View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7765_high_5 (Length: 552)
Name: NF7765_high_5
Description: NF7765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7765_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 439; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 12 - 534
Target Start/End: Original strand, 41151886 - 41152408
Alignment:
| Q |
12 |
aactcataacttatttatttctatcttttaagacacttgttattgatcctacaatcaagagaataaatggacagagactaattaaaacaccaaacaagaa |
111 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41151886 |
aactaataacttatttatttctatcttttaagacacttgttattgatcctacaatcaagagaataaatggacagagactaattaaaacaccaaacaagaa |
41151985 |
T |
|
| Q |
112 |
cccaaaattgattcaaaatgtcattagcacataactagagaaaatacctaatccataccccacactttcccaacttgagagcccatattttttgacnnnn |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
41151986 |
cccaaaattgattcaaaatgtcattagcacataactagagaaaatacctaatccataccccacactttcccaacttgagagcccatatttattgacaaaa |
41152085 |
T |
|
| Q |
212 |
nnngcctccatccaattatttcagcatctgctacattattagtctgccgtgaagacctccatgaaagaattaaaaccagcagtcacacagcatgtaaaac |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |
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| T |
41152086 |
aaagcctccatccaattatttcagcatctgctacattattagtctgccgtgaagacctccatg-aagaattaaaaccagcagtcacacaacatgtaaaac |
41152184 |
T |
|
| Q |
312 |
atttcttnnnnnnnntgtaagattaatcatttacactaatacacgtgccaagctcttgaacggccacaacaataatcgatgtaagattaatcatttacac |
411 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |
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| T |
41152185 |
atttcttaaaaaaaatgtaagattaatcatttacactaatacacgtgccaagctcttgaacgcccacaacaatagtcgatgtaagattaatcatttacac |
41152284 |
T |
|
| Q |
412 |
ttaaatctaataat-ttacccgcctaagtaaaaatatcattgaggagagcaagcattttagcacttaggggatctaagcaatgtaaaataatgcaagtgt |
510 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
41152285 |
ttaaatctaataatattacccgcctaagtaaaaatatcattgaggagagcaagcattttagcacttaggggatctaagcaatgcaaaataatgcaagtgt |
41152384 |
T |
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| Q |
511 |
aagtgtaaagtatgagattcatga |
534 |
Q |
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| T |
41152385 |
aagtgtaaagtatgagattcatga |
41152408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 94 - 182
Target Start/End: Complemental strand, 41150567 - 41150478
Alignment:
| Q |
94 |
taaaacaccaaacaagaacccaaaattgattcaaaatgtcattagcacataa-ctagagaaaatacctaatccataccccacactttccc |
182 |
Q |
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|||||||||| || |||||||||||||||||||||||| ||||||||| ||| |||||||||| | |||||||| |||||||||||||| |
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| T |
41150567 |
taaaacaccatactagaacccaaaattgattcaaaatggcattagcacgtaagctagagaaaacccataatccatgccccacactttccc |
41150478 |
T |
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