View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7765_high_9 (Length: 512)
Name: NF7765_high_9
Description: NF7765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7765_high_9 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 452; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 17 - 496
Target Start/End: Complemental strand, 14824654 - 14824175
Alignment:
| Q |
17 |
ccttctctccatcacaaaaatctctgctttaggtactctctctcagccattcctttcgattttttcttgttatcacttgcatgttgtttaattggttcat |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
14824654 |
ccttctctccatcacaaaaatctctgctttaggtactctctctcagccattcctttcgattttttcctgttatcacttgcatgttgtttaattggttcat |
14824555 |
T |
|
| Q |
117 |
gtgtttgattattcattgcattttctttattttcaatattattacagctttgaatattgttttgaatgcatgttgctttcaatcgctgctatcttcaact |
216 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14824554 |
gtgtttgattattcattgcattttctttgttttcaatattattacagctttgaatgttgttttgaatgcatgttgctttcaatcgctgctatcttcaact |
14824455 |
T |
|
| Q |
217 |
tattcattatattatgtttatctataaaacaaaagcactgatttcatgcttttagagtgaaaataattttgcatgtaatgattttgaaattttcctcgcg |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
14824454 |
tattcattatattatgtttatctataaaacaaaagcactgatttcatgcttttagagtgaaaataattttgcatgtgatgattttgaaattttcctcgcg |
14824355 |
T |
|
| Q |
317 |
atattttagttgtaaaagaagccatttatcatgattttgttaaatcagtgtcatattcatgttctacatccttgaaaatacatattgtgcgctttttaca |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14824354 |
atattttagttgtaaaagaagccatttatcatgcttttgttaaatcagtgtcatattcatgttctacatccttgaaaatacatattgtgcgctttttaca |
14824255 |
T |
|
| Q |
417 |
tcattttcttcaaagttcttcatttttcatgttgtaaatctaaaaatttgttctcacagtaaaggaactgaaattatatt |
496 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
14824254 |
tcattttctttaaagttcttcatttttcatgttgtaaatctaaaaatttgttctcacagtaaaagaactgaaattatatt |
14824175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 71; Significance: 6e-32; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 17 - 155
Target Start/End: Complemental strand, 32952860 - 32952723
Alignment:
| Q |
17 |
ccttctctccatcacaaaaatctctgctttaggtactctctctcagccattcctttcgattttttcttgttatcacttgcatgttgtttaattggttcat |
116 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||||| |||| ||||||||||||||||||||| | | ||||||||||||||||||||||| ||||||| |
|
|
| T |
32952860 |
ccttctctccatcacaaaa-tctctgcttcaggtaatctcaatcagccattcctttcgattttcttctcttatcacttgcatgttgtttaatcggttcat |
32952762 |
T |
|
| Q |
117 |
gtgtttgattattcattgcattttctttattttcaatat |
155 |
Q |
| |
|
||||||||| || ||||||||| ||| |||||||||| |
|
|
| T |
32952761 |
gtgtttgatccttacttgcattttgtttgttttcaatat |
32952723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 315 - 452
Target Start/End: Complemental strand, 32952571 - 32952435
Alignment:
| Q |
315 |
cgatattttagttgtaaaagaagccatttatcatgattttgttaaatcagtgtcatattcatgttctacatccttgaaaatacatattgtgcgcttttta |
414 |
Q |
| |
|
|||||||||||| | ||||||||||||| |||||| |||||||||||| |||||||||||| ||||||||||||||| ||| ||| ||| | ||||| |
|
|
| T |
32952571 |
cgatattttagtgttgaaagaagccatttttcatgagtttgttaaatcaatgtcatattcattttctacatccttgaagatatataatgt--gttttttt |
32952474 |
T |
|
| Q |
415 |
catcatttt-cttcaaagttcttcatttttcatgttgta |
452 |
Q |
| |
|
||||||||| || ||||||||||||||| ||||||||| |
|
|
| T |
32952473 |
catcattttcctaaaaagttcttcattttacatgttgta |
32952435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 71; Significance: 6e-32; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 17 - 155
Target Start/End: Complemental strand, 19308395 - 19308258
Alignment:
| Q |
17 |
ccttctctccatcacaaaaatctctgctttaggtactctctctcagccattcctttcgattttttcttgttatcacttgcatgttgtttaattggttcat |
116 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||||| |||| ||||||||||||||||||||| | | |||||||||||||||||||||||| |||||| |
|
|
| T |
19308395 |
ccttctctccatcacaaaa-tctctgcttcaggtaatctcaatcagccattcctttcgattttcttctcttatcacttgcatgttgtttaattagttcat |
19308297 |
T |
|
| Q |
117 |
gtgtttgattattcattgcattttctttattttcaatat |
155 |
Q |
| |
|
||||||||| || ||||||||| ||| |||||||||| |
|
|
| T |
19308296 |
gtgtttgatccttacttgcattttgtttgttttcaatat |
19308258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 315 - 462
Target Start/End: Complemental strand, 19308106 - 19307960
Alignment:
| Q |
315 |
cgatattttagttgtaaaagaagccatttatcatgattttgttaaatcagtgtcatattcatgttctacatccttgaaaatacatattgtgcgcttttta |
414 |
Q |
| |
|
|||||||||||| | ||||||||||||| |||||| ||||||||||||||||||||||||| ||||||||||||||| ||| ||| ||| | |||| |
|
|
| T |
19308106 |
cgatattttagtgttgaaagaagccatttttcatgagtttgttaaatcagtgtcatattcattttctacatccttgaagatatataatgt--gtttttgt |
19308009 |
T |
|
| Q |
415 |
catcattttc-ttcaaagttcttcatttttcatgttgtaaatctaaaaa |
462 |
Q |
| |
|
|||||||||| | ||||||||| ||||| ||||||||| |||| |||| |
|
|
| T |
19308008 |
catcattttcgtataaagttcttaattttacatgttgtagatcttaaaa |
19307960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University