaaagaataactagagtctag 209  Q
    |||||||||||||||  ||||||| |||| |  |||||||||||| | |  |||||||| || |||| | |||||||||||||    
T  23426200 aattgactgattaagtgattatacaaattagaggtggtttgataggatccgatttatgtacaaaaaggagaactagagtctag 23426282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 23 - 186
Target Start/End: Original strand, 10575450 - 10575615
Alignment:
Q  23 acggtgtcatttggatttgtcacttattcgttgtgggaaaggg-aaaacgaatggtttatgt-aaaaagaaatgattgttgtgattcttcctatgaaata 120  Q
    ||||||||||| ||||| ||||||  | ||| ||||||||||| |||||||||||||||||  ||||||||||||||||||||||| || | ||||||||    
T  10575450 acggtgtcattcggatt-gtcactcctccgtcgtgggaaaggggaaaacgaatggtttatgcgaaaaagaaatgattgttgtgattatttcaatgaaata 10575548  T
Q  121 gcttttcaaattgactgattaagccattatacaa-ttggtagtggtttgatagtaccaaatttatgt 186  Q
     ||||  ||||||||||||||||  ||||||||| |||   |||||||||||| |  ||||||||||    
T  10575549 actttctaaattgactgattaagtgattatacaagttgagggtggtttgatagcataaaatttatgt 10575615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 26 - 209
Target Start/End: Original strand, 32130718 - 32130906
Alignment:
Q  26 gtgtcatttggatttgtcacttattcgttgtgggaaaggg-aaaacgaatggtttatgtaaa--aagaaatgattgttgtgattcttcctatgaaatagc 122  Q
    ||||| |||| ||||||||||  |  ||||||| |||||| |||||||||||||||||  ||  || |||||||||||||||||||| | |||||||||     
T  32130718 gtgtcgtttgaatttgtcactcctctgttgtggaaaagggtaaaacgaatggtttatgcgaagaaaaaaatgattgttgtgattctttcaatgaaatagt 32130817  T
Q  123 ttttcaaattgactgattaagccattatac-aattggtagtggtttgatagtaccaaatttatgt-cagaaagaataactagagtctag 209  Q
    |||||||||||||||||||||  ||||||| |||| |  |||||||||||| | |  |||||||| || |||||| |||||| ||||||    
T  32130818 ttttcaaattgactgattaagtgattatacaaattaggggtggtttgataggatccgatttatgtacaaaaagaagaactagtgtctag 32130906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 22 - 154
Target Start/End: Complemental strand, 53011852 - 53011717
Alignment:
Q  22 aacggtgtcatttggatttgtcacttattcgttgtgggaaaggg-aaaacgaatggtttatgtaaa--aagaaatgattgttgtgattcttcctatgaaa 118  Q
    ||||||||| |||||||||||||||  |  ||||||| |||||| |||| ||||||||||||  ||  || ||||||||||||||||||||   ||||||    
T  53011852 aacggtgtcgtttggatttgtcactcctctgttgtggaaaagggtaaaatgaatggtttatgcgaagaaaaaaatgattgttgtgattcttttaatgaaa 53011753  T
Q  119 tagcttttcaaattgactgattaagccattatacaa 154  Q
    ||||||| |||||||||||||||||  |||||||||    
T  53011752 tagctttccaaattgactgattaagtgattatacaa 53011717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 63 - 187
Target Start/End: Original strand, 43154755 - 43154881
Alignment:
Q  63 gggaaaacgaatggtttatgt-aaaaagaaatgattgttgtgattcttcctatgaaatagcttttcaaattgactgattaagccattatac-aattggta 160  Q
    ||||||||||||| ||||||  ||||| |||| |||||||||||||||   |||||||| ||||| ||||||||||||||||  ||||||| ||||| |     
T  43154755 gggaaaacgaatgatttatgcgaaaaataaataattgttgtgattcttttaatgaaataactttttaaattgactgattaagtgattatacaaattgatg 43154854  T
Q  161 gtggtttgatagtaccaaatttatgtc 187  Q
    |||||||||||| | ||||||||||||    
T  43154855 gtggtttgatagcatcaaatttatgtc 43154881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 22 - 143
Target Start/End: Original strand, 11681666 - 11681790
Alignment:
Q  22 aacggtgtcatttggatttgtcacttattcgttgtgggaaaggg-aaaacgaatggtttat--gtaaaaagaaatgattgttgtgattcttcctatgaaa 118  Q
    ||||||||  ||||||||||||||| ||  ||||||| |||||| |||||| |||||||||  | | ||| |||||||||||||||||||| | ||||||    
T  11681666 aacggtgttgtttggatttgtcactcatctgttgtggaaaagggtaaaacggatggtttattcgaagaaaaaaatgattgttgtgattctttcaatgaaa 11681765  T
Q  119 tagcttttcaaattgactgattaag 143  Q
    || |||| |||||||||||||||||    
T  11681766 taactttccaaattgactgattaag 11681790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 22 - 143
Target Start/End: Original strand, 11689945 - 11690069
Alignment:
Q  22 aacggtgtcatttggatttgtcacttattcgttgtgggaaaggg-aaaacgaatggtttat--gtaaaaagaaatgattgttgtgattcttcctatgaaa 118  Q
    ||||||||  ||||||||||||||| ||  ||||||| |||||| |||||| |||||||||  | | ||| |||||||||||||||||||| | ||||||    
T  11689945 aacggtgttgtttggatttgtcactcatctgttgtggaaaagggtaaaacggatggtttattcgaagaaaaaaatgattgttgtgattctttcaatgaaa 11690044  T
Q  119 tagcttttcaaattgactgattaag 143  Q
    || |||| |||||||||||||||||    
T  11690045 taactttccaaattgactgattaag 11690069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 66 - 209
Target Start/End: Complemental strand, 22423780 - 22423632
Alignment:
Q  66 aaaacgaatggtttatgt---aaaaagaaatgattgttgtgattcttcctatgaaatagcttttcaaattgactgattaagccattatac-aattggtag 161  Q
    |||||||||| |||||||   ||||| |||| |||||| |||||||| | || |||||| |||||||||||| ||||||||  || |||| ||||| | |    
T  22423780 aaaacgaatgatttatgtggaaaaaataaataattgttttgattctttcaataaaatagtttttcaaattgattgattaagtgatcatacaaattgatgg 22423681  T
Q  162 tggtttgatagtaccaaatttatgt-cagaaagaataactagagtctag 209  Q
    ||||||||||| | ||||||||||| ||||||| | |||||||||||||    
T  22423680 tggtttgatagcatcaaatttatgtccagaaagtagaactagagtctag 22423632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 85 - 209
Target Start/End: Complemental strand, 24449200 - 24449072
Alignment:
Q  85 aaaagaaatgattgttgtgattcttcctatgaaatagcttttcaaattgactgattaagccattatacaattgg---tagtggtttgatagtaccaaatt 181  Q
    ||||||||| ||||||||| ||||| ||| ||||||| ||||||||||||| |||||||  ||||||||| | |   |||||||||||||| | ||||||    
T  24449200 aaaagaaataattgttgtggttctttctaagaaatagtttttcaaattgaccgattaagtgattatacaaattgatatagtggtttgatagcatcaaatt 24449101  T
Q  182 tatgt-cagaaagaataactagagtctag 209  Q
    ||| | ||||||| | |||||||||||||    
T  24449100 tatatccagaaagtagaactagagtctag 24449072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 22 - 154
Target Start/End: Complemental strand, 44478180 - 44478044
Alignment:
Q  22 aacggtgtcatttggatttgtcacttattcgttgtgggaaaggg-aaaacgaatggtttatgtaaa---aagaaatgattgttgtgattcttcctatgaa 117  Q
    ||||||||| |||| ||||||||||  |  ||||||| |||||| ||||||||| |||||||  ||   || |||||||||||||||||||| | |||||    
T  44478180 aacggtgtcgtttgaatttgtcactcctctgttgtggaaaagggtaaaacgaatagtttatgcgaagaaaaaaaatgattgttgtgattctttcaatgaa 44478081  T
Q  118 atagcttttcaaattgactgattaagccattatacaa 154  Q
    |||||||| |||||||||||||| ||  |||||||||    
T  44478080 atagctttccaaattgactgatttagtgattatacaa 44478044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 24 - 143
Target Start/End: Complemental strand, 23256731 - 23256610
Alignment:
Q  24 cggtgtcatttggatttgtcacttattcgttgtgggaaaggg-aaaacgaatggtttatgtaaa-aagaaatgattgttgtgattcttcctatgaaatag 121  Q
    ||||||| |||| ||||||||||  |  ||||||| |||||| |||||||||||||||||  || || |||||||||||||||||||| |  ||||||||    
T  23256731 cggtgtcgtttgaatttgtcactcctctgttgtggaaaagggtaaaacgaatggtttatgggaagaaaaaatgattgttgtgattctttcattgaaatag 23256632  T
Q  122 cttttcaaattgactgattaag 143  Q
    ||||  ||||||||||||||||    
T  23256631 ctttctaaattgactgattaag 23256610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 22 - 186
Target Start/End: Complemental strand, 27632538 - 27632370
Alignment:
Q  22 aacggtgtcatttggatttgtcacttattcgttgtgggaaagggaaaa-cgaatggtttatgtaaa--aagaaatgattgttgtgattcttcctatgaaa 118  Q
    ||||||||  |||||||||||||||  |  ||||||| |||||| ||| |||||| ||||||  ||  || ||||||||| |||||||||| | |||||     
T  27632538 aacggtgttgtttggatttgtcactactctgttgtggaaaagggtaaagcgaatgatttatgcgaagaaaaaaatgattgatgtgattctttcaatgaag 27632439  T
Q  119 tagcttttcaaattgactgattaagccattatac-aattggtagtggtttgatagtaccaaatttatgt 186  Q
    |||||||||||||||||| ||||||  ||||||| |||| |  |||||||||||| | |||||||||||    
T  27632438 tagcttttcaaattgactaattaagtgattatacaaattaggggtggtttgataggatcaaatttatgt 27632370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 22 - 154
Target Start/End: Original strand, 28463512 - 28463647
Alignment:
Q  22 aacggtgtcatttggatttgtcacttattcgttgtgggaaaggg-aaaacgaatggtttatgtaaa--aagaaatgattgttgtgattcttcctatgaaa 118  Q
    ||||||||| |||| ||||||||||  |   |||||| |||||| |||||||||||||||||  ||  || ||||||||||||||||| || | ||||||    
T  28463512 aacggtgtcgtttgaatttgtcactcctctattgtggaaaagggcaaaacgaatggtttatgcgaagaaaaaaatgattgttgtgattttttcaatgaaa 28463611  T
Q  119 tagcttttcaaattgactgattaagccattatacaa 154  Q
    ||||||||||| |||| ||||||||  |||||||||    
T  28463612 tagcttttcaacttgattgattaagtgattatacaa 28463647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 22 - 142
Target Start/End: Complemental strand, 29580020 - 29579897
Alignment:
Q  22 aacggtgtcatttggatttgtcacttattcgttgtgggaaaggg-aaaacgaatggtttatgtaaa--aagaaatgattgttgtgattcttcctatgaaa 118  Q
    |||||| ||||||||||||||||||  |  ||||||| ||| || ||||||||| |||||||  ||  || |||||||||||||||||||| |  |||||    
T  29580020 aacggtatcatttggatttgtcactactctgttgtggaaaatggtaaaacgaattgtttatgcgaagaaaaaaatgattgttgtgattctttcattgaaa 29579921  T
Q  119 tagcttttcaaattgactgattaa 142  Q
    ||||||||||| ||||||||||||    
T  29579920 tagcttttcaatttgactgattaa 29579897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 26 - 120
Target Start/End: Original strand, 51066353 - 51066449
Alignment:
Q  26 gtgtcatttggatttgtcacttattcgttgtgggaaagggaaaacgaatggtttatgt---aaaaagaaatgattgttgtgattcttcctatgaaata 120  Q
    |||||||||||||||||||||  |||||| |||||| |||||||| |||||||||||    ||||| |||||||||||||||||||| | ||||||||    
T  51066353 gtgtcatttggatttgtcactccttcgttttgggaa-gggaaaacaaatggtttatgcggaaaaaaaaaatgattgttgtgattctttcaatgaaata 51066449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 186
Target Start/End: Original strand, 29221545 - 29221713
Alignment:
Q  22 aacggtgtcatttggatttgtcacttattcgttgtgggaaaggg-aaaacgaatggtttatgtaaa--aagaaatgattgttgtgattcttcctatgaaa 118  Q
    ||||||||| |||  ||||||||||  |  ||||||| |||||| |||||||||||||||||  ||  || |||||||||||||||||| | | ||||||    
T  29221545 aacggtgtcgtttaaatttgtcactcctctgttgtggaaaagggtaaaacgaatggtttatgcgaagaaaaaaatgattgttgtgattccttcaatgaaa 29221644  T
Q  119 tagcttttcaaattgactgattaagccattatac-aattggtagtggtttgatagtaccaaatttatgt 186  Q
    |||  || ||||||||| | |||||  ||||||| ||||   ||||||||||||| | || ||||||||    
T  29221645 tagacttccaaattgaccgtttaagtgattatacaaattaagagtggtttgataggatcagatttatgt 29221713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 106; Significance: 3e-53; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 17 - 187
Target Start/End: Original strand, 34523871 - 34524044
Alignment:
Q  17 ttaaaaacggtgtcatttggatttgtcacttattcgttgtgggaaaggg-aaaacgaatggtttatgt-aaaaagaaatgattgttgtgattcttcctat 114  Q
    |||| ||||||||| |||||||||||||||||| ||||||||||||||| |||||||||||||||| | |||||||||||||||||||||||||| | ||    
T  34523871 ttaataacggtgtcgtttggatttgtcacttatccgttgtgggaaaggggaaaacgaatggtttatatgaaaaagaaatgattgttgtgattctttcaat 34523970  T
Q  115 gaaatagcttttcaaattgactgattaagccattatac-aattggtagtggtttgatagtaccaaatttatgtc 187  Q
    |||||||||||||||||||||||||||||  ||||||| ||||||  ||||||||||||||||| |||||||||    
T  34523971 gaaatagcttttcaaattgactgattaagtgattatacaaattgggggtggtttgatagtaccagatttatgtc 34524044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 26 - 185
Target Start/End: Original strand, 39697867 - 39698029
Alignment:
Q  26 gtgtcatttggatttgtcacttattcgttgtgggaaagg-gaaaacgaatggtttatgtaaaaa-gaaatgattgttgtgattcttcctatgaaatagct 123  Q
    |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||| | |||||||||||    
T  39697867 gtgtcatttggatttgtcacttatccgttgtgggaaaggcgaaaacgaatggtttatgtaaaaaagaaataattgttgtgattctttcaatgaaatagct 39697966  T
Q  124 tttcaaattgactgattaagccattatac-aattggtagtggtttgatagtaccaaatttatg 185  Q
    ||||||||||||| |||||   || |||| ||||||| |||||||||||||||||||||||||    
T  39697967 tttcaaattgactaattaaatgatcatacaaattggtggtggtttgatagtaccaaatttatg 39698029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 22 - 186
Target Start/End: Complemental strand, 12531698 - 12531531
Alignment:
Q  22 aacggtgtcatttggatttgtcacttattcgttgtgggaaaggg-aaaacgaatggtttatgt-aaaaagaaatgattgttgtgattcttcctatgaaat 119  Q
    ||||| ||| |||| |||||||| |||| ||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||| | |||||||    
T  12531698 aacggcgtcgtttgaatttgtcatttatccgttgtgggaaaggggaaaacaaatggtttatgtgaaaaagaaatgattgttgtgattctttcaatgaaat 12531599  T
Q  120 agcttttcaaattgactgattaagccattatac-aattggtagtggtttgatagtaccaaatttatgt 186  Q
    || |||| ||||||||||||||||  ||||||| ||||||  || |||||||||||| | ||||||||    
T  12531598 agatttttaaattgactgattaagtgattatacaaattggaggtagtttgatagtacaagatttatgt 12531531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 22 - 186
Target Start/End: Original strand, 23567199 - 23567366
Alignment:
Q  22 aacggtgtcatttggatttgtcacttattcgttgtgggaaagggaaaa-cgaatggtttatgt-aaaaagaaatgattgttgtgattcttcctatgaaat 119  Q
    ||||| ||| ||||||||||||| |||| |||||||||||| |||||| |||||||||||||| |||||||||| ||||||||||| ||| | |||||||    
T  23567199 aacggcgtcgtttggatttgtcatttatccgttgtgggaaaaggaaaaacgaatggtttatgtgaaaaagaaatcattgttgtgatactttcaatgaaat 23567298  T
Q  120 agcttttcaaattgactgattaagccattatac-aattggtagtggtttgatagtaccaaatttatgt 186  Q
    ||  ||||||||||||||||||||  ||||||| ||||||  |||||||||||||| || ||||||||    
T  23567299 agtatttcaaattgactgattaagtgattatacaaattgggggtggtttgatagtagcagatttatgt 23567366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 22 - 209
Target Start/End: Original strand, 32098103 - 32098294
Alignment:
Q  22 aacggtgtcatttggatttgtcacttattcgttgtgggaaaggg-aaaacgaatggtttatgtaaaaa-gaaatgattgttgtgattcttcctatgaaat 119  Q
    ||||||||| |||||||| ||||||  |  |||||||||| ||| ||||||||||||||||| ||||| ||||| ||||||||||||||| | |||||||    
T  32098103 aacggtgtcgtttggattcgtcactcctctgttgtgggaatggggaaaacgaatggtttatgcaaaaaagaaataattgttgtgattctttcaatgaaat 32098202  T
Q  120 agcttttcaaattgactgattaagccattatac-aattggtagtggtttgatagtaccaaatttatgt-cagaaagaataactagagtctag 209  Q
    || ||| |||||||||||||||||  || |||| ||||   ||||||||||||| | ||||||||||| || |||| |||||||||||||||    
T  32098203 agttttccaaattgactgattaagtgatcatacaaattaagagtggtttgatagcatcaaatttatgtccaaaaaggataactagagtctag 32098294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 26 - 208
Target Start/End: Original strand, 5869253 - 5869435
Alignment:
Q  26 gtgtcatttggatttgtcacttattcgttgtgggaaagggaaaacgaatggtttatgta-aaaagaaatgattgttgtgattcttcctatgaaatagctt 124  Q
    ||||| |||| ||||||||||  ||| ||||||||| |||||||| |||||||||||   |||| |||||||||||||||||||| | ||||||||||||    
T  5869253 gtgtcgtttgaatttgtcactccttcattgtgggaa-gggaaaacaaatggtttatgcggaaaaaaaatgattgttgtgattctttcaatgaaatagctt 5869351  T
Q  125 ttcaaattgactgattaagccattatacaattggtagtggtttgatagtaccaaatttatgt-cagaaagaataactagagtcta 208  Q
    |||||||||||||||||||  ||| || || | || |||||||||||||| | ||||||||| ||||||| | ||||| ||||||    
T  5869352 ttcaaattgactgattaagtgattttaaaaattgtggtggtttgatagtatc-aatttatgtacagaaaggagaactaaagtcta 5869435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 22 - 154
Target Start/End: Original strand, 43926247 - 43926382
Alignment:
Q  22 aacggtgtcatttggatttgtcacttattcgttgtgggaaagggaaaa-cgaatggtttatgtaaa--aagaaatgattgttgtgattcttcctatgaaa 118  Q
    ||||||||| |||||||||||||||  |   |||||| |||||| ||| |||||||||||||  ||  || |||||||||||||||||||| | ||||||    
T  43926247 aacggtgtcgtttggatttgtcactcctctattgtggaaaagggtaaagcgaatggtttatgcgaagaaaaaaatgattgttgtgattctttcaatgaaa 43926346  T
Q  119 tagcttttcaaattgactgattaagccattatacaa 154  Q
    |||||||||||||||||||||||||  |||||||||    
T  43926347 tagcttttcaaattgactgattaagtaattatacaa 43926382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 66 - 209
Target Start/End: Original strand, 3628717 - 3628863
Alignment:
Q  66 aaaacgaatggtttatgt-aaaaagaaatgattgttgtgattcttcctatgaaatagcttttcaaattgactgattaagccattatac-aattggtagtg 163  Q
    |||||||||||||||||  |||||||||| ||||||||||||||| | |||||||| |||||||||||||||||||| |  ||||||| ||||  | |||    
T  3628717 aaaacgaatggtttatgcgaaaaagaaataattgttgtgattctttcaatgaaataacttttcaaattgactgattatgtgattatacaaattaatggtg 3628816  T
Q  164 gtttgatagtaccaaatttatg-tcagaaagaataactagagtctag 209  Q
    ||||||||| | ||||||||||  ||||| | | |||||||||||||    
T  3628817 gtttgatagcatcaaatttatgaccagaatgtagaactagagtctag 3628863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 22 - 154
Target Start/End: Original strand, 18420533 - 18420668
Alignment:
Q  22 aacggtgtcatttggatttgtcacttattcgttgtgggaaaggg-aaaacgaatggtttatgtaaa--aagaaatgattgttgtgattcttcctatgaaa 118  Q
    ||||||||| |||||||||||||||  |  ||||||  ||| || |||||||||||||||||  ||  || |||||||||||||||||||| | ||||||    
T  18420533 aacggtgtcgtttggatttgtcactcctctgttgtgaaaaaaggtaaaacgaatggtttatgcgaagaaaaaaatgattgttgtgattctttcaatgaaa 18420632  T
Q  119 tagcttttcaaattgactgattaagccattatacaa 154  Q
     ||||||||||||||||||||||||  |||||||||    
T  18420633 cagcttttcaaattgactgattaagtgattatacaa 18420668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 23 - 153
Target Start/End: Original strand, 30915214 - 30915346
Alignment:
Q  23 acggtgtcatttggatttgtcacttattcgttgtgggaaagggaaaacgaatggtttatgt-aaaaagaaatgattgttgtgattcttccta-tgaaata 120  Q
    ||||||| |||||||||| ||| || |  |||||||||| ||| |||| |||  ||||||  ||||||||||||||||||||||||||  || |||||||    
T  30915214 acggtgttatttggatttatcatttctctgttgtgggaatggggaaacaaattatttatgcgaaaaagaaatgattgttgtgattctttttaatgaaata 30915313  T
Q  121 gcttttcaaattgactgattaagccattataca 153  Q
    |||||||||||||||||||||||  ||||||||    
T  30915314 gcttttcaaattgactgattaagtgattataca 30915346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 27 - 209
Target Start/End: Original strand, 43967999 - 43968186
Alignment:
Q  27 tgtcatttggatttgtcacttattcgttgtgggaaaggg-aaaacgaatggtttatgtaaa--aagaaatgattgttgtgattcttcctatgaaatagct 123  Q
    |||| |||||||||||||||  |  ||||||| |||| | |||||||||||||||||  ||  || |||||||||||||||||||| | |||||||| ||    
T  43967999 tgtcgtttggatttgtcactcctctgttgtggaaaagagtaaaacgaatggtttatgcgaagaaaaaaatgattgttgtgattctttcaatgaaataact 43968098  T
Q  124 tttcaaattgactgattaagccattatac-aattggtagtggtttgatagtaccaaatttatgt-cagaaagaataactagagtctag 209  Q
    ||||||||||| ||||||||  ||||||| |||| | ||||||||||||| | |  |||||||| || |||| | |||||||||||||    
T  43968099 tttcaaattgattgattaagtgattatacaaattaggagtggtttgataggatccgatttatgtacaaaaaggagaactagagtctag 43968186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 90 - 186
Target Start/End: Complemental strand, 3471669 - 3471572
Alignment:
Q  90 aaatgattgttgtgattcttcctatgaaatagcttttcaaattgactgattaagccattatac-aattggtagtggtttgatagtaccaaatttatgt 186  Q
    |||||||||||||||||||| | |||||||||||||||||||||||||||||||  ||||||| |||| |  |||||||||||| | || ||||||||    
T  3471669 aaatgattgttgtgattctttcaatgaaatagcttttcaaattgactgattaagtgattatacaaattaggggtggtttgatagaatcacatttatgt 3471572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 22 - 154
Target Start/End: Complemental strand, 7858225 - 7858090
Alignment:
Q  22 aacggtgtcatttggatttgtcacttattcgttgtgggaaaggg-aaaacgaatggtttatgtaaa--aagaaatgattgttgtgattcttcctatgaaa 118  Q
    ||||||||||||||||||| |||||  |  ||||||| |||||| |||||||||||||||||  ||  || ||||||||||||||||||||   |||||     
T  7858225 aacggtgtcatttggatttttcactcctctgttgtggaaaagggtaaaacgaatggtttatgcgaagaaaaaaatgattgttgtgattctttaaatgaat 7858126  T
Q  119 tagcttttcaaattgactgattaagccattatacaa 154  Q
    || |||| |||||||||||||||||  |||||||||    
T  7858125 taactttccaaattgactgattaagtgattatacaa 7858090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 22 - 142
Target Start/End: Complemental strand, 13585439 - 13585316
Alignment:
Q  22 aacggtgtcatttggatttgtcacttattcgttgtgggaaaggg-aaaacgaatggtttatgtaaa--aagaaatgattgttgtgattcttcctatgaaa 118  Q
    ||||| ||| |||||| ||||||||  |  ||||||| |||||| |||||||||||||||||  ||  || |||||||||||||||||||| | ||||||    
T  13585439 aacggcgtcgtttggacttgtcactcctctgttgtggaaaagggtaaaacgaatggtttatgcgaagaaaaaaatgattgttgtgattctttcaatgaaa 13585340  T
Q  119 tagcttttcaaattgactgattaa 142  Q
    ||||||| ||||||||||||||||    
T  13585339 tagctttccaaattgactgattaa 13585316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 22 - 171
Target Start/End: Complemental strand, 18112257 - 18112103
Alignment:
Q  22 aacggtgtcatttggatttgtcacttattcgttgtgggaaaggg-aaaacgaatggtttatgtaaa---aagaaatgattgttgtgattcttcctatgaa 117  Q
    ||||||||| |||||||||||||||  |   |||||| |||||| |||||||||||||||||  ||   || |||||||||||||||||||| | || ||    
T  18112257 aacggtgtcgtttggatttgtcactcctctattgtggaaaagggtaaaacgaatggtttatgcgaagaaaaaaaatgattgttgtgattctttcaataaa 18112158  T
Q  118 atagcttttcaaattgactgattaagccattatac-aattggtagtggtttgata 171  Q
    |||| ||| |||||||||||||||||  ||||||| |||| | ||||||||||||    
T  18112157 atagttttccaaattgactgattaagtgattatacaaattaggagtggtttgata 18112103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 85 - 209
Target Start/End: Complemental strand, 35875000 - 35874872
Alignment:
Q  85 aaaagaaatgattgttgtgattcttcctatgaaatagcttttcaaattgactgattaagccattatacaattgg---tagtggtttgatagtaccaaatt 181  Q
    ||||||||| ||||||||| ||||| ||| ||||||| ||||||||||||| |||||||  ||||||||| | |   |||||||||||||| | ||||||    
T  35875000 aaaagaaataattgttgtggttctttctaagaaatagtttttcaaattgaccgattaagtgattatacaaattgatatagtggtttgatagcatcaaatt 35874901  T
Q  182 tatgt-cagaaagaataactagagtctag 209  Q
    ||| | ||||||| | |||||||||||||    
T  35874900 tatatccagaaagtagaactagagtctag 35874872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 32 - 143
Target Start/End: Original strand, 44664980 - 44665094
Alignment:
Q  32 tttggatttgtcacttattcgttgtgggaaaggg-aaaacgaatggtttatgtaaa--aagaaatgattgttgtgattcttcctatgaaatagcttttca 128  Q
    |||||||||||||||  |  ||||||| |||||| |||||||||||||||||  ||  || |||||||||||||||||||| | |||||||| |||| ||    
T  44664980 tttggatttgtcactcctctgttgtggaaaagggtaaaacgaatggtttatgcgaagaaaaaaatgattgttgtgattctttcaatgaaataactttcca 44665079  T
Q  129 aattgactgattaag 143  Q
    ||| |||||||||||    
T  44665080 aatagactgattaag 44665094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 52 - 154
Target Start/End: Complemental strand, 1004170 - 1004063
Alignment:
Q  52 gttgtgggaaaggg-aaaacgaatggtttatg---taaaaagaaatgattgttgtgattcttcctatgaaatagctttt-caaattgactgattaagcca 146  Q
    ||||||| |||||| |||||||||||||||||   | |||| |||||||||||||||||||| | ||||||||  |||| |||||||||||||||||  |    
T  1004170 gttgtggaaaagggtaaaacgaatggtttatgcgatgaaaaaaaatgattgttgtgattctttcaatgaaataattttttcaaattgactgattaagtga 1004071  T
Q  147 ttatacaa 154  Q
    ||||||||    
T  1004070 ttatacaa 1004063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 51 - 134
Target Start/End: Complemental strand, 33452901 - 33452816
Alignment:
Q  51 cgttgtgggaaagggaaaacgaatggtttatgt-aaaaagaaatgattgttgtgattcttccta-tgaaatagcttttcaaattga 134  Q
    ||||||||||||||| |||| |||| ||||||  ||||||||||||||||||||||||||  || | ||||| |||||||||||||    
T  33452901 cgttgtgggaaaggggaaacaaatgatttatgcgaaaaagaaatgattgttgtgattctttttattaaaataacttttcaaattga 33452816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 60 - 186
Target Start/End: Complemental strand, 27074675 - 27074546
Alignment:
Q  60 aaagggaaaacgaatggtttatgtaaa--aagaaatgattgttgtgattcttcctatgaaatagcttttcaaattgactgattaagccattatac-aatt 156  Q
    ||||| ||||| |||||||||||  ||  || ||||||||||||||||| || | |||||||||  ||| ||||||||||||||||  ||||||| ||||    
T  27074675 aaaggtaaaacaaatggtttatgcgaagaaaaaaatgattgttgtgattttttcaatgaaatagacttttaaattgactgattaagtgattatacaaatt 27074576  T
Q  157 ggtagtggtttgatagtaccaaatttatgt 186  Q
     |  |||||||||||| | || ||||||||    
T  27074575 aggggtggtttgataggatcagatttatgt 27074546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 141
Target Start/End: Complemental strand, 42777884 - 42777763
Alignment:
Q  22 aacggtgtcatttggatttgtcacttattcgttgtgggaaagg-gaaaacgaatggtttatgta-aaaagaaatgattgttgtgattcttcctatgaaat 119  Q
    ||||||||  ||||| |||||||||  | |||||||||||| | ||||||||||||| ||||   |||| ||||||||||||||||||||   || ||||    
T  42777884 aacggtgtggtttggttttgtcactcctccgttgtgggaaatgagaaaacgaatggtatatgcggaaaaaaaatgattgttgtgattcttttaattaaat 42777785  T
Q  120 agcttttcaaattgactgatta 141  Q
    ||||||  ||||||||| ||||    
T  42777784 agctttctaaattgactaatta 42777763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 100 - 172
Target Start/End: Original strand, 42951774 - 42951847
Alignment:
Q  100 tgtgattcttcctatgaaatagcttttcaaattgactgattaagccattatac-aattggtagtggtttgatag 172  Q
    |||||||||| | || ||||| ||||||||||||||||||||||  ||||||| |||| | |||||||||||||    
T  42951774 tgtgattctttcaataaaataacttttcaaattgactgattaagtgattatacaaattaggagtggtttgatag 42951847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 142
Target Start/End: Complemental strand, 29372454 - 29372374
Alignment:
Q  63 gggaaaacgaatggtttatgt-aaaaagaaatgattgttgtgattcttcctatgaaatagcttttcaaattgactgattaa 142  Q
    ||||||| ||||||||||||  ||||| ||||||||||||| |||||| | ||  |||| |||| ||||||||||||||||    
T  29372454 gggaaaatgaatggtttatgcgaaaaataaatgattgttgtcattctttcaattgaataactttccaaattgactgattaa 29372374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 97; Significance: 8e-48; HSPs: 33)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 22 - 187
Target Start/End: Original strand, 18172865 - 18173033
Alignment:
Q  22 aacggtgtcatttggatttgtcacttattcgttgtgggaaaggg-aaaacgaatggtttatgt-aaaaagaaatgattgttgtgattcttcctatgaaat 119  Q
    ||||| ||| |||||||||||||||||| ||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| | |||||||    
T  18172865 aacggcgtcgtttggatttgtcacttatccgttgtgggaaaggggaaaacgaatggtttatgtgaaaaagaaatgattgttgtgattctttcgatgaaat 18172964  T
Q  120 agcttttcaaattgactgattaagccattatac-aattggtagtggtttgatagtaccaaatttatgtc 187  Q
    ||||||||||||||| ||||||||  ||||||| |||| |  ||||||||||||||||| |||||||||    
T  18172965 agcttttcaaattgagtgattaagtgattatacaaattaggggtggtttgatagtaccagatttatgtc 18173033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 22 - 187
Target Start/End: Original strand, 38985634 - 38985802
Alignment:
Q  22 aacggtgtcatttggatttgtcacttattcgttgtgggaaaggg-aaaacgaatggtttatgt-aaaaagaaatgattgttgtgattcttcctatgaaat 119  Q
    ||||| ||| |||||||||||||||||| |||||||| |||||| ||||| |||| ||||||| |||||||||||||||||||||||||| | |||||||    
T  38985634 aacggcgtcttttggatttgtcacttatccgttgtggaaaaggggaaaacaaatgttttatgtgaaaaagaaatgattgttgtgattctttcaatgaaat 38985733  T
Q  120 agcttttcaaattgactgattaagccattatac-aattggtagtggtttgatagtaccaaatttatgtc 187  Q
    ||||||||||||||| |||||||   ||||||| ||||||  |||||||||||||||||||||||||||    
T  38985734 agcttttcaaattgattgattaaatgattatacaaattggaggtggtttgatagtaccaaatttatgtc 38985802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 22 - 141
Target Start/End: Original strand, 17117570 - 17117691
Alignment:
Q  22 aacggtgtcatttggatttgtcacttattcgttgtgggaaaggg-aaaacgaatggtttatgt-aaaaagaaatgattgttgtgattcttcctatgaaat 119  Q
    ||||||||| |||||||||||||||||| ||||||||||||||| |||||||||||||||| | |||||||||||||||||||||||||| | |||||||    
T  17117570 aacggtgtcgtttggatttgtcacttatccgttgtgggaaaggggaaaacgaatggtttatatgaaaaagaaatgattgttgtgattctttcaatgaaat 17117669  T
Q  120 agcttttcaaattgactgatta 141  Q
    ||||||||||||||||||||||    
T  17117670 agcttttcaaattgactgatta 17117691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 32 - 187
Target Start/End: Complemental strand, 15457630 - 15457471
Alignment:
Q  32 tttggatttgtcacttattcgttgtgggaaaggg-aaaacgaatggtttatgt--aaaaagaaatgattgttgtgattcttcctatgaaatagcttttca 128  Q
    |||||||||||||||| | ||||||||||||||| |||||||||||||| |||  ||||| |||| ||||||||||||||| | || |||||||||||||    
T  15457630 tttggatttgtcacttgtccgttgtgggaaaggggaaaacgaatggtttgtgtgaaaaaaaaaattattgttgtgattctttcaataaaatagcttttca 15457531  T
Q  129 aattgactgattaagccattatac-aattggtagtggtttgatagtaccaaatttatgtc 187  Q
    |||||||||||||||  ||||||| ||||||  || |||||||||||||| |||||||||    
T  15457530 aattgactgattaagtgattatacaaattgggggtagtttgatagtaccagatttatgtc 15457471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 22 - 209
Target Start/End: Original strand, 21747155 - 21747346
Alignment:
Q  22 aacggtgtcatttggatttgtcacttattcgttgtgggaaagggaaaa-cgaatggtttatgt-aaaaagaaatgattgttgtgattcttcctatgaaat 119  Q
    ||||| ||| |||| |||| ||||||||  |||||||||||||||||| |||||||||||||| |||||||||| ||||||||||||||| | |||| ||    
T  21747155 aacggcgtcgtttgaatttctcacttatctgttgtgggaaagggaaaaacgaatggtttatgtgaaaaagaaattattgttgtgattctttcaatgacat 21747254  T
Q  120 agcttttcaaattgactgattaagccattatac-aattggtagtggtttgatagtaccaaatttatg-tcagaaagaataactagagtctag 209  Q
    ||  ||| ||||||||||||||||  ||||||| ||||||  ||||||||||||||||| ||||||| ||||| |||| ||||| |||||||    
T  21747255 agtattttaaattgactgattaagtgattatacaaattgggggtggtttgatagtaccagatttatgttcagatagaagaactaaagtctag 21747346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 63 - 209
Target Start/End: Complemental strand, 39081494 - 39081346
Alignment:
Q  63 gggaaaacgaatggtttatgtaaaaagaaatgattgttgtgattcttcctatgaaatagcttttcaaattgactgattaagccattatac-aattggtag 161  Q
    |||||||| |||||||||| | ||||||||| |||||||| |||||| | |||||||||||||||||||||||||||||||  ||||||| ||||| | |    
T  39081494 gggaaaactaatggtttatatgaaaagaaataattgttgtaattctttcaatgaaatagcttttcaaattgactgattaagtgattatacaaattgatgg 39081395  T
Q  162 tggtttgatagtaccaaatttatgt-cagaaagaataactagagtctag 209  Q
    ||||||||||| | ||||||||||| ||||||| | |||||||||||||    
T  39081394 tggtttgatagcatcaaatttatgtccagaaagtaaaactagagtctag 39081346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 42 - 187
Target Start/End: Original strand, 18915999 - 18916147
Alignment:
Q  42 tcacttattcgttgtgggaaagggaaaa-cgaatggtttatgt-aaaaagaaatgattgttgtgattcttcctatgaaatagcttttcaaattgactgat 139  Q
    |||||||| ||||||||||||||||||| | ||| |||||||| ||||||||||||||| |||||||||| |  ||||||||||||||||||||| ||||    
T  18915999 tcacttatccgttgtgggaaagggaaaaacaaatagtttatgtgaaaaagaaatgattgctgtgattctttcagtgaaatagcttttcaaattgattgat 18916098  T
Q  140 taagccattatac-aattggtagtggtttgatagtaccaaatttatgtc 187  Q
    ||||  ||||||| ||||||   |||||||||||||||| |||||||||    
T  18916099 taagtgattatacaaattggggatggtttgatagtaccagatttatgtc 18916147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 40 - 209
Target Start/End: Original strand, 36059848 - 36060021
Alignment:
Q  40 tgtcacttattcgttgtgggaaa-gggaaaacgaatggtttatgtaaaa-agaaatgattgttgtgattcttcctatgaaatagcttttcaaattgactg 137  Q
    ||||||| || ||| |||||||| |||||||||||||||||||| |||| |||||||||||||||| ||||| | |||||||||||||| ||||| ||||    
T  36059848 tgtcactcatacgtcgtgggaaaagggaaaacgaatggtttatgcaaaaaagaaatgattgttgtggttctttcaatgaaatagctttttaaattaactg 36059947  T
Q  138 attaagccattatac-aattggtagtggtttgatagtaccaaatttatgtc-agaaagaataactagagtctag 209  Q
    ||||||  ||||||| ||||| | |||||||||||| | ||||||| |||| | |||| | |||||||||||||    
T  36059948 attaagtgattatacaaattgatggtggtttgatagcatcaaatttttgtctaaaaagtagaactagagtctag 36060021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 22 - 209
Target Start/End: Original strand, 19367343 - 19367535
Alignment:
Q  22 aacggtgtcatttggatttgtcacttattcgttgtgggaaaggg-aaaacgaatggtttat--gtaaaaagaaatgattgttgtgattcttcctatgaaa 118  Q
    ||||||||| |||| ||||||||||     ||||||| |||||| ||||||||||||||||  | | ||| |||||||||||||||||||| | ||||||    
T  19367343 aacggtgtcgtttgaatttgtcactccactgttgtggaaaagggtaaaacgaatggtttattcgaagaaaaaaatgattgttgtgattctttcaatgaaa 19367442  T
Q  119 tagcttttcaaattgactgattaagccattatac-aattggtagtggtttgatagtaccaaatttatgt-cagaaagaataactagagtctag 209  Q
    |||||||||||||||||||||||||  ||||||| |||| |  |||||||||||| | |  |||||||| || |||| | |||||||||||||    
T  19367443 tagcttttcaaattgactgattaagtgattatacaaattaggggtggtttgatagaatccgatttatgtacaaaaaggagaactagagtctag 19367535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 40 - 143
Target Start/End: Complemental strand, 13997434 - 13997330
Alignment:
Q  40 tgtcacttattcgttgtgggaaagggaaaacgaatggtttatgt-aaaaagaaatgattgttgtgattcttcctatgaaatagcttttcaaattgactga 138  Q
    ||||||| || ||| || |||||||||||||||||||||||||  |||||||||| ||||||||||||||| | ||||||||| |||||||||||||| |    
T  13997434 tgtcactcatacgtcgtaggaaagggaaaacgaatggtttatgcgaaaaagaaataattgttgtgattctttcaatgaaatagtttttcaaattgactca 13997335  T
Q  139 ttaag 143  Q
    |||||    
T  13997334 ttaag 13997330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 22 - 154
Target Start/End: Original strand, 26151671 - 26151806
Alignment:
Q  22 aacggtgtcatttggatttgtcacttattcgttgtgggaaaggg-aaaacgaatggtttatgtaaa--aagaaatgattgttgtgattcttcctatgaaa 118  Q
    ||||||||| |||||||||||||||  |  ||||| | |||||| |||||||||||||||||  ||  || |||||||||||||||||||| | ||||||    
T  26151671 aacggtgtcgtttggatttgtcactcctctgttgtagaaaagggtaaaacgaatggtttatgcgaagaaaaaaatgattgttgtgattctttcaatgaaa 26151770  T
Q  119 tagcttttcaaattgactgattaagccattatacaa 154  Q
    ||||||| |||||||||||||||||  |||||||||    
T  26151771 tagctttccaaattgactgattaagtgattatacaa 26151806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 55 - 184
Target Start/End: Complemental strand, 38599507 - 38599376
Alignment:
Q  55 gtgggaaaggg-aaaacgaatggtttatgtaaaaagaaatgattgttgtgattcttcctatgaaatagcttttcaaattgactgattaagccattatac- 152  Q
    ||||||||||| ||||||||||||||||| ||||| |||| |||||| |||||||| | ||||||||| |||||||||||| ||||||||  |||||||     
T  38599507 gtgggaaaggggaaaacgaatggtttatgaaaaaataaataattgttttgattctttcaatgaaatagtttttcaaattgattgattaagtgattataca 38599408  T
Q  153 aattggtagtggtttgatagtaccaaatttat 184  Q
    ||||| || || |||||||| | |||||||||    
T  38599407 aattgataatgatttgatagcatcaaatttat 38599376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 22 - 154
Target Start/End: Original strand, 18676234 - 18676370
Alignment:
Q  22 aacggtgtcatttggatttgtcacttattcgttgtgggaaaggg-aaaacgaatggtttatgtaaa---aagaaatgattgttgtgattcttcctatgaa 117  Q
    ||||||||| |||| ||||||||||  |   |||||| |||||| ||||||||||||||||| |||   || |||||||||||||||||||| | |||||    
T  18676234 aacggtgtcgtttgaatttgtcactcctcttttgtggaaaagggtaaaacgaatggtttatgcaaagaaaaaaaatgattgttgtgattctttcaatgaa 18676333  T
Q  118 atagcttttcaaattgactgattaagccattatacaa 154  Q
    |||||||| |||||||||||||||||  |||||||||    
T  18676334 atagctttccaaattgactgattaagttattatacaa 18676370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 84 - 209
Target Start/End: Complemental strand, 1418984 - 1418858
Alignment:
Q  84 aaaaagaaatgattgttgtgattcttcctatgaaatagcttttcaaattgactgattaagccattatac-aattggtagtggtttgatagtaccaaattt 182  Q
    |||||||||| ||||||||||||||| | ||||||||||||| |||||||||||||||||  ||||||| ||||| | |||||||||||| | |||| ||    
T  1418984 aaaaagaaataattgttgtgattctttcaatgaaatagctttacaaattgactgattaagtgattatacaaattgatggtggtttgatagcatcaaa-tt 1418886  T
Q  183 atgtc-agaaagaataactagagtctag 209  Q
    ||||| | |||| | |||||||||||||    
T  1418885 atgtctaaaaagtagaactagagtctag 1418858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 22 - 154
Target Start/End: Original strand, 41096461 - 41096597
Alignment:
Q  22 aacggtgtcatttggatttgtcacttattcgttgtgggaaaggg-aaaacgaatggtttatgtaaa---aagaaatgattgttgtgattcttcctatgaa 117  Q
    ||||||||| |||||||||||||||  |  ||||||| |||||| ||||||||||||| |||  ||   || |||||||||||||||||||| | |||||    
T  41096461 aacggtgtcgtttggatttgtcactcctctgttgtggaaaagggtaaaacgaatggttaatgcgaagaaaaaaaatgattgttgtgattctttcaatgaa 41096560  T
Q  118 atagcttttcaaattgactgattaagccattatacaa 154  Q
    |||| ||| |||||||||||||||||  |||||||||    
T  41096561 atagttttccaaattgactgattaagtgattatacaa 41096597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 22 - 154
Target Start/End: Complemental strand, 2063945 - 2063810
Alignment:
Q  22 aacggtgtcatttggatttgtcacttattcgttgtgggaaaggg-aaaacgaatggtttatgta--aaaagaaatgattgttgtgattcttcctatgaaa 118  Q
    ||||||||| |||| ||||||||||  |  ||||||| ||| || |||||||||||||| ||    |||| |||||||||||||||||||| | ||||||    
T  2063945 aacggtgtcgtttgaatttgtcactcctctgttgtggaaaaaggtaaaacgaatggtttttgcgggaaaaaaaatgattgttgtgattctttcaatgaaa 2063846  T
Q  119 tagcttttcaaattgactgattaagccattatacaa 154  Q
    ||||||| |||||||||||||||||  |||||||||    
T  2063845 tagctttccaaattgactgattaagtgattatacaa 2063810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 22 - 154
Target Start/End: Complemental strand, 45619116 - 45618982
Alignment:
Q  22 aacggtgtcatttggatttgtcacttattcgttgtgggaaaggg-aaaacgaatggtttatgtaaa--aagaaatgattgttgtgattcttcctatgaaa 118  Q
    ||||||||| |||||||||||||||  |  ||||||| |||||| ||||| |||||||||||  ||  || |||||||||||||||||||| | ||||||    
T  45619116 aacggtgtcgtttggatttgtcactcctctgttgtggaaaagggtaaaacaaatggtttatgcgaagaaaaaaatgattgttgtgattctttcaatgaaa 45619017  T
Q  119 tagcttttcaaattgactgattaagccattatacaa 154  Q
    |||| || |||||||||||||||||  |||||||||    
T  45619016 tagc-ttccaaattgactgattaagtgattatacaa 45618982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 27 - 154
Target Start/End: Complemental strand, 4856128 - 4855998
Alignment:
Q  27 tgtcatttggatttgtcacttattcgttgtgggaaaggg-aaaacgaatggtttatgtaaa--aagaaatgattgttgtgattcttcctatgaaatagct 123  Q
    |||| |||||||||||||||  |  ||||||| |||||  |||||||||||||||||  ||  || |||||||||||||||||||| | |||||||||||    
T  4856128 tgtcgtttggatttgtcactcctctgttgtggaaaaggttaaaacgaatggtttatgcgaagaaaaaaatgattgttgtgattctttcaatgaaatagct 4856029  T
Q  124 tttcaaattgactgattaagccattatacaa 154  Q
    || |||||| ||||||||||  |||||||||    
T  4856028 ttccaaattcactgattaagtgattatacaa 4855998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 22 - 154
Target Start/End: Complemental strand, 7993773 - 7993637
Alignment:
Q  22 aacggtgtcatttggatttgtcacttattcgttgtgggaaaggg-aaaacgaatggtttatgtaaa---aagaaatgattgttgtgattcttcctatgaa 117  Q
    ||||||||| |||||||||||||||  |   |||||| |||||| |||||||||||||||||  ||   || ||| |||||||||||||||| | |||||    
T  7993773 aacggtgtcgtttggatttgtcactcctctattgtggaaaagggtaaaacgaatggtttatgcgaagaaaaaaaaagattgttgtgattctttcaatgaa 7993674  T
Q  118 atagcttttcaaattgactgattaagccattatacaa 154  Q
    |||||||| ||||||| |||||||||  |||||||||    
T  7993673 atagctttccaaattggctgattaagtgattatacaa 7993637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 22 - 209
Target Start/End: Original strand, 42411482 - 42411674
Alignment:
Q  22 aacggtgtcatttggatttgtcacttattcgttgtgggaaaggg-aaaacgaatggtttatgtaaa--aagaaatgattgttgtgattcttcctatgaaa 118  Q
    ||||||||| ||||||||| |||||  |  ||||||  |||||| |||||||||||||||||  ||  || ||||||||||||||||||||   ||||||    
T  42411482 aacggtgtcgtttggatttttcactcctctgttgtgaaaaagggtaaaacgaatggtttatgcgaagtaaaaaatgattgttgtgattctttaaatgaaa 42411581  T
Q  119 tagcttttcaaattgactgattaagccattatac-aattggtagtggtttgatagtaccaaatttatgt-cagaaagaataactagagtctag 209  Q
    ||||||| |||||||||| ||||||  ||||||| |||| |  |||||||||||| | |  |||||||| || |||| | |||||||||||||    
T  42411582 tagctttccaaattgactaattaagtgattatacaaattaggggtggtttgataggatccgatttatgtacaaaaaggagaactagagtctag 42411674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 91 - 174
Target Start/End: Complemental strand, 6530727 - 6530643
Alignment:
Q  91 aatgattgttgtgattcttcctatgaaatagcttttcaaattgactgattaagccattatac-aattggtagtggtttgatagta 174  Q
    ||||||||||||||||||| | |||||||| ||||||||||||||||||||||  ||||||| |||| |  ||||||||||||||    
T  6530727 aatgattgttgtgattctttcaatgaaataccttttcaaattgactgattaagtgattatacaaattaggggtggtttgatagta 6530643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 90 - 208
Target Start/End: Original strand, 34061851 - 34061971
Alignment:
Q  90 aaatgattgttgtgattcttcctatgaaatagcttttcaaattgactgattaagccattatac-aattggtagtggtttgatagtaccaaatttatgt-c 187  Q
    |||||||||||||||||||| | ||||||||||||| |||||||||||||||||  || |||| ||||    |||||||||||| |||| |||||||| |    
T  34061851 aaatgattgttgtgattctttcaatgaaatagctttccaaattgactgattaagtaatcatacaaattatgggtggtttgataggaccagatttatgtac 34061950  T
Q  188 agaaagaataactagagtcta 208  Q
    | |||||| ||||| ||||||    
T  34061951 aaaaagaagaactatagtcta 34061971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 26 - 171
Target Start/End: Original strand, 31273095 - 31273242
Alignment:
Q  26 gtgtcatttggatttgtcacttattcgttgtgggaaagggaaaa-cgaatggtttatgt-aaaaagaaatgattgttgtgattcttcctatgaaatagct 123  Q
    ||||| |||||||||||||||| |  |||||||||||| ||||| | |||||||||||  |||||||||||| |||| ||||||||   |||||||||      
T  31273095 gtgtcgtttggatttgtcacttttctgttgtgggaaagagaaaaacaaatggtttatgcgaaaaagaaatgaatgttatgattcttttaatgaaatagta 31273194  T
Q  124 tttcaaattgactgattaagccattatacaattggtagtggtttgata 171  Q
    || ||||||||||||||||   ||||||||| | |  |||||||||||    
T  31273195 ttccaaattgactgattaaatgattatacaaattggggtggtttgata 31273242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 65 - 154
Target Start/End: Original strand, 27302497 - 27302587
Alignment:
Q  65 gaaaacgaatggtttatgt-aaaaagaaatgattgttgtgattcttcctatgaaatagcttttcaaattgactgattaagccattatacaa 154  Q
    ||||| ||||||||||||  ||||| ||||||||||||||||||||   |||| |||||||||||||||||| |||||||  |||||||||    
T  27302497 gaaaatgaatggtttatgcgaaaaataaatgattgttgtgattcttttaatgatatagcttttcaaattgaccgattaagtgattatacaa 27302587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 60 - 154
Target Start/End: Complemental strand, 13020524 - 13020428
Alignment:
Q  60 aaagggaaaacgaatggtttatgtaaa--aagaaatgattgttgtgattcttcctatgaaatagcttttcaaattgactgattaagccattatacaa 154  Q
    ||||| |||||||||||||||||  ||  || |||| |||||||||||||||   ||||||||||||| |||||||||||||||||  |||||||||    
T  13020524 aaaggtaaaacgaatggtttatgcgaagaaaaaaattattgttgtgattctttaaatgaaatagctttccaaattgactgattaagtgattatacaa 13020428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 53 - 141
Target Start/End: Original strand, 42759711 - 42759802
Alignment:
Q  53 ttgtgggaaaggg-aaaacgaatggtttatgtaaa--aagaaatgattgttgtgattcttcctatgaaatagcttttcaaattgactgatta 141  Q
    |||||| |||||| |||||||||||||||||  ||  || |||||||||||||||||||| | |||||||| |||| |||||||||||||||    
T  42759711 ttgtggaaaagggtaaaacgaatggtttatgcgaagaaaaaaatgattgttgtgattctttcaatgaaataactttccaaattgactgatta 42759802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 27 - 209
Target Start/End: Complemental strand, 45042525 - 45042337
Alignment:
Q  27 tgtcatttggatttgtcacttattcgttgtgggaaagggaaaacgaatggtttatgtaaa--aagaaatgattgttgtgattcttcctatgaaatagctt 124  Q
    |||| |||| ||||||||||  |  ||||||| |||||| || |||||||||||||  ||  || |||||||||||||||||||| | |||||||||  |    
T  45042525 tgtcgtttgaatttgtcactcctctgttgtggaaaagggtaa-cgaatggtttatgcgaagaaaaaaatgattgttgtgattctttcaatgaaatagact 45042427  T
Q  125 tt---caaattgactgattaagccattatac-aattggtagtggtttgatagtaccaaatttatgt-cagaaagaataactagagtctag 209  Q
    ||   |||||||||||||||||  ||||||| |||| |  |||||||||||| | ||||||||||| |  |||||| |||||||||||||    
T  45042426 ttcaccaaattgactgattaagtgattatacaaattaggggtggtttgataggatcaaatttatgtacgaaaagaagaactagagtctag 45042337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 64 - 140
Target Start/End: Original strand, 1226234 - 1226312
Alignment:
Q  64 ggaaaacgaatggtttatgt-aaaaagaaatgattgttgtgattcttccta-tgaaatagcttttcaaattgactgatt 140  Q
    ||||||| |||||||||||  ||||||||||||||||||||||||||  || ||||||| |||||||||||| ||||||    
T  1226234 ggaaaacaaatggtttatgcgaaaaagaaatgattgttgtgattctttttattgaaataacttttcaaattgtctgatt 1226312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 63 - 187
Target Start/End: Original strand, 29480604 - 29480730
Alignment:
Q  63 gggaaaacgaatggtttatgt-aaaaagaaatgattgttgtgattcttcctatgaaatagcttttcaaattgactgattaagccattatac-aattggta 160  Q
    ||||| || |||||||||||  |||||||||| ||||||||||||||| | ||||||||  |||||||||||||||| ||||   |||| | ||||| |     
T  29480604 gggaagacaaatggtttatgcgaaaaagaaataattgttgtgattctttcaatgaaataatttttcaaattgactgaataagtgtttattcaaattgatg 29480703  T
Q  161 gtggtttgatagtaccaaatttatgtc 187  Q
    ||||||| |||| | ||||||||||||    
T  29480704 gtggtttaatagcatcaaatttatgtc 29480730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 141
Target Start/End: Complemental strand, 13001772 - 13001655
Alignment:
Q  26 gtgtcatttggatttgtcacttattcgttgtgggaaagg-gaaaacgaatggtttatg-taaaaagaaatgattgttgtgattcttcctatgaaatagct 123  Q
    ||||| |||||||||||||||  || ||||||||||||| |||||||||| || |||  | |||| |||||||| |||||||||||   |||||||||||    
T  13001772 gtgtcgtttggatttgtcactcctttgttgtgggaaaggagaaaacgaattgtatatactgaaaaaaaatgattattgtgattcttttaatgaaatagct 13001673  T
Q  124 tttcaaattgactgatta 141  Q
    ||  ||||||||| ||||    
T  13001672 ttataaattgactaatta 13001655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 125
Target Start/End: Complemental strand, 36481532 - 36481428
Alignment:
Q  24 cggtgtcatttggatttgtcacttattcgttgtgggaaaggg-aaaacgaatggtttatgtaaa--aagaaatgattgttgtgattcttcctatgaaata 120  Q
    ||||||| |||||||||||||||  |  ||||||| |||||| |||| ||||||||||||  ||  || |||||||||||||||||||| | ||||||||    
T  36481532 cggtgtcgtttggatttgtcactcctctgttgtggaaaagggtaaaatgaatggtttatgcgaagaaaaaaatgattgttgtgattctttcaatgaaata 36481433  T
Q  121 gcttt 125  Q
    |||||    
T  36481432 gcttt 36481428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 154
Target Start/End: Complemental strand, 25222463 - 25222328
Alignment:
Q  22 aacggtgtcatttggatttgtcacttattcgttgtgggaaaggg-aaaacgaatggtttatgtaaa--aagaaatgattgttgtgattcttcctatgaaa 118  Q
    ||||||||  |||| ||||||||||  |  ||||||  |||||| |||||||||||||||||  ||  || |||||||||||||||||||| | ||||||    
T  25222463 aacggtgttgtttgaatttgtcactcctctgttgtgaaaaagggtaaaacgaatggtttatgcgaagaaaaaaatgattgttgtgattctttcaatgaaa 25222364  T
Q  119 tagcttttcaaattgactgattaagccattatacaa 154  Q
    || ||||  ||||||||| ||||||  |||||||||    
T  25222363 taactttctaaattgactaattaagtgattatacaa 25222328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 187
Target Start/End: Original strand, 18482495 - 18482600
Alignment:
Q  84 aaaaagaaatgattgttgtgattcttcctatgaaatagcttt-tcaaattgactgattaagccattatac-aattggtagtggtttgatagtaccaaatt 181  Q
    ||||||| || |||||||| |||||| | |||||||| || | | ||||||||||||||||| ||||||| ||||||  || ||||| ||| | ||||||    
T  18482495 aaaaagacattattgttgttattctttcaatgaaataactgtgttaaattgactgattaagcgattatacaaattgggggtagtttgttagcatcaaatt 18482594  T
Q  182 tatgtc 187  Q
    ||||||    
T  18482595 tatgtc 18482600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 97; Significance: 8e-48; HSPs: 36)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 22 - 187
Target Start/End: Complemental strand, 12971545 - 12971377
Alignment:
Q  22 aacggtgtcatttggatttgtcacttattcgttgtgggaaaggg-aaaacgaatggtttatgt-aaaaagaaatgattgttgtgattcttcctatgaaat 119  Q
    ||||| ||| |||||||||||||||||| ||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| | |||||||    
T  12971545 aacggagtcgtttggatttgtcacttatccgttgtgggaaaggggaaaacgaatggtttatgtgaaaaagaaatgattgttgtgattctttcgatgaaat 12971446  T
Q  120 agcttttcaaattgactgattaagccattatac-aattggtagtggtttgatagtaccaaatttatgtc 187  Q
    ||||||||||||||||||||||||  ||||||| ||||||  ||||||||||| || || |||||||||    
T  12971445 agcttttcaaattgactgattaagtgattatacaaattgggggtggtttgataatatcagatttatgtc 12971377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 26 - 186
Target Start/End: Original strand, 27703459 - 27703621
Alignment:
Q  26 gtgtcatttggatttgtcacttattcgttgtgggaaagggaaaa-cgaatggtttatgtaaaaa-gaaatgattgttgtgattcttcctatgaaatagct 123  Q
    ||||| |||||||| ||||||  | ||| |||| |||||||||| |||||||||||||  |||| ||||||||||||||||||||| | |||||||||||    
T  27703459 gtgtcgtttggatt-gtcactcttccgtggtggaaaagggaaaaacgaatggtttatgcgaaaatgaaatgattgttgtgattctttcgatgaaatagct 27703557  T
Q  124 tttcaaattgactgattaagccattatac-aattggtagtggtttgatagtaccaaatttatgt 186  Q
    || |||||||||||||||||  ||||||| ||||||  |||||||||||| | |||||||||||    
T  27703558 ttccaaattgactgattaagtgattatacaaattgggggtggtttgatagcatcaaatttatgt 27703621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 63 - 209
Target Start/End: Original strand, 37873729 - 37873878
Alignment:
Q  63 gggaaaacgaatggtttatgta-aaaagaaatgattgttgtgattcttcctatgaaatagcttttcaaattgactgattaagccattatac-aattggta 160  Q
    |||||||||||||||||||| | ||||||||| ||||||||||||||| | |||||| || |||||||||| ||||||||||  | ||||| ||||| |     
T  37873729 gggaaaacgaatggtttatgcagaaaagaaataattgttgtgattctttcaatgaaacagtttttcaaattaactgattaagtgactatacaaattgatg 37873828  T
Q  161 gtggtttgatagtaccaaatttatgtc-agaaagaataactagagtctag 209  Q
    |||||||||||| | |||||||||||| |||||| | |||||||||||||    
T  37873829 gtggtttgatagcatcaaatttatgtctagaaagtagaactagagtctag 37873878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 22 - 154
Target Start/End: Original strand, 18127861 - 18127996
Alignment:
Q  22 aacggtgtcatttggatttgtcacttattcgttgtgggaaaggg-aaaacgaatggtttatgtaaa--aagaaatgattgttgtgattcttcctatgaaa 118  Q
    ||||||||| |||||||||||||||  || ||||||| |||||| ||||||||| |||||||  ||  || |||| ||||||||||||||| | ||||||    
T  18127861 aacggtgtcgtttggatttgtcactcctttgttgtggaaaagggtaaaacgaatagtttatgcgaagaaaaaaataattgttgtgattcttgcaatgaaa 18127960  T
Q  119 tagcttttcaaattgactgattaagccattatacaa 154  Q
    |||||||||||||||||||||||||  |||||||||    
T  18127961 tagcttttcaaattgactgattaagtgattatacaa 18127996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 22 - 154
Target Start/End: Complemental strand, 25930743 - 25930609
Alignment:
Q  22 aacggtgtcatttggatttgtcacttattcgttgtgggaaaggg-aaaacgaatggtttatgtaaa-aagaaatgattgttgtgattcttcctatgaaat 119  Q
    ||||||||| ||||||||||||||| ||  ||||||| |||||| ||||| ||||||||||  ||| || |||||||||||||||| ||| | |||||||    
T  25930743 aacggtgtcgtttggatttgtcactcatctgttgtggaaaagggtaaaacaaatggtttatccaaagaaaaaatgattgttgtgatcctttcaatgaaat 25930644  T
Q  120 agcttttcaaattgactgattaagccattatacaa 154  Q
    |||||||||| |||||||||||||  |||||||||    
T  25930643 agcttttcaagttgactgattaagtgattatacaa 25930609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 23 - 187
Target Start/End: Complemental strand, 5560622 - 5560454
Alignment:
Q  23 acggtgtcatttggatttgtcacttattcgttgtgggaaagg-gaaaacgaatggtttatgt--aaaaagaaatgattgttgtgattcttcctatgaaat 119  Q
    ||||||| ||||||||||||||||  | |||||||||||| | ||||| |||| |||||||   ||||| | |||||||||||||||||| | |||||||    
T  5560622 acggtgttatttggatttgtcactcctccgttgtgggaaaagagaaaatgaatagtttatgcggaaaaaaatatgattgttgtgattctttcaatgaaat 5560523  T
Q  120 agcttttcaaattgactgattaagccattatac-aattggtagtggtttgatagtaccaaatttatgtc 187  Q
    | ||||| ||||||||||||||||  ||||||| ||||||  |||||||| ||| |||| |||||||||    
T  5560522 aactttttaaattgactgattaagtgattatacaaattgggggtggtttggtagcaccagatttatgtc 5560454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 22 - 209
Target Start/End: Complemental strand, 10109860 - 10109668
Alignment:
Q  22 aacggtgtcatttggatttgtcacttattcgttgtgggaaaggg-aaaacgaatggtttatgtaaa--aagaaatgattgttgtgattcttcctatgaaa 118  Q
    ||||| ||| |||||||||||||||  |  ||||||| |||||| ||||||||| |||||||  ||  || |||||||||||||||||||| | ||||||    
T  10109860 aacggcgtcgtttggatttgtcactcctctgttgtggaaaagggtaaaacgaatagtttatgcgaagaaaaaaatgattgttgtgattctttcaatgaaa 10109761  T
Q  119 tagcttttcaaattgactgattaagccattatac-aattggtagtggtttgatagtaccaaatttatgt-cagaaagaataactagagtctag 209  Q
    | ||||| |||||||||||||||||  ||||||| |||| || |||||||||||| | | ||||||||| || |||| | |||||||||||||    
T  10109760 ttgctttccaaattgactgattaagtgattatacaaattagtggtggtttgataggatccaatttatgtacaaaaaggagaactagagtctag 10109668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 32 - 209
Target Start/End: Complemental strand, 50371263 - 50371082
Alignment:
Q  32 tttggatttgtcacttattcgttgtgggaaagggaaaa-cgaatggtttatgt-aaaaagaaatgattgttgtgattcttcctatgaaatagcttttcaa 129  Q
    |||||||||||||||  | ||||||||| ||||||||| | |||| ||||||  |||||||||||||||||||||||||| | |||||| || |||||||    
T  50371263 tttggatttgtcactcctccgttgtgggtaagggaaaaactaatgatttatgcgaaaaagaaatgattgttgtgattctttcaatgaaacagtttttcaa 50371164  T
Q  130 attgactgattaagccattatac-aattggtagtggtttgatagtaccaaatttatgt-cagaaagaataactagagtctag 209  Q
    ||||||||||||||  ||||||| |||||   ||| |||||||| | ||| ||||| | ||||||| | |||||||||||||    
T  50371163 attgactgattaagtgattatacaaattgagggtgatttgatagcatcaactttatatccagaaaggagaactagagtctag 50371082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 24 - 209
Target Start/End: Original strand, 44836653 - 44836837
Alignment:
Q  24 cggtgtcatttggatttgtcacttattcgttgtgggaaagggaaaa-cgaatggtttatgt-aaaaagaaatgattgttgtgattcttcctatgaaatag 121  Q
    |||||||||||||| | ||||||  | ||| ||||||||||||||| |||||||||||||  |||||||||||||    ||||||||| |  ||||||||    
T  44836653 cggtgtcatttggaat-gtcactcctacgtcgtgggaaagggaaaaacgaatggtttatgcgaaaaagaaatgat----gtgattctttcagtgaaatag 44836747  T
Q  122 cttttcaaattgactgattaagccattatac-aattggtagtggtttgatagtaccaaatttatg-tcagaaagaataactagagtctag 209  Q
     |||||||||||||||||||||  ||||||| ||||| | |||||||||||| | |||||||||| |||||||| | ||||||| |||||    
T  44836748 tttttcaaattgactgattaagtgattatacaaattgatggtggtttgatagcatcaaatttatgttcagaaagtagaactagaatctag 44836837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 22 - 154
Target Start/End: Original strand, 48722294 - 48722429
Alignment:
Q  22 aacggtgtcatttggatttgtcacttattcgttgtgggaaaggg-aaaacgaatggtttatgtaaa--aagaaatgattgttgtgattcttcctatgaaa 118  Q
    ||||||||| |||||||||||||||  |  ||||||| |||||| |||||||||||||||||  ||  || ||||||||||||||||| || | ||||||    
T  48722294 aacggtgtcgtttggatttgtcactcctctgttgtggaaaagggtaaaacgaatggtttatgcgaagaaaaaaatgattgttgtgattatttcaatgaaa 48722393  T
Q  119 tagcttttcaaattgactgattaagccattatacaa 154  Q
    ||||||| |||||||||||||||||  |||||||||    
T  48722394 tagctttccaaattgactgattaagtgattatacaa 48722429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 22 - 209
Target Start/End: Original strand, 17674280 - 17674470
Alignment:
Q  22 aacggtgtcatttggatttgtcacttattcgttgtgggaaaggg-aaaacgaatggtttatgt-aaaaagaaatgattgttgtgattcttcctatgaaat 119  Q
    |||||||||||||||| | ||||||  | ||| || |||||||| ||||| |||||||||||  |||||||||| ||||||||||||||| | |||||||    
T  17674280 aacggtgtcatttggaat-gtcactcttacgtcgtaggaaaggggaaaacaaatggtttatgcgaaaaagaaataattgttgtgattctttcaatgaaat 17674378  T
Q  120 agcttttcaaattgactgattaagccattatac-aattggtagtggtttgatagtaccaaatttatgtc-agaaagaataactagagtctag 209  Q
    || |||||||||||||||||||||  ||||| | ||||| | ||||||| |||| | ||||||||| || ||||||   |||||||||||||    
T  17674379 agtttttcaaattgactgattaagtgattattcaaattgatggtggtttaatagcatcaaatttatatctagaaagtgaaactagagtctag 17674470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 22 - 142
Target Start/End: Complemental strand, 6150862 - 6150738
Alignment:
Q  22 aacggtgtcatttggatttgtcacttattcgttgtgg--gaaagggaaaacgaatggtttatgt--aaaaagaaatgattgttgtgattcttcctatgaa 117  Q
    ||||||||| |||||||||||||||  |  |||||||   ||||| ||||||||||||||||||  | ||| || ||||||||||||||||| | |||||    
T  6150862 aacggtgtcgtttggatttgtcactcctctgttgtggaaaaaaggtaaaacgaatggtttatgtgaagaaaaaattgattgttgtgattctttcaatgaa 6150763  T
Q  118 atagcttttcaaattgactgattaa 142  Q
    |||||||||||||||||||||||||    
T  6150762 atagcttttcaaattgactgattaa 6150738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 22 - 209
Target Start/End: Complemental strand, 15441428 - 15441238
Alignment:
Q  22 aacggtgtcatttggatttgtcacttattcgttgtgggaaagggaaaacgaatggtttatgtaaaaagaaatgattgttgtgattcttcct-atgaaata 120  Q
    ||||| ||| |||||||||||||||  |  ||||||| |||||||||| ||||| |||||| |||||  ||| |||||||||||||||  | ||||||||    
T  15441428 aacggcgtcgtttggatttgtcactcttctgttgtggaaaagggaaaatgaatgatttatgcaaaaaagaattattgttgtgattctttttaatgaaata 15441329  T
Q  121 gcttttcaaattgactgattaagccattatacaattggta-gtggtttgatagtaccaaatttatgtc-agaaagaataactagagtctag 209  Q
    |||||  ||||||| ||||||||  ||||||||| | ||| |||||||||||| |  | ||||||||| |||||| | |||||||||||||    
T  15441328 gctttataaattgagtgattaagtgattatacaaattgtaggtggtttgatagcattatatttatgtctagaaaggagaactagagtctag 15441238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 63 - 209
Target Start/End: Complemental strand, 42740207 - 42740058
Alignment:
Q  63 gggaaaacgaatggtttatgt-aaaaagaaatgattgttgtgattcttcctatgaaatagcttttcaaattgactgattaagccattatac-aattggta 160  Q
    |||||||||||| |||||||  |||||||||| ||||||| ||||||| | ||||||||| |||||||||||||| ||||||  ||||||| ||||| |     
T  42740207 gggaaaacgaattgtttatgcgaaaaagaaataattgttgcgattctttcaatgaaatagtttttcaaattgactaattaagttattatacaaattgatg 42740108  T
Q  161 gtggtttgatagtaccaaatttatgt-cagaaagaataactagagtctag 209  Q
    || ||||||||| | |||| |||||| ||||||| | |||||||||||||    
T  42740107 gttgtttgatagcatcaaacttatgtccagaaagtagaactagagtctag 42740058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 22 - 154
Target Start/End: Complemental strand, 30899798 - 30899661
Alignment:
Q  22 aacggtgtcatttggatttgtcacttattcgttgtgggaaaggg-aaaacgaatggtttatgt----aaaaagaaatgattgttgtgattcttcctatga 116  Q
    ||||||||| ||||||||||||| |  |  ||||||| |||||| |||||||||||||||||     ||||| |||||||||||||||||||| | ||||    
T  30899798 aacggtgtcgtttggatttgtcattcctctgttgtggaaaagggtaaaacgaatggtttatgcgaagaaaaaaaaatgattgttgtgattctttcaatga 30899699  T
Q  117 aatagcttttcaaattgactgattaagccattatacaa 154  Q
    ||||||||| |||||||||| ||||||  |||||||||    
T  30899698 aatagctttccaaattgactaattaagtgattatacaa 30899661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 27 - 154
Target Start/End: Original strand, 33124559 - 33124689
Alignment:
Q  27 tgtcatttggatttgtcacttattcgttgtgggaaagggaa-aacgaatggtttatgtaaa--aagaaatgattgttgtgattcttcctatgaaatagct 123  Q
    |||| |||||||||||||||  |  ||||||| ||| || | |||||||||||||||| ||  || |||||||||||||||||||| | |||||||||||    
T  33124559 tgtcgtttggatttgtcactcctctgttgtggaaaatggtataacgaatggtttatgtgaagaaaaaaatgattgttgtgattctttcaatgaaatagct 33124658  T
Q  124 tttcaaattgactgattaagccattatacaa 154  Q
    ||||||||||||| ||||||  |||||||||    
T  33124659 tttcaaattgacttattaagtgattatacaa 33124689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 66 - 209
Target Start/End: Original strand, 12884107 - 12884253
Alignment:
Q  66 aaaacgaatggtttatgtaaa-aagaaatgattgttgtgattcttcctatgaaatagcttttcaaattgactgattaagccattatac-aattggtagtg 163  Q
    |||||||||||||||||  || || |||||||||||||||||||| | |||||||||||||| ||||||||||||||||  ||||||| |||| |  |||    
T  12884107 aaaacgaatggtttatgcgaagaaaaaatgattgttgtgattctttcaatgaaatagctttttaaattgactgattaagtgattatacaaattaggggtg 12884206  T
Q  164 gtttgatagtaccaaatttatgt-cagaaagaataactagagtctag 209  Q
    ||||||||| | |  |||||||| || |||| | |||||||||||||    
T  12884207 gtttgataggatccgatttatgtacaaaaaggaaaactagagtctag 12884253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 66 - 186
Target Start/End: Complemental strand, 24556900 - 24556778
Alignment:
Q  66 aaaacgaatggtttatgt-aaaaagaaatgattgttgtgattcttcctatgaaatagcttttcaaattgactgattaagccattatac-aattggtagtg 163  Q
    |||||||||||||||||  |||||||||| |||||||||||||||   ||||||||| |||||||||||||| ||||||  ||||| | ||||| | |||    
T  24556900 aaaacgaatggtttatgcgaaaaagaaataattgttgtgattctttaaatgaaatagtttttcaaattgacttattaagtgattattcaaattgatggtg 24556801  T
Q  164 gtttgatagtaccaaatttatgt 186  Q
    |||| |||| |||||||||||||    
T  24556800 gtttaatagcaccaaatttatgt 24556778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 22 - 154
Target Start/End: Complemental strand, 147 - 12
Alignment:
Q  22 aacggtgtcatttggatttgtcacttattcgttgtgggaaaggg-aaaacgaatggtttatgtaaa--aagaaatgattgttgtgattcttcctatgaaa 118  Q
    ||||||||| |||||||||||||||  |  ||||| | |||||| |||||||||||||||||  ||  || |||||||||||||||||||| | ||||||    
T  147 aacggtgtcgtttggatttgtcactcctctgttgtagaaaagggtaaaacgaatggtttatgcgaagaaaaaaatgattgttgtgattctttcaatgaaa 48  T
Q  119 tagcttttcaaattgactgattaagccattatacaa 154  Q
    |  |||| |||||||||||||||||  |||||||||    
T  47 tcactttccaaattgactgattaagtgattatacaa 12  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 22 - 154
Target Start/End: Original strand, 28885595 - 28885730
Alignment:
Q  22 aacggtgtcatttggatttgtcacttattcgttgtgggaaaggg-aaaacgaatggtttatgtaaa--aagaaatgattgttgtgattcttcctatgaaa 118  Q
    ||||||||| ||||||||||||||| ||  ||||||| ||| |  |||||||||||||||||  ||  || |||||||||||||||||||| | ||||||    
T  28885595 aacggtgtcgtttggatttgtcactcatctgttgtggaaaaagataaaacgaatggtttatgcgaagaaaaaaatgattgttgtgattcttacaatgaaa 28885694  T
Q  119 tagcttttcaaattgactgattaagccattatacaa 154  Q
    |||||||  ||||||| ||||||||  |||||||||    
T  28885695 tagctttcaaaattgattgattaagtgattatacaa 28885730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 63 - 143
Target Start/End: Original strand, 13120833 - 13120914
Alignment:
Q  63 gggaaaacgaatggtttatgt-aaaaagaaatgattgttgtgattcttcctatgaaatagcttttcaaattgactgattaag 143  Q
    ||||||| ||||||||||||  |||||||||| ||||| ||||||||| | ||||||||| |||||||||||||||||||||    
T  13120833 gggaaaatgaatggtttatgcgaaaaagaaataattgtggtgattctttcaatgaaatagtttttcaaattgactgattaag 13120914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 25 - 154
Target Start/End: Complemental strand, 50552632 - 50552500
Alignment:
Q  25 ggtgtcatttggatttgtcacttattcgttgtgggaaaggg-aaaacgaatggtttat--gtaaaaagaaatgattgttgtgattcttcctatgaaatag 121  Q
    |||||| |||||||||||||||  |  ||||||| ||| || |||| |||||||||||  | | ||| |||||||||||||||||||| | ||||||||     
T  50552632 ggtgtcgtttggatttgtcactcctatgttgtggaaaaaggtaaaatgaatggtttatacgaagaaaaaaatgattgttgtgattctttcaatgaaataa 50552533  T
Q  122 cttttcaaattgactgattaagccattatacaa 154  Q
    |||||||||||||| |||||||  |||||||||    
T  50552532 cttttcaaattgaccgattaagtgattatacaa 50552500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 22 - 136
Target Start/End: Complemental strand, 1269689 - 1269574
Alignment:
Q  22 aacggtgtcatttggatttgtcacttattcg-ttgtgggaaagg-gaaaacgaatggtttatgtaaaaagaaatgattgttgtgattcttcctatgaaat 119  Q
    ||||||||| |||||||||||||||  | || |||||||||||| ||||||||||| | ||||   ||| ||||||||||||||||||||   |||||||    
T  1269689 aacggtgtcgtttggatttgtcactcctccgcttgtgggaaaggagaaaacgaatg-tatatgcggaaaaaaatgattgttgtgattcttttaatgaaat 1269591  T
Q  120 agcttttcaaattgact 136  Q
    |||||||||||||||||    
T  1269590 agcttttcaaattgact 1269574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 22 - 142
Target Start/End: Original strand, 29208022 - 29208145
Alignment:
Q  22 aacggtgtcatttggatttgtcacttattcgttgtgggaaaggg-aaaacgaatggtttatgtaaa--aagaaatgattgttgtgattcttcctatgaaa 118  Q
    |||||||||||||||||||||||||  |   |||||| |||||| |||||||||||||||||  ||  || |||||||||||||||||||| | ||||||    
T  29208022 aacggtgtcatttggatttgtcactcctctattgtggaaaagggtaaaacgaatggtttatgcgaagaaaaaaatgattgttgtgattctttcaatgaaa 29208121  T
Q  119 tagcttttcaaattgactgattaa 142  Q
    |||  || || |||||||||||||    
T  29208122 tagacttccagattgactgattaa 29208145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 60 - 154
Target Start/End: Original strand, 30004871 - 30004966
Alignment:
Q  60 aaagggaaaacgaatggtttatgtaaa-aagaaatgattgttgtgattcttcctatgaaatagcttttcaaattgactgattaagccattatacaa 154  Q
    ||||| |||||||||||||||||  || || |||||||||||| ||||||| | |||||||||||||||||||| | ||||||||  |||||||||    
T  30004871 aaaggtaaaacgaatggtttatgggaagaacaaatgattgttgcgattctttcaatgaaatagcttttcaaattaattgattaagtgattatacaa 30004966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 26 - 143
Target Start/End: Original strand, 6333447 - 6333564
Alignment:
Q  26 gtgtcatttggatttgtcacttattcgttgtgggaaagggaaaacgaatggtttatgta-aaaagaaatgattgttgtgattcttcctatgaaatagctt 124  Q
    ||||| ||||||||  ||||| |||||||||||||| |||||| |||||||||||||   |||| ||||||||||||||||||||   || ||||| |||    
T  6333447 gtgtcgtttggattcttcactcattcgttgtgggaa-gggaaagcgaatggtttatgcggaaaaaaaatgattgttgtgattcttttaataaaataactt 6333545  T
Q  125 ttcaaattgactgattaag 143  Q
    | ||| |||||||||||||    
T  6333546 tccaatttgactgattaag 6333564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 22 - 143
Target Start/End: Original strand, 51110025 - 51110149
Alignment:
Q  22 aacggtgtcatttggatttgtcacttattcgttgtgggaaaggg-aaaacgaatggtttatgtaaaaagaaa--tgattgttgtgattcttcctatgaaa 118  Q
    |||||||||||||| ||||||||||  || ||||||| |||||  ||||| |||||||||||  || | |||  | ||||||||||||||| | ||||||    
T  51110025 aacggtgtcatttgaatttgtcactcctttgttgtggaaaaggataaaacaaatggtttatgcgaagaaaaaacttattgttgtgattctttcaatgaaa 51110124  T
Q  119 tagcttttcaaattgactgattaag 143  Q
    |||||||  ||||||||||||||||    
T  51110125 tagctttctaaattgactgattaag 51110149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 140
Target Start/End: Complemental strand, 9777552 - 9777432
Alignment:
Q  22 aacggtgtcatttggatttgtcacttattcgttgtgggaaagggaaaacgaatggtttatg-taaaaagaaatgattgttgtgattcttccta-tgaaat 119  Q
    ||||||||| ||||||||| ||| | || | || |||||||||| |||| |||||||||||  |||| | |||||||||||||||||||  || ||||||    
T  9777552 aacggtgtcgtttggatttatcattcatccattatgggaaaggggaaacaaatggtttatgagaaaaggtaatgattgttgtgattctttttattgaaat 9777453  T
Q  120 agcttttcaaattgactgatt 140  Q
    || | ||||||||||||||||    
T  9777452 agttattcaaattgactgatt 9777432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 32 - 143
Target Start/End: Original strand, 17487217 - 17487331
Alignment:
Q  32 tttggatttgtcacttattcgttgtgggaaaggg-aaaacgaatggtttatgtaaa--aagaaatgattgttgtgattcttcctatgaaatagcttttca 128  Q
    |||||||||||||||  |  ||||||| |||||  ||||||||||||||||| |||  || |||||||||||||||||||| | |||||||| |||| ||    
T  17487217 tttggatttgtcactcctctgttgtggaaaaggataaaacgaatggtttatgcaaagaaaaaaatgattgttgtgattctttcaatgaaataactttcca 17487316  T
Q  129 aattgactgattaag 143  Q
    |||||| | ||||||    
T  17487317 aattgatttattaag 17487331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 63 - 143
Target Start/End: Original strand, 22386803 - 22386885
Alignment:
Q  63 gggaaaacgaatggtttatgtaaaaagaaa--tgattgttgtgattcttcctatgaaatagcttttcaaattgactgattaag 143  Q
    |||||||| ||||||||||| ||||| ||   | ||||||||||||||| | ||||||||| |||||||||||||||||||||    
T  22386803 gggaaaacaaatggtttatgcaaaaaaaatattaattgttgtgattctttcaatgaaatagtttttcaaattgactgattaag 22386885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 25 - 153
Target Start/End: Original strand, 14084627 - 14084759
Alignment:
Q  25 ggtgtcatttggatttgtcacttattcgttgtgggaaaggg-aaaacgaatggtttatgtaaaaagaaa---tgattgttgtgattcttcctatgaaata 120  Q
    |||||| |||||||||||||||  |  |||||||  ||||| |||||||||||||||||  || | |||   ||||| ||||||||||| | ||||||||    
T  14084627 ggtgtcgtttggatttgtcactcctctgttgtggagaagggtaaaacgaatggtttatgcgaagaaaaaaattgattattgtgattctttcaatgaaata 14084726  T
Q  121 gcttttcaaattgactgattaagccattataca 153  Q
    |||||  ||||||||||||||||  ||||||||    
T  14084727 gctttctaaattgactgattaagtgattataca 14084759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 22 - 154
Target Start/End: Original strand, 20905210 - 20905346
Alignment:
Q  22 aacggtgtcatttggatttgtcacttattcgttgtgggaaaggg--aaaacgaatggtttat--gtaaaaagaaatgattgttgtgattcttcctatgaa 117  Q
    ||||||||| |||||||||||||||  |  ||||||| ||| ||  ||||||||||||||||  | | ||| |||| ||||||||||||||| | |||||    
T  20905210 aacggtgtcgtttggatttgtcactcctctgttgtggaaaaagggtaaaacgaatggtttatacgaagaaaaaaattattgttgtgattctttcaatgaa 20905309  T
Q  118 atagcttttcaaattgactgattaagccattatacaa 154  Q
    ||||  || |||||||||||| ||||  |||||||||    
T  20905310 atagacttccaaattgactgaataagtgattatacaa 20905346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 21 - 141
Target Start/End: Original strand, 26486298 - 26486419
Alignment:
Q  21 aaacggtgtcatttggatttgtcacttattcgttgtgggaaag-ggaaaacgaatggtttatgt-aaaaagaaatgattgttgtgattcttcctatgaaa 118  Q
    ||||||||||||||||| | ||||||| | ||| || |||||| ||||||||||| |||||||  |||||||||| |||||| ||||| || | ||||||    
T  26486298 aaacggtgtcatttggaat-gtcacttctacgtcgtaggaaagaggaaaacgaatagtttatgcgaaaaagaaataattgttatgattttttcaatgaaa 26486396  T
Q  119 tagcttttcaaattgactgatta 141  Q
    |||||||||| ||| | ||||||    
T  26486397 tagcttttcagattaagtgatta 26486419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 143
Target Start/End: Complemental strand, 52055691 - 52055568
Alignment:
Q  22 aacggtgtcatttggatttgtcacttattcgttgtgggaaaggg-aaaacgaatggtttatgtaaa--aagaaatgattgttgtgattcttcctatgaaa 118  Q
    ||||||||| ||| |||||||||||  | | |||||  |||||| |||||||||||||||||  ||  || || ||||||||||||||||| | ||||||    
T  52055691 aacggtgtcgtttagatttgtcactcct-ctttgtgtaaaagggtaaaacgaatggtttatgcgaaggaaaaactgattgttgtgattctttcaatgaaa 52055593  T
Q  119 tagcttttcaaattgactgattaag 143  Q
    ||||||| |||||||| ||||||||    
T  52055592 tagctttccaaattgattgattaag 52055568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 171
Target Start/End: Complemental strand, 3907545 - 3907459
Alignment:
Q  85 aaaagaaatgattgttgtgattcttcctatgaaatagcttttcaaattgactgattaagccattatacaattggtagtggtttgata 171  Q
    ||||||||| ||| || |||||||| | ||||||||  |||||||||||| |||||||   ||||||||| | | ||||||||||||    
T  3907545 aaaagaaattatttttatgattctttcaatgaaataatttttcaaattgattgattaaatgattatacaaattggagtggtttgata 3907459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 109
Target Start/End: Original strand, 31369358 - 31369418
Alignment:
Q  51 cgttgtggga-aagggaaaacgaatggtttatgtaaaa-agaaatgattgttgtgattctt 109  Q
    |||||||||| |||| |||| |||||||||||| |||| |||||||||| |||||||||||    
T  31369358 cgttgtgggataaggaaaaatgaatggtttatgcaaaaaagaaatgatttttgtgattctt 31369418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 88; Significance: 2e-42; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 26 - 187
Target Start/End: Original strand, 48626959 - 48627122
Alignment:
Q  26 gtgtcatttggatttgtcacttattcgttgtgggaaagggaaaacgaatggtttatgt-aaaaagaaatgattgttgtgattcttcctatgaaatagctt 124  Q
    |||||||||||||||||||||||| || |||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||| | ||||||||| ||    
T  48626959 gtgtcatttggatttgtcacttatccgctgtgggaatgggaaaacgaatggtttatgtgaaaaataaatgattgttgtgattctttcaatgaaatagatt 48627058  T
Q  125 ttcaaattgactgattaagccattatac-aattggtagtggtttgatagtaccaaatttatgtc 187  Q
    ||||||||||||||| |||  ||||||| ||||||  ||||| |||||||| || |||||||||    
T  48627059 ttcaaattgactgatcaagtgattatacaaattggcggtggtctgatagtatcagatttatgtc 48627122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 63 - 208
Target Start/End: Original strand, 42009229 - 42009377
Alignment:
Q  63 gggaaaacgaatggtttatgt-aaaaagaaatgattgttgtgattcttcctatgaaatagcttttcaaattgactgattaagccattatac-aattggta 160  Q
    ||||||||||||||||||||| |||||||||| ||||||||||||||| | |||||||| ||||| ||||||||||||||||  ||||||| ||||| |     
T  42009229 gggaaaacgaatggtttatgtgaaaaagaaataattgttgtgattctttcaatgaaataactttttaaattgactgattaagtgattatacaaattgatg 42009328  T
Q  161 gtggtttgatagtaccaaatttatgt-cagaaagaataactagagtcta 208  Q
    |||||||||||| | ||||||||||| ||||||| | ||||| ||||||    
T  42009329 gtggtttgatagcatcaaatttatgtccagaaagtagaactaaagtcta 42009377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 26 - 154
Target Start/End: Original strand, 51939483 - 51939615
Alignment:
Q  26 gtgtcatttggatttgtcacttattcgttgtgggaaaggg-aaaacgaatggtttatgtaaa---aagaaatgattgttgtgattcttcctatgaaatag 121  Q
    ||||| |||||||||||||||| |  ||||||| |||||| |||||||||||||||||| ||   || |||||||||||||||||||| | |||||||||    
T  51939483 gtgtcgtttggatttgtcacttctatgttgtggaaaagggtaaaacgaatggtttatgtgaagaaaaaaaatgattgttgtgattctttcaatgaaatag 51939582  T
Q  122 cttttcaaattgactgattaagccattatacaa 154  Q
    ||||||||||||||||||||||  |||||||||    
T  51939583 cttttcaaattgactgattaagtgattatacaa 51939615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 63 - 205
Target Start/End: Original strand, 36538153 - 36538298
Alignment:
Q  63 gggaaaacgaatggtttatgt-aaaaagaaatgattgttgtgattcttcctatgaaatagcttttcaaattgactgattaagccattatac-aattggta 160  Q
    ||||||||||||||||||||  |||||||||| ||||||||||||||| | ||||||||| |||||||||||||||||||||  ||||||| ||||| |     
T  36538153 gggaaaacgaatggtttatgcgaaaaagaaataattgttgtgattctttcaatgaaatagtttttcaaattgactgattaagtgattatacaaattgatg 36538252  T
Q  161 gtggtttgatagtaccaaatttatgt-cagaaagaataactagagt 205  Q
    |||||||||||| | ||| ||||||| || |||| |||||||||||    
T  36538253 gtggtttgatagcatcaagtttatgtccataaagtataactagagt 36538298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 22 - 187
Target Start/End: Original strand, 43905778 - 43905936
Alignment:
Q  22 aacggtgtcatttggatttgtcacttattcgttgtgggaaaggg-aaaacgaatggtttatgt-aaaaagaaatgattgttgtgattcttcctatgaaat 119  Q
    |||||||||||||||||||||||||||| || |||||||||||| |||| ||||||||||||| ||||||||||||||||||||          ||||||    
T  43905778 aacggtgtcatttggatttgtcacttatccgctgtgggaaagggaaaaatgaatggtttatgtgaaaaagaaatgattgttgtg----------tgaaat 43905867  T
Q  120 agcttttcaaattgactgattaagccattatac-aattggtagtggtttgatagtaccaaatttatgtc 187  Q
    | ||||||||||||||||||| ||  ||||||| |||||   || |||||||||||||| |||||||||    
T  43905868 aacttttcaaattgactgattgagtgattatacaaattgagggtagtttgatagtaccagatttatgtc 43905936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 63 - 209
Target Start/End: Complemental strand, 7767163 - 7767011
Alignment:
Q  63 gggaaaacgaatggtttatgt----aaaaagaaatgattgttgtgattcttcctatgaaatagcttttcaaattgactgattaagccattatac-aattg 157  Q
    |||||||||||| ||||||||    ||||| |||| ||||||||||||||| | |||||||||||||||||||||||||||||||  ||||||| |||||    
T  7767163 gggaaaacgaatagtttatgtgaagaaaaaaaaataattgttgtgattctttcaatgaaatagcttttcaaattgactgattaagtgattatacaaattg 7767064  T
Q  158 gtagtggtttgatagtaccaaatttatgt-cagaaagaataactagagtctag 209  Q
     | || ||||||||| | ||||||||||| ||||||| | |||| ||||||||    
T  7767063 atggttgtttgatagcatcaaatttatgtccagaaagtagaactggagtctag 7767011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 23 - 154
Target Start/End: Complemental strand, 13401599 - 13401464
Alignment:
Q  23 acggtgtcatttggatttgtcacttattcgttgtgggaaaggg-aaaacgaatggtttatgt---aaaaagaaatgattgttgtgattcttcctatgaaa 118  Q
    |||||||| |||| ||||| ||||  |  ||||||| |||||| ||||| |||||||||||    ||||| |||||||||||||||||||||| ||||||    
T  13401599 acggtgtcgtttgaatttggcactcctctgttgtggaaaagggtaaaacaaatggtttatgcgggaaaaaaaaatgattgttgtgattcttccaatgaaa 13401500  T
Q  119 tagcttttcaaattgactgattaagccattatacaa 154  Q
    |||||||||||||||||||||||||  |||||||||    
T  13401499 tagcttttcaaattgactgattaagtgattatacaa 13401464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 21 - 154
Target Start/End: Complemental strand, 18408332 - 18408196
Alignment:
Q  21 aaacggtgtcatttggatttgtcacttattcgttgtgggaaaggg-aaaacgaatggtttatgt--aaaaagaaatgattgttgtgattcttcctatgaa 117  Q
    |||||||||| |||||||||||||||  |  ||||||| |||||| ||||||||| |||||||   ||||| |||||||||||||||||||| | ||| |    
T  18408332 aaacggtgtcgtttggatttgtcactgctctgttgtggaaaagggtaaaacgaattgtttatgcgaaaaaaaaaatgattgttgtgattctttcaatgga 18408233  T
Q  118 atagcttttcaaattgactgattaagccattatacaa 154  Q
     |||||||||||||||||||||||||  |||||||||    
T  18408232 ttagcttttcaaattgactgattaagtgattatacaa 18408196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 63 - 209
Target Start/End: Original strand, 50677281 - 50677430
Alignment:
Q  63 gggaaaacgaatggtttatgt-aaaaagaaatgattgttgtgattcttcctatgaaatagcttttcaaattgactgattaagccattatac-aattggta 160  Q
    |||||||||||| |||||||  |||||||||| |||||||||||| || | ||||||||| |||||||||||||||||||||  ||||||| ||||| |     
T  50677281 gggaaaacgaattgtttatgcgaaaaagaaataattgttgtgattgtttcaatgaaatagtttttcaaattgactgattaagtgattatacaaattgatg 50677380  T
Q  161 gtggtttgatagtaccaaatttatgt-cagaaagaataactagagtctag 209  Q
    |||||||||||  | ||||||| ||| ||||||| ||||||| |||||||    
T  50677381 gtggtttgataacaacaaatttttgtccagaaagtataactaaagtctag 50677430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 58 - 187
Target Start/End: Complemental strand, 27303289 - 27303158
Alignment:
Q  58 ggaaagggaaaacgaatggtttatgt-aaaaagaaatgattgttgtgattcttcctatgaaatagcttttcaaattgactgattaagccattatac-aat 155  Q
    ||||||||||||| ||| |||||||  |||||||||| ||||||||||||||| | |||||||||||||||||||||| ||||||||  ||||||| |||    
T  27303289 ggaaagggaaaacaaatagtttatgcgaaaaagaaataattgttgtgattctttcaatgaaatagcttttcaaattgattgattaagtgattatacaaat 27303190  T
Q  156 tggtagtggtttgatagtaccaaatttatgtc 187  Q
    || | ||||||| || | | ||||||||||||    
T  27303189 tgatggtggtttcatggcatcaaatttatgtc 27303158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 22 - 172
Target Start/End: Original strand, 52655047 - 52655201
Alignment:
Q  22 aacggtgtcatttggatttgtcacttattcgttgtgggaaaggg-aaaacgaatggtttatgtaa--aaagaaatgattgttgtgattcttcctatgaaa 118  Q
    |||||| || |||| ||||||||||  |  ||||||| |||||| |||||||||||||||||  |  ||| |||||||||||||||||||| | ||||||    
T  52655047 aacggtatcgtttgaatttgtcactcctatgttgtggaaaagggtaaaacgaatggtttatgcgaggaaaaaaatgattgttgtgattctttcaatgaaa 52655146  T
Q  119 tagcttttcaaattgactgattaagccattatac-aattggtagtggtttgatag 172  Q
    ||||||| |||||||||||||||||  ||||||| |||| || ||||||||||||    
T  52655147 tagctttccaaattgactgattaagtgattatacaaattagtggtggtttgatag 52655201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 22 - 208
Target Start/End: Original strand, 25599011 - 25599201
Alignment:
Q  22 aacggtgtcatttggatttgtcacttattcgttgtgggaaaggg-aaaacgaatggtttatgtaaaaagaa-atgattgttgtgattcttcctatgaaat 119  Q
    ||||||||| |||| ||||||||||  |  ||||||| |||||| |||||||||||||||||  || | || |||||||||||||||||| | |||||||    
T  25599011 aacggtgtcgtttgaatttgtcactcctctgttgtggaaaagggtaaaacgaatggtttatgcgaagaaaacatgattgttgtgattctttcaatgaaat 25599110  T
Q  120 agcttttcaaattgactgattaagccattata-caattggtagtggtttgatagtaccaaatttatgt-cagaaagaataactagagtcta 208  Q
    || |||||||||||||||||||||  ||||||  |||| |  |||||||||||| | || |||||||| || |||| | ||||||||||||    
T  25599111 agtttttcaaattgactgattaagtgattatataaattagaggtggtttgatagaatcagatttatgtacaaaaaggagaactagagtcta 25599201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 22 - 154
Target Start/End: Complemental strand, 24252760 - 24252625
Alignment:
Q  22 aacggtgtcatttggatttgtcacttattcgttgtgggaaaggg-aaaacgaatggtttatgtaaa--aagaaatgattgttgtgattcttcctatgaaa 118  Q
    ||||| ||| ||||||||||||||| ||  ||||||| |||||| |||||||||||||||||  ||  || |||||||||||||||||||| |  |||||    
T  24252760 aacggggtcgtttggatttgtcactcatctgttgtggaaaagggtaaaacgaatggtttatgcgaagaaaaaaatgattgttgtgattcttgcactgaaa 24252661  T
Q  119 tagcttttcaaattgactgattaagccattatacaa 154  Q
    || |||| |||||||||||||||||  |||||||||    
T  24252660 taactttccaaattgactgattaagtgattatacaa 24252625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 22 - 209
Target Start/End: Original strand, 21784707 - 21784900
Alignment:
Q  22 aacggtgtcatttggatttgtcacttattcgttgtgggaaaggg-aaaacgaatggtttatgtaaa---aagaaatgattgttgtgattcttcctatgaa 117  Q
    ||||| ||| |||||||||||||||  |  ||||||| |||||| |||||||||||||||||  ||   || |||||||||||||||||||| | |||||    
T  21784707 aacggcgtcgtttggatttgtcactcctctgttgtggaaaagggtaaaacgaatggtttatgcgaagaaaaaaaatgattgttgtgattctttcaatgaa 21784806  T
Q  118 atagcttttcaaattgactgattaagccattatac-aattggtagtggtttgatagtaccaaatttatgt-cagaaagaataactagagtctag 209  Q
    |||||||| |||||| ||||||||||  ||||||| |||| |  |||||||||||| | |  |||||||| || |||| | |||||||||||||    
T  21784807 atagctttccaaattaactgattaagtgattatacaaattaggggtggtttgataggatccgatttatgtacaaaaaggagaactagagtctag 21784900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 29 - 187
Target Start/End: Original strand, 19965812 - 19965973
Alignment:
Q  29 tcatttggatttgtcacttattcgttgtgggaaagg-gaaaacgaatggtttatgtaaaaagaaatgattgtt-gtgattcttcctatgaaatagctttt 126  Q
    ||||||| |||| ||| | || |||||||||||||| ||||||||||||||||||    || ||||||||||| |||||||||   ||||||||||||||    
T  19965812 tcatttgaatttctcattcatccgttgtgggaaaggagaaaacgaatggtttatgcgggaaaaaatgattgtttgtgattcttttaatgaaatagctttt 19965911  T
Q  127 caaattgactgattaagccattatac-aattggtagtggtttgatagtaccaaatttatgtc 187  Q
    ||| || ||| ||||||  ||||||| |||||| ||||||||||||| | || |||||||||    
T  19965912 caatttaactaattaagtgattatacaaattggcagtggtttgatagcatcagatttatgtc 19965973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 66 - 154
Target Start/End: Original strand, 28132705 - 28132794
Alignment:
Q  66 aaaacgaatggtttatgtaaa-aagaaatgattgttgtgattcttcctatgaaatagcttttcaaattgactgattaagccattatacaa 154  Q
    |||||||||||||||||  || || |||||||||||||||||||| | ||||||||||||| |||||||||||||||||  |||||||||    
T  28132705 aaaacgaatggtttatgcgaagaaaaaatgattgttgtgattctttcaatgaaatagctttccaaattgactgattaagtgattatacaa 28132794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 18 - 152
Target Start/End: Complemental strand, 15987343 - 15987207
Alignment:
Q  18 taaaaacggtgtcatttggatttgtcacttattcgttgtgggaaaggg-aaaacgaatggtttatg-taaaaagaaatgattgttgtgattcttcctatg 115  Q
    |||| ||||||||||||| ||||||||||  | ||||||||||||||| |||||||||||||||||  ||||| ||||||| ||||| ||||||   |||    
T  15987343 taaacacggtgtcatttgaatttgtcactcctccgttgtgggaaagggaaaaacgaatggtttatgcgaaaaataaatgatagttgtaattcttttaatg 15987244  T
Q  116 aaatagcttttcaaattgactgattaagccattatac 152  Q
    ||||| ||||  ||||||| ||||||||  |||||||    
T  15987243 aaataactttcgaaattgaatgattaagtgattatac 15987207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 84 - 187
Target Start/End: Complemental strand, 46904817 - 46904713
Alignment:
Q  84 aaaaagaaatgattgttgtgattcttcctatgaaatagcttttcaaattgactgattaagccattatac-aattggtagtggtttgatagtaccaaattt 182  Q
    |||||||||| ||||||||||||||| | ||||||||| |||| ||||||||||||||||  ||||||| ||||| | |||||||||||| | ||||| |    
T  46904817 aaaaagaaataattgttgtgattctttcaatgaaatagttttttaaattgactgattaagtgattatacaaattgatggtggtttgatagcatcaaatct 46904718  T
Q  183 atgtc 187  Q
    |||||    
T  46904717 atgtc 46904713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 84 - 209
Target Start/End: Complemental strand, 21596410 - 21596283
Alignment:
Q  84 aaaaagaaatgattgttgtgattcttcctatgaaatagcttttcaaattgactgattaagccattatac-aattggtagtggtttgatagtaccaaattt 182  Q
    ||||| ||||||||||||||||||||   ||||||||||||| ||||| |||||||||||  ||||||| |||||| ||||||||||||| | |  ||||    
T  21596410 aaaaataaatgattgttgtgattcttgtaatgaaatagctttccaaatcgactgattaagtgattatacaaattgggagtggtttgatagcatctgattt 21596311  T
Q  183 atgt-cagaaagaataactagagtctag 209  Q
    |||| ||||||| | || ||||||||||    
T  21596310 atgtccagaaaggagaattagagtctag 21596283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 84 - 143
Target Start/End: Original strand, 41707044 - 41707103
Alignment:
Q  84 aaaaagaaatgattgttgtgattcttcctatgaaatagcttttcaaattgactgattaag 143  Q
    ||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||    
T  41707044 aaaaaaaaatgattgttgtgattctttcaatgaaatagcttttcaaattgactgattaag 41707103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 32 - 154
Target Start/End: Complemental strand, 54430682 - 54430557
Alignment:
Q  32 tttggatttgtcacttattcgttgtgggaaaggg-aaaacgaatggtttatgtaaa--aagaaatgattgttgtgattcttcctatgaaatagcttttca 128  Q
    |||||||||||||||  || ||||||| |||||| |||||||||||||||||  ||  || ||||||||||||  ||||||   |||||||| |||||||    
T  54430682 tttggatttgtcactcgtttgttgtggaaaagggtaaaacgaatggtttatgcgaagaaaaaaatgattgttgcaattcttttaatgaaataacttttca 54430583  T
Q  129 aattgactgattaagccattatacaa 154  Q
    |||||||||||||||  |||||||||    
T  54430582 aattgactgattaagtgattatacaa 54430557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 32 - 187
Target Start/End: Original strand, 1649767 - 1649924
Alignment:
Q  32 tttggatttgtcacttattcgttgtgggaaagggaaaacgaatggtttatg-taaaaagaaatgattgttgtgattcttcctatgaaatagcttttcaaa 130  Q
    |||||||||||||||  | |||| | ||||||||||||| ||||| |||||  |||||||| ||||||||| ||  ||| |  |||||||| ||||||||    
T  1649767 tttggatttgtcactcctccgttataggaaagggaaaacaaatggcttatgcaaaaaagaattgattgttgcgaagctttcagtgaaatagattttcaaa 1649866  T
Q  131 ttgactgattaagccattatac-aattggtagtggtttgatagtaccaaatttatgtc 187  Q
    |||| ||||||||  ||||||| ||||||  ||| |||||||| |||| |||||||||    
T  1649867 ttgaatgattaagtgattatacaaattgggggtgatttgatagcaccagatttatgtc 1649924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 22 - 209
Target Start/End: Original strand, 23164496 - 23164688
Alignment:
Q  22 aacggtgtcatttggatttgtcacttattcgttgtgggaaaggg-aaaacgaatggtttatgtaaa--aagaaatgattgttgtgattcttcctatgaaa 118  Q
    ||||||||| |||||||||||||||  |  ||||||| ||| || |||||||||||||||||  ||  || |||| ||||||||||||||| | ||||||    
T  23164496 aacggtgtcgtttggatttgtcactcctctgttgtggaaaaaggtaaaacgaatggtttatgcgaagaaaaaaattattgttgtgattctttcaatgaaa 23164595  T
Q  119 tagcttttcaaattgactgattaagccattatac-aattggtagtggtttgatagtaccaaatttatgt-cagaaagaataactagagtctag 209  Q
    |||  || |||||||| ||||||||  ||||||| |||| |  |||||||||||| | || |||||||| || |||| | |||||||||||||    
T  23164596 tagacttccaaattgattgattaagtgattatacaaattaggggtggtttgataggatcagatttatgtacaaaaaggagaactagagtctag 23164688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 51 - 154
Target Start/End: Original strand, 40152084 - 40152189
Alignment:
Q  51 cgttgtgggaaagggaaaacgaatggtttatgta-aaaagaaatgattgttgtgattcttccta-tgaaatagcttttcaaattgactgattaagccatt 148  Q
    ||||||||||||||| |||| |||||||||||   ||||||||||||||||||||||| |  || |||||||| ||||||||||||| |||||||  |||    
T  40152084 cgttgtgggaaaggggaaacaaatggtttatgcgcaaaagaaatgattgttgtgattcgttttaatgaaatagtttttcaaattgaccgattaagtgatt 40152183  T
Q  149 atacaa 154  Q
    ||||||    
T  40152184 atacaa 40152189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 22 - 209
Target Start/End: Original strand, 46791621 - 46791813
Alignment:
Q  22 aacggtgtcatttggatttgtcacttattcgttgtgggaaagggaaaac-gaatggtttatgtaaa--aagaaatgattgttgtgattcttcctatgaaa 118  Q
    ||||||||| |||||||||||||||  |  ||||||| ||||||  ||  ||||||||||||  ||  || |||||||||||||||||||| | ||||||    
T  46791621 aacggtgtcgtttggatttgtcactcctctgttgtggaaaagggtcaagtgaatggtttatgcgaagaaaaaaatgattgttgtgattcttgcaatgaaa 46791720  T
Q  119 tagcttttcaaattgactgattaagccattatac-aattggtagtggtttgatagtaccaaatttatgt-cagaaagaataactagagtctag 209  Q
    ||| ||| |||||||||||||||||  ||||||| |||| |  |||||||||||| | |  |||||||| || |||| | |||||||||||||    
T  46791721 tagttttccaaattgactgattaagtgattatacaaattagaggtggtttgataggatccgatttatgtacaaaaaggagaactagagtctag 46791813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 22 - 154
Target Start/End: Original strand, 29387678 - 29387813
Alignment:
Q  22 aacggtgtcatttggatttgtcacttattcgttgtgggaaaggg-aaaacgaatggtttatgtaaa--aagaaatgattgttgtgattcttcctatgaaa 118  Q
    ||||||||  |||||||||||||||  |   |||| | |||||| |||||||||||||||||  ||  || |||||||||||||||||||| | ||||||    
T  29387678 aacggtgttgtttggatttgtcactcctctattgtagaaaagggtaaaacgaatggtttatgcgaagaaaaaaatgattgttgtgattctttcaatgaaa 29387777  T
Q  119 tagcttttcaaattgactgattaagccattatacaa 154  Q
    || ||||||||||||| ||||||||  |||||||||    
T  29387778 taacttttcaaattgattgattaagtgattatacaa 29387813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 22 - 154
Target Start/End: Complemental strand, 8364313 - 8364177
Alignment:
Q  22 aacggtgtcatttggatttgtcacttattcgttgtgggaaaggg-aaaacgaatggtttatgtaaa---aagaaatgattgttgtgattcttcctatgaa 117  Q
    ||||||||| |||||||||||| ||  |  ||||||| |||||| ||||| |||||||| ||  ||   || |||||||||||||||||||| | |||||    
T  8364313 aacggtgtcgtttggatttgtctctcctctgttgtggaaaagggtaaaacaaatggtttgtgcgaagaaaaaaaatgattgttgtgattctttcaatgaa 8364214  T
Q  118 atagcttttcaaattgactgattaagccattatacaa 154  Q
    ||| |||| |||||||||||||||||  |||||||||    
T  8364213 ataactttccaaattgactgattaagtgattatacaa 8364177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 141
Target Start/End: Complemental strand, 6715576 - 6715457
Alignment:
Q  25 ggtgtcatttggatttgtcacttattcgttgtgggaaaggg--aaaacgaatggtttatgt-aaaaagaaatgattgttgtgattcttcctatgaaatag 121  Q
    |||||| |||||||||||||||  |  ||||||| ||| ||  |||||||||||||||||  ||||| ||||||||||| |||||||| | ||||||||     
T  6715576 ggtgtcgtttggatttgtcactcctctgttgtggaaaaagggtaaaacgaatggtttatgcgaaaaaaaaatgattgttatgattctttcaatgaaataa 6715477  T
Q  122 cttttcaaattgactgatta 141  Q
    ||||  ||||||||||||||    
T  6715476 ctttcaaaattgactgatta 6715457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 154
Target Start/End: Original strand, 23067648 - 23067784
Alignment:
Q  22 aacggtgtcatttggatttgtcacttattcgttgtgggaaaggg-aaaacgaatggtttatgtaaa--aagaaatgattgt-tgtgattcttcctatgaa 117  Q
    ||||||||||||||||||| |||||  |  ||||||| |||||| ||||| |||||||||||  ||  || |||||||||| ||||||||||   |||||    
T  23067648 aacggtgtcatttggatttttcactcctctgttgtggaaaagggtaaaacaaatggtttatgcgaattaaaaaatgattgtgtgtgattctttaaatgaa 23067747  T
Q  118 atagcttttcaaattgactgattaagccattatacaa 154  Q
    ||| |||||||||||||||| | |||  |||||||||    
T  23067748 ataacttttcaaattgactggtgaagtgattatacaa 23067784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 60 - 143
Target Start/End: Complemental strand, 51147038 - 51146953
Alignment:
Q  60 aaagggaaaacgaatggtttatgtaaaa--agaaatgattgttgtgattcttcctatgaaatagcttttcaaattgactgattaag 143  Q
    |||||||||||||||||||||||  | |  | |||| ||||||||||||||| | || |||||| |||| ||||||||||||||||    
T  51147038 aaagggaaaacgaatggtttatgcgagagaaaaaataattgttgtgattctttcaataaaatagttttttaaattgactgattaag 51146953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 63 - 154
Target Start/End: Original strand, 1255019 - 1255109
Alignment:
Q  63 gggaaaacgaatggtttatg-taaaaagaaatgattgttgtgattcttcctatgaaatagcttttcaaattgactgattaagccattatacaa 154  Q
    ||||||||||||||||||||  ||||| |||| |||||  |||||||| | |||||||| ||||  |||||||| ||||||| ||||||||||    
T  1255019 gggaaaacgaatggtttatgcgaaaaacaaattattgt--tgattctttcaatgaaataactttctaaattgaccgattaagtcattatacaa 1255109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 154
Target Start/End: Original strand, 4207347 - 4207413
Alignment:
Q  84 aaaaagaaatgattgttgtgattcttcctatgaaatagcttttcaaattgactgattaagccattatacaa 154  Q
    ||||||||| ||||||||||||||||    ||||||| |||| |||||||| ||||||||  |||||||||    
T  4207347 aaaaagaaaggattgttgtgattctt----tgaaatatctttccaaattgaatgattaagtgattatacaa 4207413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 154
Target Start/End: Complemental strand, 20762158 - 20762054
Alignment:
Q  53 ttgtgggaaaggg-aaaacgaatggtttatgtaa--aaagaaatgattgttgtgattcttcctatgaaatagcttttcaaattgactgattaagccatta 149  Q
    |||||| |||||| |||||||||||||||||  |  ||| ||||||||||| |||||||| | |||||||||  || |||||| |||||| |||  ||||    
T  20762158 ttgtggaaaagggtaaaacgaatggtttatgcgacgaaaaaaatgattgttatgattctttcaatgaaatagacttccaaattaactgatcaagtgatta 20762059  T
Q  150 tacaa 154  Q
    |||||    
T  20762058 tacaa 20762054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0181 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0181
Description:

Target: scaffold0181; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 22 - 154
Target Start/End: Original strand, 17056 - 17191
Alignment:
Q  22 aacggtgtcatttggatttgtcacttattcgttgtgggaaaggg-aaaacgaatggtttatgtaaa-aagaaa-tgattgttgtgattcttcctatgaaa 118  Q
    ||||||||| |||| ||||||||||| || ||||||| ||| || |||||||||||||||||  || |||||| ||||||||||||||||| | | ||||    
T  17056 aacggtgtcgtttgaatttgtcacttctttgttgtggaaaatggtaaaacgaatggtttatgcgaagaagaaaatgattgttgtgattctttcaacgaaa 17155  T
Q  119 tagcttttcaaattgactgattaagccattatacaa 154  Q
    ||||||| |||||||||||||||||  |||||||||    
T  17156 tagctttccaaattgactgattaagtgattatacaa 17191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 22 - 209
Target Start/End: Complemental strand, 16850 - 16658
Alignment:
Q  22 aacggtgtcatttggatttgtcacttattcgttgtgggaaaggg-aaaacgaatggtttatgtaaaaagaaat--gattgttgtgattcttcctatgaaa 118  Q
    ||||||||| ||||||||||| |||  |  ||||||| |||||| |||||||||||||||||  || | ||||  ||| |||||||||||| | ||||||    
T  16850 aacggtgtcgtttggatttgttactcctctgttgtggaaaagggtaaaacgaatggtttatgcgaagaaaaatatgatcgttgtgattctttcaatgaaa 16751  T
Q  119 tagcttttcaaattgactgattaagccattatac-aattggtagtggtttgatagtaccaaatttatgt-cagaaagaataactagagtctag 209  Q
    |||||||||||||||||||||||||  ||||||| |||| |  |||||||||||| | |  |||||||| || |||| | |||||||||||||    
T  16750 tagcttttcaaattgactgattaagtgattatacaaattaggggtggtttgataggatccgatttatgtacaaaaaggagaactagagtctag 16658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0564 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0564
Description:

Target: scaffold0564; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 22 - 134
Target Start/End: Complemental strand, 1201 - 1086
Alignment:
Q  22 aacggtgtcatttggatttgtcacttattcgttgtgggaaaggg-aaaacgaatggtttatgtaaa--aagaaatgattgttgtgattcttcctatgaaa 118  Q
    ||||||||| |||||||||||||||  |  ||||||| |||||| |||||||||||||||||  ||  || |||||||||||||||||||| | ||||||    
T  1201 aacggtgtcgtttggatttgtcactcctatgttgtggaaaagggtaaaacgaatggtttatgcgaagaaaaaaatgattgttgtgattctttcaatgaaa 1102  T
Q  119 tagcttttcaaattga 134  Q
    ||||||| ||||||||    
T  1101 tagctttccaaattga 1086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 22 - 143
Target Start/End: Original strand, 46099 - 46221
Alignment:
Q  22 aacggtgtcatttggatttgtcacttattcgttgtgggaaaggg-aaaacgaatggtttatgtaaa-aagaaatgattgttgtgattcttcctatgaaat 119  Q
    ||||||||| |||||||||||||||  | | |||||  |||| | |||||||||||||||||| || || ||||||||||||||||| || | |||||||    
T  46099 aacggtgtcgtttggatttgtcactcct-ctttgtgaaaaagagtaaaacgaatggtttatgtgaagaaaaaatgattgttgtgattatttcaatgaaat 46197  T
Q  120 agcttttcaaattgactgattaag 143  Q
    ||  || |||||||||||||||||    
T  46198 agacttccaaattgactgattaag 46221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0606 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0606
Description:

Target: scaffold0606; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 142
Target Start/End: Original strand, 8360 - 8442
Alignment:
Q  63 gggaaaacgaatggtttatgt---aaaaagaaatgattgttgtgattcttcctatgaaatagcttttcaaattgactgattaa 142  Q
    ||||||||||||||||| |||   ||||| |||| ||| ||||||||||| | ||||||||| |||  |||||||||||||||    
T  8360 gggaaaacgaatggtttgtgtggaaaaaaaaaataatttttgtgattctttcaatgaaatagttttcgaaattgactgattaa 8442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 134
Target Start/End: Original strand, 22729 - 22844
Alignment:
Q  22 aacggtgtcatttggatttgtcacttattcgttgtgggaaaggg-aaaacgaatggtttatgtaaa--aagaaatgattgttgtgattcttcctatgaaa 118  Q
    ||||||||| |||| ||||||||||  |  ||||||| |||||| |||||||||||||||||  ||  || |||| ||| ||||||||||| | ||||||    
T  22729 aacggtgtcgtttgaatttgtcactcctatgttgtggaaaagggtaaaacgaatggtttatgcgaagaaaaaaataattattgtgattctttcaatgaaa 22828  T
Q  119 tagcttttcaaattga 134  Q
    ||| |||||| |||||    
T  22829 tagtttttcatattga 22844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University