View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7765_high_8 (Length: 514)
Name: NF7765_high_8
Description: NF7765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7765_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 456; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 20 - 499
Target Start/End: Original strand, 11762901 - 11763380
Alignment:
| Q |
20 |
tacatcactataacaatcaacaaacttttcattgtacaacaaatttgcagcaactgaaaaatgaaaataactactccatgaaggtcaatccagctgtgct |
119 |
Q |
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| T |
11762901 |
tacatcactataacaatcaacaaacttttcattgtacaacaaatttgcagcaactgaaaaatgaaaataactattccatcaaggtcaatccagctgtgct |
11763000 |
T |
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| Q |
120 |
tttaaggatgttaaagaattgtgagtcagttcaagttagaaaattactagctttattgtcattttcagaactaacaggaactactgcagggccgccgttt |
219 |
Q |
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| T |
11763001 |
tttaaggatgttaaagaattgtgagtcagttcaagttagaaaattactagctttaccgtcattttcagaactaacaggaactactgcagggccgccgttt |
11763100 |
T |
|
| Q |
220 |
aaagagtcctcaaagttcatctgagcatattcatcaaccgtcccttttctttcactgtaaatgatctccttattttccacctcagcttgttcaaccttct |
319 |
Q |
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| T |
11763101 |
aaagagtcctcaaagttcatctgagcatattcatcaaccgtcccttttctttcactgtaaatgatctccttattttccacctcagcttgttcaaccttct |
11763200 |
T |
|
| Q |
320 |
ccatggtcatcgtgctgacatcctcagctgccttggcaacaacgctaaacgcactcgacagccatgaagctccggttaagacataagaattgctcatgat |
419 |
Q |
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| T |
11763201 |
ccatggtcatcgtgctgacatcctcagctgccttggcaacaacgctaaacgcactcgacagccataaagctccagttaagacataagaattgctcatgat |
11763300 |
T |
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| Q |
420 |
agcggatccagcactacttgccttttgctcagcaacagcaatagcagactttgtcatttcagaaagctgatacctttcat |
499 |
Q |
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| T |
11763301 |
agcggatccagcactacttgccttttgctcagcaacagcaatagcagactttgtcatttcagaaagctgatacctttcat |
11763380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 86; Significance: 7e-41; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 268 - 489
Target Start/End: Original strand, 44706246 - 44706467
Alignment:
| Q |
268 |
ctttcactgtaaatgatctccttattttccacctcagcttgttcaaccttctccatggtcatcgtgctgacatcctcagctgccttggcaacaacgctaa |
367 |
Q |
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|||||||||||||||||||| || || || ||||| || ||||||||||||||||||||| ||| | ||||| |||||||| || |||||||| ||| |
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| T |
44706246 |
ctttcactgtaaatgatctctttcttatcaacctcggccatttcaaccttctccatggtcattgtggttacatcttcagctgcttttgcaacaacagtaa |
44706345 |
T |
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| Q |
368 |
acgcactcgacagccatgaagctccggttaagacataagaattgctcatgatagcggatccagcactacttgccttttgctcagcaacagcaatagcaga |
467 |
Q |
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| T |
44706346 |
ttgcactcgacacccacgaagctccggttgatacataaggattgctcatgattgcagatccagcatcacttgccttttgctcagcaaccgcataaacaga |
44706445 |
T |
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| Q |
468 |
ctttgtcatttcagaaagctga |
489 |
Q |
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|||||| ||||||||| |||| |
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| T |
44706446 |
ctttgttttttcagaaacctga |
44706467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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