View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7765_low_11 (Length: 527)
Name: NF7765_low_11
Description: NF7765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7765_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 18 - 497
Target Start/End: Original strand, 7566056 - 7566538
Alignment:
| Q |
18 |
gtttccttgtgatgggaagtaatatatcattctgtggagaatttgagtttgaggctctgtttcggggtgtatttgaggtgtaagtttatgccaacgtgac |
117 |
Q |
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| T |
7566056 |
gtttccttgtgatgggaagtaatatatcattctgtggagaatttgagtttgaggctctgtt-cggggtgtatttgaggtgtaagtttatgccaacgtgac |
7566154 |
T |
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| Q |
118 |
atatttcattaatttgttcactggttattatgtaatgtaataatgattatacataggcataccttggaatggagtgcatagacatgattaactactctgt |
217 |
Q |
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| T |
7566155 |
atatttctttaatttgttcactggttattatgtaatgtaataatgattatacataggcataccttggaatggagtgcatagacatgattaactactctgt |
7566254 |
T |
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| Q |
218 |
attattgaatcaagtttctttctatacgtattt--tgtttctttcaccggtgaaaaaggtcttgaagttagggtattttcttgaaaaatgtttggt-gga |
314 |
Q |
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| T |
7566255 |
attattgaatcaagtttctttctatacgtattttgtgtttctttcactggtgaaaaaggtcttgaagttagggtattttcttgaaaaatgtttggtggga |
7566354 |
T |
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| Q |
315 |
cacccatagaagtagagggagtcatttgataggttgattatatgataggannnnnnnnnnnnnnnnnaaatgaagtgttgaattaatgtttgaaaataag |
414 |
Q |
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| T |
7566355 |
cacccatagaggtagagggagtcatttgataggttgatgatatgataggaagagagagatagagagaaaatgaagtgttaaataaatgtttgaaaataaa |
7566454 |
T |
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| Q |
415 |
gagtctacatgtattattgttgaata-ttttttccctatatctttgcgcattttatgttgagtttgatgtgtgattcatataaa |
497 |
Q |
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| T |
7566455 |
gagtctacatgtatcattgttgaatatttttttccctatatctttgcgtattttatgatgagtttgatgtatgattcatataaa |
7566538 |
T |
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